BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26090.1 Length=1734 Score E Sequences producing significant alignments: (Bits) Value Ahg484372 jgi|Araly1|484372|fgenesh2_kg.5__364__AT3G26090.1 2547 0.0 > Ahg484372 jgi|Araly1|484372|fgenesh2_kg.5__364__AT3G26090.1 Length=1661 Score = 2547 bits (1379), Expect = 0.0 Identities = 1524/1594 (96%), Gaps = 9/1594 (1%) Strand=Plus/Plus Query 19 TTTATAGAAATTTGCACACTTTACCTTGACATTAAAGCAACAAGCTTTGAAACCAA-ATA 77 ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || | | Sbjct 1 TTTATTGAAATTTGCACACTTTACCTTGACATTAAAGCAACAAGCTTTGGAACAAACAAA 60 Query 78 AAATCTCAAAAACCCAGAAAGCGAGT-GGAG-A-AGAGAGAGCTGATATGCTACAATAGA 134 |||||||||||||||||||| ||||| |||| | ||||||||||||||| |||||||| | Sbjct 61 AAATCTCAAAAACCCAGAAATCGAGTGGGAGAAGAGAGAGAGCTGATATACTACAATAAA 120 Query 135 AATGGCGAGTGGATGTGCTCTACATGGTGGTTGTCCCAGCGATTACGTCGCCGTCGCAAT 194 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 121 AATGACGAGTGGATGTGCTATACATGGTGGTTGTCCCAGCGATTACGTCGCCGTCGCAAT 180 Query 195 TTCAGTCATCTGCTTCTTCGTGCTGTTATCGCGCTCAGTGTTACCGTGTTTGATTCATAA 254 |||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||| || Sbjct 181 TTCAGTAATCTGCTTCTTCGTGCTTTTATCGCGCTCGGTCTTACCGTGTTTGATTCACAA 240 Query 255 GGCTCCTCGTACTAACAGTAGCAGTTTCTGGATCCCTGTTATTCAAGTTATCTCCAGCTT 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GGCTCCTCGTACTAACAGTAGCAGTTTCTGGATCCCTGTTATTCAAGTTATCTCCAGCTT 300 Query 315 CAACCTTCTCTTCTCAATTATGATGTCAGTTAATTTGCTTCGATTCAGGACGAAACATTG 374 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 301 CAACCTTCTGTTCTCAATTATGATGTCAGTTAATTTACTTCGATTCAGGACGAAACATTG 360 Query 375 GTGGCGATATTGCTATCTTTGGGCAGTGTGGATTGAAGGACCACTTGGGTTTGGTTTGTT 434 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 361 GTGGCGATATTGCTATCTTTGGGCAGTGTGGATTGAAGGACCACTTGGATTTGGTTTGCT 420 Query 435 GATGAGCTGCCGTATAACTCAGGCATTTCAACTATACTTCATATTTGTCAAGAAACGTCT 494 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GATGGGCTGCCGTATAACTCAGGCATTTCAACTATACTTCATATTTGTCAAGAAACGTCT 480 Query 495 ACCTCCGGTAAAATCATACATTTTCCTCCCCCTTGTTTTGTTGCCATGGATCTTCGGAGC 554 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 ACCACCCGTAAAATCATACATTTTCCTCCCCCTTGTTTTGTTGCCATGGATCTTCGGAGC 540 Query 555 TGCAATTATCCACGCAACAAAGCCTCTCAACGATAAATGCCACATGGGTCTTCAATGGAC 614 |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 541 TGCAATTATCCACGCAACAAAGCCTCTCAATGATAAATGCCACATGCGTCTTCAATGGAC 600 Query 615 TTTCCCAGTTGCAGGCCTTCATGCTCTCTATGTCCTTGCTTTAATTGCATTCACAAGAGC 674 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TTTCCCAGTTGCAGGCCTTCATGCTCTCTATGTCCTTGCTTTAATTGCATTCACAAGAGC 660 Query 675 AGTTCGACATGTAGAGTTTCGTTTTGACGAGCTTAGAGATCTCTGGAAAGGAATTCTCGT 734 ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 661 AGTCCGACATGTAGAGTTTCGTTTTGATGAGCTTAGAGATCTCTGGAAAGGAATTCTTGT 720 Query 735 CTCAGCCACTTCAATCGTTATATGGGTAACAGCGTTTGTGTTGAATGAGATTCATGAAGA 794 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CTCAGCCACTTCAATCATTATATGGGTAACAGCGTTTGTGTTGAATGAGATTCATGAAGA 780 Query 795 AATCTCTTGGCTTCAGGTTGCTTCAAGATTTGTGCTT-TTAGTCACGGGTGGGATTCTCG 853 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 781 AATCTCTTGGCTTCAGGTTGCTTCAAGATTTGTGCTTCTT-GTCACGGGTGGGATTCTCG 839 Query 854 TCGTTGTCTTCTTTTCCATCTCGAGTAACCAACCTCTTCTTTCACAAATCAGCTTGAAGA 913 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 840 TCGTTGTCTTCTTTTCCATCTCGAGTAATCAACCTCTTCTTTCACAAATCAGCTTGAAGA 899 Query 914 AAAGACAAAACTTTGAGTTTCAAAGAATGGGTCAAGCTCTAGGCATTCCCGATAGCGGAT 973 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 900 AAAGAGAACACTTTGAGTTTCAAAGAATGGGTCAAGCTCTAGGCATTCCCGATAGCGGCT 959 Query 974 TATTATTTCGGAAGGAGGAGTTTCGACCTGTTGACCCAAACGAGCCACTCGATAAGCTTC 1033 ||||||| || |||||||| | |||||||||||| ||||||||||||||||||||||||| Sbjct 960 TATTATTCCGAAAGGAGGAATATCGACCTGTTGATCCAAACGAGCCACTCGATAAGCTTC 1019 Query 1034 TTCTCAATAAAAGATTTCGCCATTCGTTTATGGAATTTGCTGATAGCTGCTACGCTGGAG 1093 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1020 TTCTCAATAAAAGATTTCGCCAATCGTTTATGGAATTTGCTGATAGCTGCTACGCTGGAG 1079 Query 1094 AAACATTGCAtttttttGAAGAGGTGTATGAACATGGTAAAATCCCGGAAGATGATTCGA 1153 |||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| Sbjct 1080 AAACATTGCATTTTTTTGAAGAAGTGTATGAACATGGAAAAATCCCGGTAGATGATTCGA 1139 Query 1154 TAAGAAGAATCTACATGGCTCGACATATCATGGAGAAGTTCATCGTCGCAGGAGCGGAAA 1213 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 1140 TAAGAAGAATCTACATGGCTCGACATATCATGGAGAAGTTCATTGTCACAGGAGCGGAAA 1199 Query 1214 TGGAATTGAACTTATCTCATAAAACCCGACAAGAGATCTTAACCACTCAAGATCTAACTC 1273 ||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 TGGAAGTAAATTTATCTCATAAAACCCGACAAGAGATCTTAACCACTCAAGATCTAACTC 1259 Query 1274 ACACTGATCTCTTCAAGAACGCATTAAACGAAGTCATGCAATTGATCAAGATGAACTTGG 1333 || ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1260 ACTCTGATCTATTCAAGAACGCATTAAACGAAGTGATGCAATTGATCAAGATGAACTTGG 1319 Query 1334 TAAGAGATTACTGGTCATCCATCTACTTCATCAAGTTCAAAGAAGAAGAAAGCTGCCACG 1393 | |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || Sbjct 1320 TGAGAGATTACTGGACATCCATATACTTCATCAAGTTCAAAGAAGAAGAAAGCTGCGGCG 1379 Query 1394 AGGCAATGCATAAGGAAGGATACAGTTTTTCATCTCCAAGACTGAGTTCAGTTCAAGGCT 1453 |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1380 AGGCAATGCAAAAGGAAGGATGGAGTTTTTCATCTCCAAGACTGAGTTCAGTTCAAGGCT 1439 Query 1454 CTGATGATCCTTTCTATCAAGAACATATGTCAAAGAGTTCCAGATGCAGTAGTCCCGGTT 1513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1440 CTGATGATCCTTTCTATCAAGAACATATGTCAAAGAGTTCCAGATGCAGTAGTCCCGGTT 1499 Query 1514 AAGGAGTCTAAAACTGGTACTAGACCAGAACCCAAA-CCAATGTTCATAGCAATCCAATC 1572 |||||||||||| | |||||||||||||||| ||| ||||||||||||||||||| ||| Sbjct 1500 AAGGAGTCTAAACC-GGTACTAGACCAGAACGAAAAACCAATGTTCATAGCAATCCGATC 1558 Query 1573 CATGTAATCTTCCTTCACATTTCTTGTACATGTC 1606 ||| |||||||| ||||||||||||||||||||| Sbjct 1559 CATATAATCTTC-TTCACATTTCTTGTACATGTC 1591 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65058138460 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5