BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26090.1
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484372 jgi|Araly1|484372|fgenesh2_kg.5__364__AT3G26090.1 2547 0.0
> Ahg484372 jgi|Araly1|484372|fgenesh2_kg.5__364__AT3G26090.1
Length=1661
Score = 2547 bits (1379), Expect = 0.0
Identities = 1524/1594 (96%), Gaps = 9/1594 (1%)
Strand=Plus/Plus
Query 19 TTTATAGAAATTTGCACACTTTACCTTGACATTAAAGCAACAAGCTTTGAAACCAA-ATA 77
||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || | |
Sbjct 1 TTTATTGAAATTTGCACACTTTACCTTGACATTAAAGCAACAAGCTTTGGAACAAACAAA 60
Query 78 AAATCTCAAAAACCCAGAAAGCGAGT-GGAG-A-AGAGAGAGCTGATATGCTACAATAGA 134
|||||||||||||||||||| ||||| |||| | ||||||||||||||| |||||||| |
Sbjct 61 AAATCTCAAAAACCCAGAAATCGAGTGGGAGAAGAGAGAGAGCTGATATACTACAATAAA 120
Query 135 AATGGCGAGTGGATGTGCTCTACATGGTGGTTGTCCCAGCGATTACGTCGCCGTCGCAAT 194
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATGACGAGTGGATGTGCTATACATGGTGGTTGTCCCAGCGATTACGTCGCCGTCGCAAT 180
Query 195 TTCAGTCATCTGCTTCTTCGTGCTGTTATCGCGCTCAGTGTTACCGTGTTTGATTCATAA 254
|||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||| ||
Sbjct 181 TTCAGTAATCTGCTTCTTCGTGCTTTTATCGCGCTCGGTCTTACCGTGTTTGATTCACAA 240
Query 255 GGCTCCTCGTACTAACAGTAGCAGTTTCTGGATCCCTGTTATTCAAGTTATCTCCAGCTT 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGCTCCTCGTACTAACAGTAGCAGTTTCTGGATCCCTGTTATTCAAGTTATCTCCAGCTT 300
Query 315 CAACCTTCTCTTCTCAATTATGATGTCAGTTAATTTGCTTCGATTCAGGACGAAACATTG 374
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 CAACCTTCTGTTCTCAATTATGATGTCAGTTAATTTACTTCGATTCAGGACGAAACATTG 360
Query 375 GTGGCGATATTGCTATCTTTGGGCAGTGTGGATTGAAGGACCACTTGGGTTTGGTTTGTT 434
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 361 GTGGCGATATTGCTATCTTTGGGCAGTGTGGATTGAAGGACCACTTGGATTTGGTTTGCT 420
Query 435 GATGAGCTGCCGTATAACTCAGGCATTTCAACTATACTTCATATTTGTCAAGAAACGTCT 494
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GATGGGCTGCCGTATAACTCAGGCATTTCAACTATACTTCATATTTGTCAAGAAACGTCT 480
Query 495 ACCTCCGGTAAAATCATACATTTTCCTCCCCCTTGTTTTGTTGCCATGGATCTTCGGAGC 554
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACCACCCGTAAAATCATACATTTTCCTCCCCCTTGTTTTGTTGCCATGGATCTTCGGAGC 540
Query 555 TGCAATTATCCACGCAACAAAGCCTCTCAACGATAAATGCCACATGGGTCTTCAATGGAC 614
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 541 TGCAATTATCCACGCAACAAAGCCTCTCAATGATAAATGCCACATGCGTCTTCAATGGAC 600
Query 615 TTTCCCAGTTGCAGGCCTTCATGCTCTCTATGTCCTTGCTTTAATTGCATTCACAAGAGC 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTCCCAGTTGCAGGCCTTCATGCTCTCTATGTCCTTGCTTTAATTGCATTCACAAGAGC 660
Query 675 AGTTCGACATGTAGAGTTTCGTTTTGACGAGCTTAGAGATCTCTGGAAAGGAATTCTCGT 734
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 661 AGTCCGACATGTAGAGTTTCGTTTTGATGAGCTTAGAGATCTCTGGAAAGGAATTCTTGT 720
Query 735 CTCAGCCACTTCAATCGTTATATGGGTAACAGCGTTTGTGTTGAATGAGATTCATGAAGA 794
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTCAGCCACTTCAATCATTATATGGGTAACAGCGTTTGTGTTGAATGAGATTCATGAAGA 780
Query 795 AATCTCTTGGCTTCAGGTTGCTTCAAGATTTGTGCTT-TTAGTCACGGGTGGGATTCTCG 853
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 781 AATCTCTTGGCTTCAGGTTGCTTCAAGATTTGTGCTTCTT-GTCACGGGTGGGATTCTCG 839
Query 854 TCGTTGTCTTCTTTTCCATCTCGAGTAACCAACCTCTTCTTTCACAAATCAGCTTGAAGA 913
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 840 TCGTTGTCTTCTTTTCCATCTCGAGTAATCAACCTCTTCTTTCACAAATCAGCTTGAAGA 899
Query 914 AAAGACAAAACTTTGAGTTTCAAAGAATGGGTCAAGCTCTAGGCATTCCCGATAGCGGAT 973
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 900 AAAGAGAACACTTTGAGTTTCAAAGAATGGGTCAAGCTCTAGGCATTCCCGATAGCGGCT 959
Query 974 TATTATTTCGGAAGGAGGAGTTTCGACCTGTTGACCCAAACGAGCCACTCGATAAGCTTC 1033
||||||| || |||||||| | |||||||||||| |||||||||||||||||||||||||
Sbjct 960 TATTATTCCGAAAGGAGGAATATCGACCTGTTGATCCAAACGAGCCACTCGATAAGCTTC 1019
Query 1034 TTCTCAATAAAAGATTTCGCCATTCGTTTATGGAATTTGCTGATAGCTGCTACGCTGGAG 1093
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTCTCAATAAAAGATTTCGCCAATCGTTTATGGAATTTGCTGATAGCTGCTACGCTGGAG 1079
Query 1094 AAACATTGCAtttttttGAAGAGGTGTATGAACATGGTAAAATCCCGGAAGATGATTCGA 1153
|||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||
Sbjct 1080 AAACATTGCATTTTTTTGAAGAAGTGTATGAACATGGAAAAATCCCGGTAGATGATTCGA 1139
Query 1154 TAAGAAGAATCTACATGGCTCGACATATCATGGAGAAGTTCATCGTCGCAGGAGCGGAAA 1213
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1140 TAAGAAGAATCTACATGGCTCGACATATCATGGAGAAGTTCATTGTCACAGGAGCGGAAA 1199
Query 1214 TGGAATTGAACTTATCTCATAAAACCCGACAAGAGATCTTAACCACTCAAGATCTAACTC 1273
||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TGGAAGTAAATTTATCTCATAAAACCCGACAAGAGATCTTAACCACTCAAGATCTAACTC 1259
Query 1274 ACACTGATCTCTTCAAGAACGCATTAAACGAAGTCATGCAATTGATCAAGATGAACTTGG 1333
|| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1260 ACTCTGATCTATTCAAGAACGCATTAAACGAAGTGATGCAATTGATCAAGATGAACTTGG 1319
Query 1334 TAAGAGATTACTGGTCATCCATCTACTTCATCAAGTTCAAAGAAGAAGAAAGCTGCCACG 1393
| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1320 TGAGAGATTACTGGACATCCATATACTTCATCAAGTTCAAAGAAGAAGAAAGCTGCGGCG 1379
Query 1394 AGGCAATGCATAAGGAAGGATACAGTTTTTCATCTCCAAGACTGAGTTCAGTTCAAGGCT 1453
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1380 AGGCAATGCAAAAGGAAGGATGGAGTTTTTCATCTCCAAGACTGAGTTCAGTTCAAGGCT 1439
Query 1454 CTGATGATCCTTTCTATCAAGAACATATGTCAAAGAGTTCCAGATGCAGTAGTCCCGGTT 1513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CTGATGATCCTTTCTATCAAGAACATATGTCAAAGAGTTCCAGATGCAGTAGTCCCGGTT 1499
Query 1514 AAGGAGTCTAAAACTGGTACTAGACCAGAACCCAAA-CCAATGTTCATAGCAATCCAATC 1572
|||||||||||| | |||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct 1500 AAGGAGTCTAAACC-GGTACTAGACCAGAACGAAAAACCAATGTTCATAGCAATCCGATC 1558
Query 1573 CATGTAATCTTCCTTCACATTTCTTGTACATGTC 1606
||| |||||||| |||||||||||||||||||||
Sbjct 1559 CATATAATCTTC-TTCACATTTCTTGTACATGTC 1591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65058138460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5