BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26100.2
Length=2451
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484373 jgi|Araly1|484373|fgenesh2_kg.5__365__AT3G26100.2 2689 0.0
> Ahg484373 jgi|Araly1|484373|fgenesh2_kg.5__365__AT3G26100.2
Length=2234
Score = 2689 bits (1456), Expect = 0.0
Identities = 1700/1816 (94%), Gaps = 24/1816 (1%)
Strand=Plus/Plus
Query 351 CAAAGAAACTCACTATAGC-TTGTCTGTAGATTCTGATGTTCGAATTCTTGTTG-t--tg 406
|||||||||||||| |||| |||||| || ||||||||||||||||| |||||| | ||
Sbjct 200 CAAAGAAACTCACTTTAGCTTTGTCTTTAAATTCTGATGTTCGAATTATTGTTGTTGATG 259
Query 407 atg-a--tgat--tgaattgatgatgatgatggtttgatgcagatgGGTTTTCAA-AAAT 460
||| | |||| |||||||||||||||||| |||||||||||||||||||| || || |
Sbjct 260 ATGAATCTGATGATGAATTGATGATGATGATTGTTTGATGCAGATGGGTTTT-AAGAATT 318
Query 461 CTCATCTTTTTTCTTAACAAATCAAAAAGCTTAGAACTTGTTGA-ACAATACTAGAGACT 519
||| | |||||||||| ||||||||||||||| |||||||| | | ||||||||||||
Sbjct 319 TTCAACCTTTTTCTTAAAAAATCAAAAAGCTTAAAACTTGTTCAGA-AATACTAGAGACA 377
Query 520 AGAGAATTTGCAGATAATCTGTTTCA--AAAATGGATGCT---ACGAGTGGAACTCCGAG 574
| ||||||||||| |||||||||||| ||||||||||| || |||||||||||| |
Sbjct 378 ACAGAATTTGCAGGTAATCTGTTTCAGGCAAATGGATGCTACAACTAGTGGAACTCCGGG 437
Query 575 TTTACAGTATATTAACTTGCCGGAACAATCTGTTTCGACTACTTCTCCTCCTGTGTCACC 634
||||||||| ||||||| ||||| ||| | ||||||||| |||||||||||||||||||
Sbjct 438 ATTACAGTATCTTAACTTACCGGAGCAACCGGTTTCGACTGCTTCTCCTCCTGTGTCACC 497
Query 635 ATTTCAGAGGCCAAAACGACATTGCTTTGGTGACACAACTCCAGGAGAGTTTCCTTTAGC 694
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 498 ATTTCAGAGGCCAAAACGACATTGCTTTGGTGACTCAACTCCTGGAGAGTTTCCTTTAGC 557
Query 695 AGCTAACCCTTCCATTGTCCTACATGTTCTCACTGAATGTAGATTGGATCCTCGTGACCT 754
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 558 AGCTAATCCGTCCATTGTCCTTCATGTTCTCACTGAATGTAGATTGGATCCTCGTGACCT 617
Query 755 CGCTAATCTCGAGGCAACATGCTCGTTCTTTAGCCAGCCAGCAAACTTTGCCCCGGACAT 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 CGCTAATCTCGAGGCAACATGCTCGTTCTTTAGCCAGCCAGCAAACTTTGCCCCGGACAT 677
Query 815 TAACCTATCACTATCGGAGCTCGCTGCTCTCGACATGTGTAATAAAAGGGTGATTTTCAA 874
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 678 TAATCTATCACTGTCGGAGCTTGCTGCTCTCGACATGTGTAATAAAAGGGTGATTTTCAA 737
Query 875 GCCGATGAATGAAGAAGAACGTCAAGAGATGAAACGTAGGTGCGGAGGATCATGGAAATT 934
||| ||||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||
Sbjct 738 GCCCATGAATGAAGAAGAACGTCAAGAGATGAAACATAGATGCGGTGGATCGTGGAAATT 797
Query 935 AGTCCTTCGGTTTTTGCTGGCTGGTGAAGCGTGTTGTCGAAGAGAGAAATCTCAAGCTGT 994
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 798 GGTCCTACGGTTTTTGCTGGCTGGTGAAGCGTGTTGTCGAAGAGAGAAATCTCAAGCAGT 857
Query 995 TGCTGGTCCTGGTCATAGTGTAGCAGTCACATCGAAAGGAGAAGTTTATACTTTCGGATA 1054
||||||||||||||||||| | ||||||||||| ||||| ||||||||||||||||||||
Sbjct 858 TGCTGGTCCTGGTCATAGTATCGCAGTCACATCAAAAGGCGAAGTTTATACTTTCGGATA 917
Query 1055 TAATAACTCTGGACAGCTAGGACATGGTCATACCGAGGA-CGAAGCTCGAATTCAACCTG 1113
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 918 TAATAACTCTGGACAGCTAGGACATGGTCATACCGAGGAAC-AAGCTCGAATTCAACCTG 976
Query 1114 TTAGATCATTGCAGGGAGTTCGAATCATCCAAGCAGCTGCTGGTGCTGCTCGGACAATGC 1173
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 977 TTAGATCATTGCAGGGAATTCGAATCATCCAAGCAGCTGCTGGTGCTGCCCGGACAATGC 1036
Query 1174 TAATAAGCGATGACGGAAAAGTTTATGCGTGTGGAAAAGAATCCTTCGGGGAAGCTGAAT 1233
||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 1037 TAATAAGCGATGACGGAAAAGTTTATGCGTGCGGAAAAGAATCATTTGGGGAAGCTGAAT 1096
Query 1234 ACGGAGGGCAAGGGACTAAACCAGTTACAACTCCTCAGCTTGTAACATCTTTAAAAAACA 1293
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1097 ACGGAGGGCAAGGGACTCAACCAGTTACAACTCCTCAGCTTGTAACATCTTTAAAGAACA 1156
Query 1294 TATTTGTAGTGCAAGCAGCTATTGGGAATTACTTTACCGCTGTTCTCTCCCGAGAAGGAA 1353
||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1157 TATTTGTTGTGCAAGCGGCTATCGGAAATTACTTTACCGCTGTTCTCTCCCGAGAAGGAA 1216
Query 1354 AGGTTTATACATTCTCGTGGGGCAATGACGGTAGACTAGGACACCAAACTGAGGCTGCGG 1413
||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 1217 AGGTTTATACATTTTCGTGGGGCAACGACGGTAGACTAGGACACCAAACCGAGGCCGCGG 1276
Query 1414 ATGTCGAGCCTCGTCCTTTGTTAGGCCCACTCGAGAATGTACCCGTTGTGCAGATTGCTG 1473
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1277 ATGTCGAGCCCCGTCCTTTGTTAGGCCCTCTCGAGAATGTACCCGTTGTGCAGATTGCTG 1336
Query 1474 CTGGTTATTGCTACCTTCTTGCCTTAGCCTGTCAACCAAATGGCATGTCTGTTTACTCAG 1533
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1337 CTGGTTATTGCTACCTTCTTGCCTTAGCTTGTCAACCAAATGGCATGTCTGTTTACTCGG 1396
Query 1534 TTGGTTGCGGTTTGGGAGGCAAACTTGGTCATGGGTCAAGAACAGATGAGAAGTATCCTC 1593
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1397 TTGGTTGCGGTTTGGGAGGCAAACTTGGTCATGGCTCAAGAACGGATGAGAAGTATCCTC 1456
Query 1594 GGGTCATCGAGCAGTTTCAGATATTGAATCTTCAACCTAGGGTAGTTGCAGCGGGTGCTT 1653
|||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1457 GGGTTATCGAGCAGTTTAAGATATTGGATCTTCAACCTAGGGTAGTTGCAGCGGGTGCTT 1516
Query 1654 GGCATGCCGCGGTGGTAGGTCAGGATGGAAGAGTGTGCACTTGGGGTTGGGGAAGATATG 1713
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1517 GGCATGCTGCGGTGGTAGGTCAGGACGGAAGAGTGTGCACTTGGGGTTGGGGAAGATACG 1576
Query 1714 GATGTTTAGGTCACGGTAACGAGGAGTGTGAATCAGTCCCTAAGGTTGTTGAAGG-TCTA 1772
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 1577 GATGTTTAGGGCACGGTAACGAGGAGTGTGAATCAGTCCCTAAGGTTGTAGAAGGGT-TA 1635
Query 1773 AGCCATGTCAAAGCAGTTCATGTCGCAACAGGAGACTACACTACTTTTGTGGTCTCAGAC 1832
||||||||||| || ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1636 AGCCATGTCAAGGCGGTTCATGTCGCAACAGGCGATTACACTACTTTTGTGGTCTCAGAC 1695
Query 1833 GATGGTGATGTTTACTCGTTTGGCTGCGGCGAATCCGCTAGTCTCGGTCACCATCCATCC 1892
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1696 GATGGTGATGTTTACTCGTTTGGTTGCGGCGAATCCGCTAGTCTCGGTCACCATCCATCC 1755
Query 1893 TTTGATGAACAGGGTAATCGACATGCAAACGTGCTAAGTCCAACGGTAGTAACATCGCTA 1952
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1756 TTTGATGAACAGGGTAATCGACATGCAAACGTGCTAAGTCCAGCGGTAGTAACATCGCTG 1815
Query 1953 AAACAAGTGAACGAGCGGATGGTCCAGATAAGTCTAACGAACTCCATATACTGGAACGCT 2012
||||||| |||||||||| |||| ||||| |||||||||||||| ||||| |||||||||
Sbjct 1816 AAACAAGCGAACGAGCGGGTGGTTCAGATTAGTCTAACGAACTCTATATATTGGAACGCT 1875
Query 2013 CATACATTTGCGCTCACGGAATCGGGGAAGCTAT-TCGCGTTTGGTGCAGGCGATCAGGG 2071
||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1876 CATACGTTTGCGCTCACGGAATCGGGGAAGCTATAT-GCGTTTGGTGCAGGCGATCAGGG 1934
Query 2072 TCAGCTTGGAACAGAGCTTGGTAAGAACCAAAAAGAAAGGTGTGTACCGGAAAAAGTGGA 2131
|||||||||| ||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 1935 TCAGCTTGGAGCAGAGCTTGATAGGAACCGAAAAGAAAGGTGTGTACCGGAAAAAGTGGA 1994
Query 2132 TATCGATCTCAGCTAG 2147
||||||||||||||||
Sbjct 1995 TATCGATCTCAGCTAG 2010
Score = 300 bits (162), Expect = 4e-80
Identities = 213/235 (91%), Gaps = 13/235 (6%)
Strand=Plus/Plus
Query 2179 AACTACGTTTGACATCAAGGAAACAAAAACGCAAGAAAATTTGCGTTTGCTTTTTATGTT 2238
|||| |||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||
Sbjct 2011 AACTGCGTTTGACATCAAGCAAA-AAAAACGCAAGAAAAATTGCGTTTGCTATTTATGTT 2069
Query 2239 CATAAGACTTGGAAGCTTGTACAAAAAGGGGAATAACATAAACTTGTCTTTAACATTTCA 2298
||||||||||||||||||||||| ||| | | | | ||||||||||||||||||||
Sbjct 2070 CATAAGACTTGGAAGCTTGTACATAAA---G--TTA-AGGAACTTGTCTTTAACATTTCA 2123
Query 2299 TTGTATAGGGTTTTTAGATTATTCTAATTGTTCATTGGTT-AAGTTTTAGGTTATGTTGT 2357
||||||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 2124 TTGTATA-GG-TTTTAGATTATTCTAATTGTTCATT-GTTCAAGTTTTAGGTTATGTTGT 2180
Query 2358 TAATAATTATCAAATAATTTCATTAAATCAAATTA-TTGTCAGATTCAATTTCTA 2411
|||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 2181 TAATAATTGTCAAATAATTTCATTAAATCAA-TTAATTGTCAGATTCAATTTCTA 2234
Score = 150 bits (81), Expect = 4e-35
Identities = 92/97 (95%), Gaps = 1/97 (1%)
Strand=Plus/Plus
Query 115 TAAGTCCGCATAAAGAGACACCACAACTTTCTTTCTTCTTCATTCACTTCTATCAACGCC 174
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 51 TAAGTCCGCATAAAGAGACACCGCAACTTTCTTTCTTCTTCATTCACTTCTCTCAACGCC 110
Query 175 AAATTTGCAGACTTTCCCAGGACCAAAATTATATTaa 211
||||||||||||||||||||||| |||||| | ||||
Sbjct 111 AAATTTGCAGACTTTCCCAGGACGAAAATT-TCTTAA 146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92368844125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5