BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26110.1 Length=632 Score E Sequences producing significant alignments: (Bits) Value Ahg484375 jgi|Araly1|484375|fgenesh2_kg.5__367__AT3G26110.1 693 0.0 > Ahg484375 jgi|Araly1|484375|fgenesh2_kg.5__367__AT3G26110.1 Length=570 Score = 693 bits (375), Expect = 0.0 Identities = 527/596 (88%), Gaps = 27/596 (5%) Strand=Plus/Plus Query 10 aaataaaacaaaatacccataaaacatttttcaaaaaaaaaaaGTTTTTTGGGGATTACT 69 ||||||| |||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 1 AAATAAAGGAAAATACCCATAAAACATTTTT----AAAAAAAAGTTTTTTGGGCATTACT 56 Query 70 AAAT-AACTAAATTAAAAAATAATGGCGCGTCTTCACCTAGCTCTCCTCCTCCTCTTCGT 128 ||| || |||||| ||||||||||||||||||||| |||||||||||||||||||| | Sbjct 57 -AATAAAATAAATT-TAAAATAATGGCGCGTCTTCACGTAGCTCTCCTCCTCCTCTTCAT 114 Query 129 CGCTATCTCCGCCGTGATCGTATCAGCTGCTGAGAACGAAAAACCACCGTCAACCACCAC 188 |||||||||||||||||| |||||| ||||||| || || |||||||||||||||||||| Sbjct 115 CGCTATCTCCGCCGTGATTGTATCACCTGCTGATAATGATAAACCACCGTCAACCACCAC 174 Query 189 CGCCTCAGCTCCCACCGCTACAACTCCAACCGATGGCATTGGAGGTGATATAGCAGAGGG 248 ||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| || Sbjct 175 CGCCTCAGCTCCCACCGCTACAACTCCGACCGATGGCATTGGAGGTGATGTAGTAGAAGG 234 Query 249 TCCAGCTGATGACAATGCTATTGGAACAACTGACAACGACGATGCAGCTGTTACTCCCGA 308 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 235 TCCAGCTGATGACAATGCTATTGGAACAACTGACAACGACGATGCAGCTGTTACTCCAGA 294 Query 309 TGATGCCAATGGAGATGATGAAGTGGCAGTCGCCGGACCTATTGGAAGCGATGCTTCGTA 368 |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 295 TGATGCTGCCGGAGATGATGAAGTGGCAGTCGCCGGACCTATTGGAAGCGATTCTTCGTA 354 Query 369 CGCTAACTATCCTCCACCACAAAAAGAAGCTTCCGGAAGCGATGCCACCGTAGCTTTTGG 428 |||||||||||| ||||| ||| |||||||||||||||||| |||||||||||||||||| Sbjct 355 CGCTAACTATCCGCCACCTCAACAAGAAGCTTCCGGAAGCGGTGCCACCGTAGCTTTTGG 414 Query 429 CTTTGTCTCTGTTGTTGGTGCAGTTGCTGGATCGCTCTTCTTTTTCTAGAGTTGTGATCG 488 |||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||| Sbjct 415 CTTTGTCTCTGTTGTTGGTGCAATGGCTGGATCGCTCTTCTTTTTCTAGAGCTGTGATCG 474 Query 489 GCGCGCGAACTTATTACTATTGTAATAAAAATGTTTGTAATATTTTCTTGTTTTAGATGT 548 ||||| || | || | | |||| | || ||| || || | | | || Sbjct 475 GCGCG--AA-TG-TT--T---GAAATATTT-TCTT-GTAG-AT------GTATAA-A-GT 514 Query 549 ATTTTGACGATCCCTTCTTCGATGTAACATTGATTATATTGGGATGATACATATTT 604 |||||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||| Sbjct 515 ATTTTGACTATCCCTTCTTCGATGTAACATCGATTAAATTGGGATGATACATCTTT 570 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23140610619 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5