BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G26110.1

Length=632
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484375 jgi|Araly1|484375|fgenesh2_kg.5__367__AT3G26110.1          693    0.0  


> Ahg484375 jgi|Araly1|484375|fgenesh2_kg.5__367__AT3G26110.1
Length=570

 Score =  693 bits (375),  Expect = 0.0
 Identities = 527/596 (88%), Gaps = 27/596 (5%)
 Strand=Plus/Plus

Query  10   aaataaaacaaaatacccataaaacatttttcaaaaaaaaaaaGTTTTTTGGGGATTACT  69
            |||||||  ||||||||||||||||||||||    |||||||||||||||||| ||||||
Sbjct  1    AAATAAAGGAAAATACCCATAAAACATTTTT----AAAAAAAAGTTTTTTGGGCATTACT  56

Query  70   AAAT-AACTAAATTAAAAAATAATGGCGCGTCTTCACCTAGCTCTCCTCCTCCTCTTCGT  128
             ||| || ||||||  ||||||||||||||||||||| |||||||||||||||||||| |
Sbjct  57   -AATAAAATAAATT-TAAAATAATGGCGCGTCTTCACGTAGCTCTCCTCCTCCTCTTCAT  114

Query  129  CGCTATCTCCGCCGTGATCGTATCAGCTGCTGAGAACGAAAAACCACCGTCAACCACCAC  188
            |||||||||||||||||| |||||| ||||||| || || ||||||||||||||||||||
Sbjct  115  CGCTATCTCCGCCGTGATTGTATCACCTGCTGATAATGATAAACCACCGTCAACCACCAC  174

Query  189  CGCCTCAGCTCCCACCGCTACAACTCCAACCGATGGCATTGGAGGTGATATAGCAGAGGG  248
            ||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||
Sbjct  175  CGCCTCAGCTCCCACCGCTACAACTCCGACCGATGGCATTGGAGGTGATGTAGTAGAAGG  234

Query  249  TCCAGCTGATGACAATGCTATTGGAACAACTGACAACGACGATGCAGCTGTTACTCCCGA  308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  235  TCCAGCTGATGACAATGCTATTGGAACAACTGACAACGACGATGCAGCTGTTACTCCAGA  294

Query  309  TGATGCCAATGGAGATGATGAAGTGGCAGTCGCCGGACCTATTGGAAGCGATGCTTCGTA  368
            ||||||    |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  295  TGATGCTGCCGGAGATGATGAAGTGGCAGTCGCCGGACCTATTGGAAGCGATTCTTCGTA  354

Query  369  CGCTAACTATCCTCCACCACAAAAAGAAGCTTCCGGAAGCGATGCCACCGTAGCTTTTGG  428
            |||||||||||| ||||| ||| |||||||||||||||||| ||||||||||||||||||
Sbjct  355  CGCTAACTATCCGCCACCTCAACAAGAAGCTTCCGGAAGCGGTGCCACCGTAGCTTTTGG  414

Query  429  CTTTGTCTCTGTTGTTGGTGCAGTTGCTGGATCGCTCTTCTTTTTCTAGAGTTGTGATCG  488
            |||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct  415  CTTTGTCTCTGTTGTTGGTGCAATGGCTGGATCGCTCTTCTTTTTCTAGAGCTGTGATCG  474

Query  489  GCGCGCGAACTTATTACTATTGTAATAAAAATGTTTGTAATATTTTCTTGTTTTAGATGT  548
            |||||  || |  ||  |   | ||||    | || |||  ||      || | | | ||
Sbjct  475  GCGCG--AA-TG-TT--T---GAAATATTT-TCTT-GTAG-AT------GTATAA-A-GT  514

Query  549  ATTTTGACGATCCCTTCTTCGATGTAACATTGATTATATTGGGATGATACATATTT  604
            |||||||| ||||||||||||||||||||| ||||| ||||||||||||||| |||
Sbjct  515  ATTTTGACTATCCCTTCTTCGATGTAACATCGATTAAATTGGGATGATACATCTTT  570



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23140610619


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5