BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26120.1
Length=2056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322753 jgi|Araly1|322753|fgenesh1_pm.C_scaffold_5000297 2577 0.0
Ahg475881 jgi|Araly1|475881|fgenesh2_kg.2__1011__AT1G67770.1 69.4 1e-10
> Ahg322753 jgi|Araly1|322753|fgenesh1_pm.C_scaffold_5000297
Length=1812
Score = 2577 bits (1395), Expect = 0.0
Identities = 1711/1856 (92%), Gaps = 52/1856 (3%)
Strand=Plus/Plus
Query 1 ATGGAAGACTCCAGACTTTTTCCGTTCGTCGGAAACTTAGACCCTCGTGCTCAAGAGTTT 60
|||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGATTCTAGACTTTTTCCGTTCGCCGGAAACTTAGACCCTCGTGCTCAAGAGTTT 60
Query 61 ATACCA-TTCAACCCTATctcctccggttttcactttccgtacactcctcctcctccaca 119
|||||| || ||||||| ||||||||||||| |||| |||| |||||||||| | |||
Sbjct 61 ATACCACTT-AACCCTACCTCCTCCGGTTTTTACTTCCCGTTCACTCCTCCT--T-CACC 116
Query 120 gcttcctcctccgttacctccgTCGTCGTACGGATTATCTCCGACGGAGCCAAGAGTTTT 179
||||||||| |||||| | || ||| | | | ||||||||||||||||
Sbjct 117 GCTTCCTCCGCCGTTA----CATC--CGT-C-G------T----CGGAGCCAAGAGTTTT 158
Query 180 CACATTCTTCAATATCCCACCACATCCGATGATGTTTTCTCCTCCTCCTCCTCAaccacc 239
|||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 159 CACATTCTTCAACATCCCACCACATCCGGTGATGTTTTCTCCTCCTCCTTCTCAACCACC 218
Query 240 a-c--caccaccaccGCGTCCATGTTTCAACGGCGTTTCGGCAGCTCAACGGCTTCCTCT 296
| | |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 219 ACCATCACCACCACCGCGTCCGTGTTTTAACGGCGTTTCGGCAGCTCAACGACTTCCTCC 278
Query 297 GCCGTCAAATACTCCGACGCGATCTCTCTCTTTGATCTCCGTACCACGTGACGTAACCGA 356
|||||||||| ||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 279 GCCGTCAAATTCTCCGACGCGATCTCTCTCATTGATCTCCGTACCGCGTGACGTCACCGA 338
Query 357 GTCTACGGTGAGACGTGACTTGGAGGTTTACGGCGACGTTCGTGGCGTGCAAATGGAGAG 416
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 GTCTACAGTGAGACGTGACTTGGAGGTTTACGGCGACGTTCGTGGCGTGCAAATGGAGAG 398
Query 417 AATCTCTGAAGGAATCGTGACCGTCCATTTCTACGATATACGTGACGCTAAAAGAGCGGT 476
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 399 AATCTCTGAAGGAATCGTGACCGTCCATTTCTACGATATCCGTGACGCTAAAAGAGCGGT 458
Query 477 ACGTGAAGTTTGTGGTAGACACATGCAGCAACAAGCTAGAGGTGGAAGCGTCTGGAGCTC 536
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 459 TCGAGAAGTTTGTGGTAGACACATGCAGCAACAAGCCAGAGGTGGAAGCGTTTGGAGCTC 518
Query 537 ACCTTCTACTTCATCGGCGCGTGGGTTTGTTTCCGGTAGACCTGTGTGGGCTCAGTTCGT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACCTTCTACTTCATCGGCGCGTGGGTTTGTTTCCGGTAGACCTGTGTGGGCTCAGTTCGT 578
Query 597 AGTTCCGGCGACTAGTGCCGTTCCCGGAGGTTGTAACCAAGGAACGTTAGTAATATTTAA 656
||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 579 AGTTCCGGCCACTAGCGCCGTTCCCGGAGGTTGTAACCAGGGAACGTTAGTTATATTTAA 638
Query 657 CTTAGACCCTGAGGTCTCTTCCATTACTCTCAGACAGATTTTCCAAGTTTACGGTCCGAT 716
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 639 CTTAGACCCTGAAGTCTCTTCCATTACTCTCAGACAGTTTTTCCAAGTTTACGGTCCGAT 698
Query 717 CAAAGAGTTGAGAGAGACACCGTACAAAAAACATCAAAGGTTCGTTGAGTTTTATGATGT 776
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 699 CAAAGAGTTGAGAGAGACACCGTACAAGAAACATCAAAGGTTCATTGAGTTTTATGATGT 758
Query 777 GAGAGACGCGGCGAGAGCGTTTGATCGAATGAATGGTAAAGAGATTGGTGGGAAGCAAGT 836
||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 759 AAGAGATGCGGCGAGAGCGTTTGATCGAATGAATGGTGAAGAGATCGGTGGGAAGCAAGT 818
Query 837 TGTGATCGAATTTAGTCGACCTGGTGGAATTAAGAACAGGTTCAGGTCATCTAGGCAACC 896
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 819 TGTGATCGAATTTAGTCGACCTGGTGGAATTAAGAACAAGTTCAGGTCATCTAGGCAACC 878
Query 897 GCAGCTACCATTTCAACCGCTTCGAGAGCCACCAATCCTAATTCCTCCTTTGAGGCGGCC 956
||||||||| ||||||||||||| | |||||||||| ||| |||||||||||||||||||
Sbjct 879 GCAGCTACCGTTTCAACCGCTTCAACAGCCACCAATTCTATTTCCTCCTTTGAGGCGGCC 938
Query 957 AGTATCTTTCATCAAAGATAAAAACAAGAATGTGAGCCCTAAAAATGGAGTTATTGCTGT 1016
|||| || |||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 939 AGTAACTCTCATGAAAGATAAAAACAAGAATGTGAGCCCTAAAAATGGAATTATTGCTGT 998
Query 1017 TGATGCTTCTATGCGTTCCTTATGTATCATCGATGCTGACGATAATAAGACTCGAGGAAC 1076
|| ||||||||||||||| ||||||||||| | || ||||||||||||||| | |
Sbjct 999 TGGTGCTTCTATGCGTTCGTTATGTATCATTGGTGATGACGATAATAAGAC-C------C 1051
Query 1077 CCGAGGAACGGAATCCGAATGCGCGGAGACAAAAAGCAAGAATGTGGCTAAGTGGGGGAA 1136
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1052 --GAGGAACGGAATCCGAATGTGCGGAGACAAAGAGCAAGAATGTGGCTAAGTGGGGGAA 1109
Query 1137 GAAAAGACAGATGAAGAACATGGAACTAAGTCAGTTTCTTATCAGTGAAGAAACCATGGA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 GAAAAGACAGATGAAGAACATGGAACTAAGTCAGTTTCTTATCAGTGAAGAAACCATGGA 1169
Query 1197 AGATCCGAGTTGCAGAGATCCACGTACCACTTTGATGATCAAGAACATACCAAACAAGTA 1256
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1170 AGATCCGAGTTGCAGAGATCCACGTACTACTTTGATGATCAAGAACATACCAAACAAGTA 1229
Query 1257 CAGTCAAAAGCTACTGTTGGATATGTTGGACAAGCATTGCATTCACATAAACGAAGCAAT 1316
||||||||||||||| ||||||||| | ||||| |||||||||||||| ||| |||||||
Sbjct 1230 CAGTCAAAAGCTACTCTTGGATATGCTAGACAATCATTGCATTCACATCAACAAAGCAAT 1289
Query 1317 CACCGAGGAGCACAATAAACATGAGTCTCATCATCAGCCGTATTCTTCTTATGATTTCGT 1376
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 CACCGAGGAGCACGATGAACATGAGTCTCATCATCAGCCGTATTCTTCTTATGATTTCGT 1349
Query 1377 GTATCTCCCCATGGATTTCAACAACAAGTGCAATGTTGGTTATGGGTTTGTGAACATGAC 1436
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1350 GTATCTCCCCATGGATTTCAACAATAAGTGCAATGTTGGTTATGGGTTTGTGAACATGAC 1409
Query 1437 ATCTCCGGAAGCAGCTTGGAGGTTTTACAAGGCATTTCATGGTCAGCGTTGGGAGGTTTT 1496
||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||
Sbjct 1410 ATCTCCGGAAGCAGCTTGGAGGTTTTACAAGGCGTTTCATCATCAACGTTGGGAGGTTTT 1469
Query 1497 TAATTCGCATAAGATTTGCCAAATCACATATGCGAGAGTTCAGGGTTTGGAGGATCTAAA 1556
|||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1470 TAATTCGCGTAAGATTTGCCAGATCACATATGCAAGAGTTCAGGGTTTGGAGGATCTAAA 1529
Query 1557 GGAACACTTCAAGAGCTCGAAATTTCCATGCGAGGCTGAGCTATACCTGCCGGTGGTCTT 1616
|||||||||||||||||| || ||||| | ||||||||||||||||||||| ||||||||
Sbjct 1530 GGAACACTTCAAGAGCTCTAAGTTTCCGTACGAGGCTGAGCTATACCTGCCAGTGGTCTT 1589
Query 1617 CTCGCCTCCACGAGATGGGAAGCAG-TTAACAGAACCTGTCTCCATCAACATAACCATCA 1675
||||||||||||||| |||||| || |||||||||||||||||||||||||| | | |
Sbjct 1590 CTCGCCTCCACGAGACGGGAAG-AGGTTAACAGAACCTGTCTCCATCAACAT--C-A--A 1643
Query 1676 ACGGCTGCACCAGACTTAATCATAATCATTTTGAGCAAACAGTCGGTCAAGATCACTTTC 1735
|||||||||||||||||||||| | || |||| || | |||||||||||||| ||
Sbjct 1644 -CGGCTGCACCAGACTTAATCAT---C-TT--GAGCGAATGGACGGTCAAGATCACTCTC 1696
Query 1736 TGAGTGGATCATGTTGTGACAGTGACCATGATAACAGTCATGAAGATGGATTTTCCGGCA 1795
||||| |||||| |||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 1697 TGAGTAGATCATATTGTGATAGTGACCATGATAATAGTCACGAAGATGGATTTTCCGGCA 1756
Query 1796 GTAGC-G--TAGACTGTGGCCGGAGTATCACCGTGGAAGGAGAAACATCTTTCTAG 1848
|||| | |||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1757 GTAGTAGCATAGACTGTGGCCGGTGTATCACATTGGAAGGAGAAACATCTTTCTAG 1812
> Ahg475881 jgi|Araly1|475881|fgenesh2_kg.2__1011__AT1G67770.1
Length=1560
Score = 69.4 bits (37), Expect = 1e-10
Identities = 85/108 (79%), Gaps = 4/108 (4%)
Strand=Plus/Plus
Query 345 TGACGTAACCGAGTCTA-CGGTGAGACGTGACTTGGAGGT-TTACGGCGACGTTCGTGGC 402
|||||| |||||| | | | | ||||| ||| |||| | || ||| || || |||||
Sbjct 231 TGACGTCACCGAGAC-ATCTCTAAGACGAGACATGGAACTGTT-CGGTGAAGTCCGTGGA 288
Query 403 GTGCAAATGGAGAGAATCTCTGAAGGAATCGTGACCGTCCATTTCTAC 450
|| |||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 289 GTCCAAATGGAAAGAGTAGATGAAGGAATCGTGACCGTCCATTTCTAC 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77323197350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5