BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26120.1 Length=2056 Score E Sequences producing significant alignments: (Bits) Value Ahg322753 jgi|Araly1|322753|fgenesh1_pm.C_scaffold_5000297 2577 0.0 Ahg475881 jgi|Araly1|475881|fgenesh2_kg.2__1011__AT1G67770.1 69.4 1e-10 > Ahg322753 jgi|Araly1|322753|fgenesh1_pm.C_scaffold_5000297 Length=1812 Score = 2577 bits (1395), Expect = 0.0 Identities = 1711/1856 (92%), Gaps = 52/1856 (3%) Strand=Plus/Plus Query 1 ATGGAAGACTCCAGACTTTTTCCGTTCGTCGGAAACTTAGACCCTCGTGCTCAAGAGTTT 60 |||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1 ATGGAAGATTCTAGACTTTTTCCGTTCGCCGGAAACTTAGACCCTCGTGCTCAAGAGTTT 60 Query 61 ATACCA-TTCAACCCTATctcctccggttttcactttccgtacactcctcctcctccaca 119 |||||| || ||||||| ||||||||||||| |||| |||| |||||||||| | ||| Sbjct 61 ATACCACTT-AACCCTACCTCCTCCGGTTTTTACTTCCCGTTCACTCCTCCT--T-CACC 116 Query 120 gcttcctcctccgttacctccgTCGTCGTACGGATTATCTCCGACGGAGCCAAGAGTTTT 179 ||||||||| |||||| | || ||| | | | |||||||||||||||| Sbjct 117 GCTTCCTCCGCCGTTA----CATC--CGT-C-G------T----CGGAGCCAAGAGTTTT 158 Query 180 CACATTCTTCAATATCCCACCACATCCGATGATGTTTTCTCCTCCTCCTCCTCAaccacc 239 |||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 159 CACATTCTTCAACATCCCACCACATCCGGTGATGTTTTCTCCTCCTCCTTCTCAACCACC 218 Query 240 a-c--caccaccaccGCGTCCATGTTTCAACGGCGTTTCGGCAGCTCAACGGCTTCCTCT 296 | | |||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct 219 ACCATCACCACCACCGCGTCCGTGTTTTAACGGCGTTTCGGCAGCTCAACGACTTCCTCC 278 Query 297 GCCGTCAAATACTCCGACGCGATCTCTCTCTTTGATCTCCGTACCACGTGACGTAACCGA 356 |||||||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||| Sbjct 279 GCCGTCAAATTCTCCGACGCGATCTCTCTCATTGATCTCCGTACCGCGTGACGTCACCGA 338 Query 357 GTCTACGGTGAGACGTGACTTGGAGGTTTACGGCGACGTTCGTGGCGTGCAAATGGAGAG 416 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 339 GTCTACAGTGAGACGTGACTTGGAGGTTTACGGCGACGTTCGTGGCGTGCAAATGGAGAG 398 Query 417 AATCTCTGAAGGAATCGTGACCGTCCATTTCTACGATATACGTGACGCTAAAAGAGCGGT 476 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 399 AATCTCTGAAGGAATCGTGACCGTCCATTTCTACGATATCCGTGACGCTAAAAGAGCGGT 458 Query 477 ACGTGAAGTTTGTGGTAGACACATGCAGCAACAAGCTAGAGGTGGAAGCGTCTGGAGCTC 536 || |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 459 TCGAGAAGTTTGTGGTAGACACATGCAGCAACAAGCCAGAGGTGGAAGCGTTTGGAGCTC 518 Query 537 ACCTTCTACTTCATCGGCGCGTGGGTTTGTTTCCGGTAGACCTGTGTGGGCTCAGTTCGT 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 519 ACCTTCTACTTCATCGGCGCGTGGGTTTGTTTCCGGTAGACCTGTGTGGGCTCAGTTCGT 578 Query 597 AGTTCCGGCGACTAGTGCCGTTCCCGGAGGTTGTAACCAAGGAACGTTAGTAATATTTAA 656 ||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 579 AGTTCCGGCCACTAGCGCCGTTCCCGGAGGTTGTAACCAGGGAACGTTAGTTATATTTAA 638 Query 657 CTTAGACCCTGAGGTCTCTTCCATTACTCTCAGACAGATTTTCCAAGTTTACGGTCCGAT 716 |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 639 CTTAGACCCTGAAGTCTCTTCCATTACTCTCAGACAGTTTTTCCAAGTTTACGGTCCGAT 698 Query 717 CAAAGAGTTGAGAGAGACACCGTACAAAAAACATCAAAGGTTCGTTGAGTTTTATGATGT 776 ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 699 CAAAGAGTTGAGAGAGACACCGTACAAGAAACATCAAAGGTTCATTGAGTTTTATGATGT 758 Query 777 GAGAGACGCGGCGAGAGCGTTTGATCGAATGAATGGTAAAGAGATTGGTGGGAAGCAAGT 836 ||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 759 AAGAGATGCGGCGAGAGCGTTTGATCGAATGAATGGTGAAGAGATCGGTGGGAAGCAAGT 818 Query 837 TGTGATCGAATTTAGTCGACCTGGTGGAATTAAGAACAGGTTCAGGTCATCTAGGCAACC 896 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 819 TGTGATCGAATTTAGTCGACCTGGTGGAATTAAGAACAAGTTCAGGTCATCTAGGCAACC 878 Query 897 GCAGCTACCATTTCAACCGCTTCGAGAGCCACCAATCCTAATTCCTCCTTTGAGGCGGCC 956 ||||||||| ||||||||||||| | |||||||||| ||| ||||||||||||||||||| Sbjct 879 GCAGCTACCGTTTCAACCGCTTCAACAGCCACCAATTCTATTTCCTCCTTTGAGGCGGCC 938 Query 957 AGTATCTTTCATCAAAGATAAAAACAAGAATGTGAGCCCTAAAAATGGAGTTATTGCTGT 1016 |||| || |||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 939 AGTAACTCTCATGAAAGATAAAAACAAGAATGTGAGCCCTAAAAATGGAATTATTGCTGT 998 Query 1017 TGATGCTTCTATGCGTTCCTTATGTATCATCGATGCTGACGATAATAAGACTCGAGGAAC 1076 || ||||||||||||||| ||||||||||| | || ||||||||||||||| | | Sbjct 999 TGGTGCTTCTATGCGTTCGTTATGTATCATTGGTGATGACGATAATAAGAC-C------C 1051 Query 1077 CCGAGGAACGGAATCCGAATGCGCGGAGACAAAAAGCAAGAATGTGGCTAAGTGGGGGAA 1136 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1052 --GAGGAACGGAATCCGAATGTGCGGAGACAAAGAGCAAGAATGTGGCTAAGTGGGGGAA 1109 Query 1137 GAAAAGACAGATGAAGAACATGGAACTAAGTCAGTTTCTTATCAGTGAAGAAACCATGGA 1196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1110 GAAAAGACAGATGAAGAACATGGAACTAAGTCAGTTTCTTATCAGTGAAGAAACCATGGA 1169 Query 1197 AGATCCGAGTTGCAGAGATCCACGTACCACTTTGATGATCAAGAACATACCAAACAAGTA 1256 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1170 AGATCCGAGTTGCAGAGATCCACGTACTACTTTGATGATCAAGAACATACCAAACAAGTA 1229 Query 1257 CAGTCAAAAGCTACTGTTGGATATGTTGGACAAGCATTGCATTCACATAAACGAAGCAAT 1316 ||||||||||||||| ||||||||| | ||||| |||||||||||||| ||| ||||||| Sbjct 1230 CAGTCAAAAGCTACTCTTGGATATGCTAGACAATCATTGCATTCACATCAACAAAGCAAT 1289 Query 1317 CACCGAGGAGCACAATAAACATGAGTCTCATCATCAGCCGTATTCTTCTTATGATTTCGT 1376 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1290 CACCGAGGAGCACGATGAACATGAGTCTCATCATCAGCCGTATTCTTCTTATGATTTCGT 1349 Query 1377 GTATCTCCCCATGGATTTCAACAACAAGTGCAATGTTGGTTATGGGTTTGTGAACATGAC 1436 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1350 GTATCTCCCCATGGATTTCAACAATAAGTGCAATGTTGGTTATGGGTTTGTGAACATGAC 1409 Query 1437 ATCTCCGGAAGCAGCTTGGAGGTTTTACAAGGCATTTCATGGTCAGCGTTGGGAGGTTTT 1496 ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| Sbjct 1410 ATCTCCGGAAGCAGCTTGGAGGTTTTACAAGGCGTTTCATCATCAACGTTGGGAGGTTTT 1469 Query 1497 TAATTCGCATAAGATTTGCCAAATCACATATGCGAGAGTTCAGGGTTTGGAGGATCTAAA 1556 |||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1470 TAATTCGCGTAAGATTTGCCAGATCACATATGCAAGAGTTCAGGGTTTGGAGGATCTAAA 1529 Query 1557 GGAACACTTCAAGAGCTCGAAATTTCCATGCGAGGCTGAGCTATACCTGCCGGTGGTCTT 1616 |||||||||||||||||| || ||||| | ||||||||||||||||||||| |||||||| Sbjct 1530 GGAACACTTCAAGAGCTCTAAGTTTCCGTACGAGGCTGAGCTATACCTGCCAGTGGTCTT 1589 Query 1617 CTCGCCTCCACGAGATGGGAAGCAG-TTAACAGAACCTGTCTCCATCAACATAACCATCA 1675 ||||||||||||||| |||||| || |||||||||||||||||||||||||| | | | Sbjct 1590 CTCGCCTCCACGAGACGGGAAG-AGGTTAACAGAACCTGTCTCCATCAACAT--C-A--A 1643 Query 1676 ACGGCTGCACCAGACTTAATCATAATCATTTTGAGCAAACAGTCGGTCAAGATCACTTTC 1735 |||||||||||||||||||||| | || |||| || | |||||||||||||| || Sbjct 1644 -CGGCTGCACCAGACTTAATCAT---C-TT--GAGCGAATGGACGGTCAAGATCACTCTC 1696 Query 1736 TGAGTGGATCATGTTGTGACAGTGACCATGATAACAGTCATGAAGATGGATTTTCCGGCA 1795 ||||| |||||| |||||| |||||||||||||| ||||| ||||||||||||||||||| Sbjct 1697 TGAGTAGATCATATTGTGATAGTGACCATGATAATAGTCACGAAGATGGATTTTCCGGCA 1756 Query 1796 GTAGC-G--TAGACTGTGGCCGGAGTATCACCGTGGAAGGAGAAACATCTTTCTAG 1848 |||| | |||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 1757 GTAGTAGCATAGACTGTGGCCGGTGTATCACATTGGAAGGAGAAACATCTTTCTAG 1812 > Ahg475881 jgi|Araly1|475881|fgenesh2_kg.2__1011__AT1G67770.1 Length=1560 Score = 69.4 bits (37), Expect = 1e-10 Identities = 85/108 (79%), Gaps = 4/108 (4%) Strand=Plus/Plus Query 345 TGACGTAACCGAGTCTA-CGGTGAGACGTGACTTGGAGGT-TTACGGCGACGTTCGTGGC 402 |||||| |||||| | | | | ||||| ||| |||| | || ||| || || ||||| Sbjct 231 TGACGTCACCGAGAC-ATCTCTAAGACGAGACATGGAACTGTT-CGGTGAAGTCCGTGGA 288 Query 403 GTGCAAATGGAGAGAATCTCTGAAGGAATCGTGACCGTCCATTTCTAC 450 || |||||||| ||| | |||||||||||||||||||||||||||| Sbjct 289 GTCCAAATGGAAAGAGTAGATGAAGGAATCGTGACCGTCCATTTCTAC 336 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77323197350 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5