BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26125.1
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484379 jgi|Araly1|484379|fgenesh2_kg.5__371__AT3G26125.1 2399 0.0
> Ahg484379 jgi|Araly1|484379|fgenesh2_kg.5__371__AT3G26125.1
Length=1611
Score = 2399 bits (1299), Expect = 0.0
Identities = 1506/1607 (94%), Gaps = 9/1607 (1%)
Strand=Plus/Plus
Query 23 TGTCATTGATAGATCGCATCTCTGGTCATCTCTGTCTTCAAGATGTATCAATTGCGTTGT 82
||||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||||||
Sbjct 11 TGTCATTGATAGATCGCATTTCTACTCATCTTTGTCTTCAAGATGTATCTATTGCGTTGT 70
Query 83 TAGGTTTATTCCTTTTCGGTTGCTTGCAAGCGAAGTTAACCAACAAAGGCGAACCAGTAC 142
|||||||||||||||| |||||||||||||| ||| ||||||||||||| | |||||| |
Sbjct 71 TAGGTTTATTCCTTTTTGGTTGCTTGCAAGCCAAGCTAACCAACAAAGGTGGACCAGTGC 130
Query 143 AATGGCCTGTGTTTGGGATAACTCCCGAGTTCTTCCTTCATGTTCACGATATGTTTGGAT 202
||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| ||||
Sbjct 131 AATGGCCTGTGTTTGGGATCACTCCCGAGTTCTTTCTTCATGTTCACGATGTGTTCGGAT 190
Query 203 GGGTCACCCGATGTTTGACGAAAAGCCGAGGAACGTTTCCTTACCAAGGAATCTGGTTTA 262
|||| || || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 191 GGGTTACACGGTGTTTGACGAAAAGTCGAGGAACGTTTCCTTACCAAGGAATCTGGTTTA 250
Query 263 GTGGATCTTACGGAGCCATGACTAGTGTTCCTGCAAACATCGAATACATGCTCAAAACCA 322
|||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 251 GTGGATCTTATGGAGCTATGACTAGTGTTCCTGCAAACATTGAATACATGCTCAAAACCA 310
Query 323 ATTTCAAGAACTTTCCTAAAGGAGAGTTTTACAAAGAGAGATTCCGTGACTTACTCGAAG 382
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 311 ATTTCAAGAACTTCCCTAAAGGAGAGTTTTACAAAGAGAGATTCCGCGATTTACTCGAAG 370
Query 383 ATGGTATTTTCAATGCGGATGATGAATCTTGGAAAGAACAGAGACGGATCATCATAACAG 442
||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |
Sbjct 371 ATGGTATTTTCAATGCGGATGATGAATCTTGGAAAGAGCAGAGGCGGATTATCATAACTG 430
Query 443 AAATGCATTCCACTCGCTTCGTGGATCATTCTTTCCAGACGACGAGAGATTTGATAGAGA 502
| |||||||| ||||||||||| ||||||||||| || |||||||||||||||||| |||
Sbjct 431 AGATGCATTCGACTCGCTTCGTCGATCATTCTTTTCAAACGACGAGAGATTTGATACAGA 490
Query 503 GGAAGCTTTTAAAAGTGATGGAGAGTTTCTCCAAGTCACAAGAAGCTTTTGATCTTCAAG 562
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 491 GGAAGCTCTTGAAAGTGATGGAGAGTTTTTCCAAGTCACAAGAAGCTTTTGATCTTCAAG 550
Query 563 AGATTCTTTTACGGTTAACATTTGATAATATCTGCATCGCGGGTCTTGGAGATGATCCGG 622
||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 551 AGATTCTTTTACGGTTAACGTTCGATAATATCTGCATCGCTGGTCTTGGAGATGATCCGG 610
Query 623 GGACTTTGGATGATGATCTTCCTCACGTTCCATTCGCCAAAGCGTTTGAAGAAGCAACAG 682
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 611 GGACTTTAGATGATGATCTTCCCCACGTTCCATTCGCTAAAGCGTTTGAAGAAGCAACAG 670
Query 683 AGTCTACTCTGTTTCGGTTCATGATTCCGCCTTTTGTGTGGAAACCAATGAAGTTTTTCG 742
| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 671 AATCTACTCTGTTTCGGTTCATGATTCCGCCATTTGTGTGGAAACCGATGAAGTTTTTTG 730
Query 743 ATATAGGGTATGAGAAAGGGCTTAGGGAAGCGGTTGAGACGGTTCACAACTTTATCGACA 802
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 731 ATATAGGGTATGAGAAAGGGCTGAGGGAAGCGGTTGAGACGGTTCACAAGTTTATCGACA 790
Query 803 AGATGGTTGTT-GAACGAATCGCGATGCTTAAGGACCAAGGAACATTAGCGAATAGCAAA 861
|||||||| || || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 791 AGATGGTT-TTCGAGCGAATCGCGATGCTTAAGGATGAAGGAACATTAGCGAATAGCAAA 849
Query 862 TCCGATGTCCTCTCGAGGCTAATACAGATCGAAAGTCACAAAAGAGGCGATGAAAATGAT 921
||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 850 TCCGATGTCCTCTCGAGACTAATCCAGATCGAAAGTCATAAAAGAGGCGATGAAAATGAT 909
Query 922 CGATTCACCGCCAAGTTTTTCAGACAGTTCTGCACAAGCTTCATCTTAGCCGGACGAGAC 981
|||||||| |||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct 910 AGATTCACCATTAAGTTTTTCAGACAGTTCTGTACAAGCTTTATCTTAGCGGGACGAGAC 969
Query 982 ACGAGTTCCGTCGCGCTTACTTGGTTCTTCTGGTTGATAACAAAACACCCGGAAGTCGAA 1041
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 970 ACGAGTTCCGTCGCGCTTACTTGGTTCTTCTGGTTGATAACAAAACACCCTGAAGTCGAA 1029
Query 1042 ACCAAGATCCTTCACGAAATCAGAGAAATCTTGAACCAAAGAGAGA-AGAACAAGTACAA 1100
||||||||||| |||||||||||||||||||||| |||||||| || | ||||| | ||
Sbjct 1030 ACCAAGATCCTCCACGAAATCAGAGAAATCTTGAGCCAAAGAG-GACATAACAACAATAA 1088
Query 1101 GCTTGATGAAACCGGAGAAA-AGGAGAGTTCTCGTCACTTCACAGTCAAAGAACTTAACG 1159
| | |||||| ||||||| | ||||| | |||||||||||||||| ||||| ||||
Sbjct 1089 TC-T--TGAAACTGGAGAAACA-GAGAGGGGTTGTCACTTCACAGTCAAGGAACTAAACG 1144
Query 1160 ATATGGTTTATCTACAAGCAGCATTGTCAGAATCTCTTAGACTCTATCCACCAATTCCAA 1219
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1145 ATATGGTTTATCTACAAGCAGCATTGTCAGAAGCTCTTAGACTCTATCCACCAATTCCAA 1204
Query 1220 TGGAAATGAAACAAGCGACCGAGGAAGATGTGTTTCCGGATGGAACTTTCTTGAGAAAAG 1279
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1205 TGGAAATGAAACAAGCGACCGAGGAAGATGTGTTTCCTGATGGAACTTTCTTGAGAAAAG 1264
Query 1280 GCTCAAGGGTTTACTTCTCAGTCTATGCAATGGGAAGGATGGAATCGATTTGGGGAAAAG 1339
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1265 GCTCGCGGGTTTACTTCTCAGTCTATGCAATGGGAAGGATGGAATCAATTTGGGGAAAAG 1324
Query 1340 ACTGTGAAATGTTCAAACCAGAAAGATGGATACAAGGAGGGCAATACGTGAGTGATGATC 1399
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1325 ACTGTGAAATGTTCAAACCAGAAAGATGGATACAAGGAGGGCAATACGTTAGTGATGATC 1384
Query 1400 AGTTTAAATACGTCGTGTTCAATGCAGGTCCAAGACTTTGTTTAGGGAAAACATTTGCTT 1459
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1385 AGTTTAAATACGTCGTGTTCAATGCCGGTCCAAGGCTTTGTTTAGGGAAAACATTTGCTT 1444
Query 1460 ACTTGCAGATGAAAATGGTGGCTGCTTCGATCTTGCTGAATTACTCAATCAAGGTTGATC 1519
|||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||
Sbjct 1445 ACTTGCAGATGAAAATGGTGGCTGCTTCAATCTTGTTGAATTACTCAATCATGGTTGATC 1504
Query 1520 AAGATCATGTTGTTGTTCCGCGAGTAACAACGACTTTGTATATGAAACATGGTCTTAAGG 1579
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 AAGATCACGTTGTTGTTCCGCGAGTAACAACGACTTTGTATATGAAACATGGTCTTAAGG 1564
Query 1580 TCAGGATTACACCGAGATCTCTAGAAGAGAAGAAGCAAGATTCATAA 1626
||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1565 TCAGGATTATACCGAGATCTCTAGAGGAGAAGAAGCAAGATTCATAA 1611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60944392000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5