BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26130.1
Length=1656
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896474 jgi|Araly1|896474|Al_scaffold_0005_440 2483 0.0
> Ahg896474 jgi|Araly1|896474|Al_scaffold_0005_440
Length=1641
Score = 2483 bits (1344), Expect = 0.0
Identities = 1539/1634 (94%), Gaps = 10/1634 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAAATTCTTCTTCATCTCTGTCTTTCTTCTTCCCTACGTCATCACCACTTTCGCT 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGAAAAATTCTTCTTCATCTCTGTCTTTCTTCTTCCTTACGTCATCACCACTTTCGCT 60
Query 61 TTCCCTCCCTCCACCGACTCACGCTGGATCGTCGACGACGGCAACAAAGGGCGGCGCGTG 120
||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 61 TTCCCTCTCTCCACCGACTCACGCTGGATCGTCGACGACGGCAACAAAGGTCGTCGCGTG 120
Query 121 AAACTCACGTGCGTCAACTGGCCGTCGCATCTCGAAACCGCGGTGGCTGAAGGGCTT-AG 179
|| ||||||||||||||||||||||||||||| |||||||||||||| |||||| || ||
Sbjct 121 AAGCTCACGTGCGTCAACTGGCCGTCGCATCTAGAAACCGCGGTGGCGGAAGGG-TTAAG 179
Query 180 CAAGCAGCCGTTGGA-TGCGATCGCAGAGAAGATAGTCTCAATGGGTTTCAATTGCGTTA 238
||||||| | ||||| | ||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 180 CAAGCAGTCATTGGACT-CGATCGCCGAGAAGATCGTCTCAATGGGTTTCAATTGTGTTA 238
Query 239 GATTGACTTGGCCTCTCTACTTAGCCACCGATGAATCTTTCTCTGCTTTTATGACAGTGA 298
|||||||||||||||||||||||||||| |||||||||||||||| | ||||||| ||||
Sbjct 239 GATTGACTTGGCCTCTCTACTTAGCCACTGATGAATCTTTCTCTGATATTATGACTGTGA 298
Query 299 GACAATCACTCCGCAAGTTTCGTC-TCTTTGAAGCTGTTTCTGGTTTTCAAACTCACAAT 357
||||||| || ||||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct 299 GACAATCTCTTCGCAAGTTTCGTCTTC-TTGAAGCTGTTTCTGGTTTTCAAACTCATAAT 357
Query 358 CCAACGATTCTTGATCTTCCTCTAATCAAAGCTTTCCAGGAAGTAGTGTATTGTCTTGAA 417
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 358 CCAACGATTCTTGATCTTCCTCTAATCAAAGCTTTCCAGGAAGTAGTGTCTTGTCTTGGA 417
Query 418 AAGCATAGAGTAATGGTTATCTTAGACAATCACATAAGCCAACCTGGTTGGTGTTGTAGT 477
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 418 AAGCATAGAGTAATGGTGATATTAGACAATCACATAAGCCAACCTGGTTGGTGTTGTAGT 477
Query 478 GACAATGATGGAAACGGGTTTTTCGGCGATAAACATTTAAACCCTCAAGTTTGGATCAAA 537
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GACAATGATGGAAATGGGTTTTTCGGCGATAAACATTTAAACCCTCAAGTTTGGATCAAA 537
Query 538 GGGTTaaaaaaaaTGGCATCAATGTTTGCTAATGTTTCATCAAATGTGGTTGGTATGAGT 597
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 538 GGGTTAAAGAAAATGGCATCAATGTTTGCTAATGTTTCATCAAATGTGGTTGGTATGTGT 597
Query 598 TTAAGGAATGAGCTTAGAGGCCCTAAACAGAACATTAAAGATTGGTACAAGTATATGAGA 657
|||||||||| |||||||| |||||||||||||||||||||||||| | ||||||||||
Sbjct 598 CTAAGGAATGAACTTAGAGGTCCTAAACAGAACATTAAAGATTGGTATACGTATATGAGA 657
Query 658 GAA-GGCGCTGAAGCGGTCCACTCAGTGAATCCGAATGTTCTTGTTATTGTCTCGGGTTT 716
|| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 658 -AAGGGCGCTGAAGCGGTCCACTCAATGAATCCGGATGTTCTTGTTATTGTCTCGGGTTT 716
Query 717 AAATTACGCTACTGACTTATCGTTTCTCCGAGAGAGACCCTTTGAAGTTAGCTTCAGGAG 776
|||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 717 AAATTATGCTACTGACTTATCGTTTCTCCGAGACAGACCTTTTGAAGTTAGCTTTAGGAG 776
Query 777 GAAAGTGGTGTTTGAGATACATTGGTATGGATTTTGGAATACTTGGGAAGGAGATAACTT 836
|||| ||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||
Sbjct 777 GAAACTGGTGTTTGAGATACATTGGTATGGGTTTTGGAATTCTTTGGAAGGAGATAACTT 836
Query 837 GAACAAGATTTGCGGGAAAGAAACCGAGAAGATGATGAAAATGTCGGGGTTTTTGCTCGA 896
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 837 GAACAAGATTTGCGGGAAAGAAACCGAAAAGATGATGAAAATGTCGGGGTTTTTGCTCGA 896
Query 897 GAAAGGGATACCGTTGTTTGTGAGCGAGTTTGGGATTGATCAAAGAGGAAACAATGCAAA 956
||||||| | |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 897 GAAAGGGGTTCCGTTGTTTGTGAGCGAGTTTGGGATTGATCAAAGAGGGAATAATGCAAA 956
Query 957 CGACAATAAGTTTCTAAGTTGTTTTATGGCTTTAGCAGCTGATCGTGATCTAGATTGGTC 1016
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 957 TGACAATAAGTTTCTAAGTTGTTTTATGGCTTTAGCAGCTGATCTTGATCTAGATTGGTC 1016
Query 1017 ACTATGGACTCTTGCAGGAAGCTATTATATAAGAGAGAAAAGTATTGGATCAGATGAATC 1076
||||||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||| |
Sbjct 1017 ACTATGGACTCTTGCAGGAAGTTATTATATAAGGGAGAAAACTATTGGAACAGATGAAAC 1076
Query 1077 TTATGGAGTTTTGGATTTTAATTGGTCTAGCATAAGGAACTCAACCATTTTGCAGATGAT 1136
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1077 TTATGGAGTTTTGGATTGGAATTGGTCAAGCATAAGGAACTCAACCATTTTGCAGATGAT 1136
Query 1137 ATCTGCAATTCAGACTCCTTTT-ATAGGGCTAATGGAAACTCAACCAAAGAAAATAATGT 1195
|||||||| ||| |||||||| | ||| || |||||||| |||||||||||||||||||
Sbjct 1137 TTCTGCAATACAGTCTCCTTTTCA-AGGTCTGATGGAAACACAACCAAAGAAAATAATGT 1195
Query 1196 TCCATCCTTCAACTGGACTTTGCATTGTAAGAAAATCATTGTTTCAACTAAAGCTTGGTT 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TCCATCCTTCAACTGGACTTTGCATTGTAAGAAAATCATTGTTTCAACTAAAGCTTGGTT 1255
Query 1256 CTTGCAATAGATCAGAAAGCTGGAGACTTTCTTCTCATCGAGTTTTATCACTAGCAGAAG 1315
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1256 CTTGCAATAGATCAGAAAGCTGGAAACTTTCTTCTCATCGAGTTTTATCACTAACAGAAG 1315
Query 1316 AACAAATCCTCTGTTTAAAAGCTTATGAGAAAGGAAAGTCTGTTAAGCTACGTCTGTTTT 1375
|| |||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 1316 AAAAAATCCTCTGTTTAAAAGCTTATGAGGACGGAAAGTCTGTGAAGCTACGTCTGTTTT 1375
Query 1376 TCTCTGAATCTTACTGTTCGAAATGGAAACTTTTTTCTGACTCGAAGATGCAACTCTCTT 1435
|||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1376 TCTCAGATTCTTACTGTTCGAAATGGAAGCTTTTGTCTGACTCGAAGATGCAACTCTCTT 1435
Query 1436 CTATAACAAAGAATGGATTCTCTGTTTGTTTGGATGTGGATACGGAGAATAACAACATTG 1495
| ||||||||||||||| | ||| ||||||||||||||||| || | |||||||||||||
Sbjct 1436 CGATAACAAAGAATGGAGTATCTATTTGTTTGGATGTGGATTCGAACAATAACAACATTG 1495
Query 1496 TGACGAATAGCTGCAAATGTTTACGAGGAAACTCGAGTTGCGATCCGAGAAGCCAGTGGT 1555
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1496 TGACGAACAGCTGCAAATGTTTACTAGGAAACTCGAGTTGCGATCCGAGAAGCCAGTGGT 1555
Query 1556 TTAAGCTTGTTACTAGCACGAGAAGACGGTCTAGACCAAAACCTTTTCTTCAAATTAGTC 1615
||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||
Sbjct 1556 TTAAGCTTGTTACTAGCACGAGAAGGCGGTCGAAACCAAAACCTTTTCTTCAAATTAGTC 1615
Query 1616 TATACTCCAAGACA 1629
|||||||||||||
Sbjct 1616 CATACTCCAAGACA 1629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62087099350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5