BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26140.1
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322756 jgi|Araly1|322756|fgenesh1_pm.C_scaffold_5000300 2390 0.0
> Ahg322756 jgi|Araly1|322756|fgenesh1_pm.C_scaffold_5000300
Length=1530
Score = 2390 bits (1294), Expect = 0.0
Identities = 1453/1531 (95%), Gaps = 5/1531 (0%)
Strand=Plus/Plus
Query 1 ATGGCATATCCTCTCTCTACAAACTCTCGTTGGATCATCGACGAAAAAGGGCAAAGAGTG 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCATATCCTCTCTCTACAAACTCTCGTTGGATCATCGACGAAAAAGGACAAAGAGTG 60
Query 61 AAGCTGGCGTGTGTGAATTGGCCATCACATTTGCAGCCTGTGGTGGCGGAAGGGCTGAGC 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 AAGCTGGCGTGTGTGAATTGGCCATCGCATTTGCAGCCTGTGGTGGCGGAAGGGCTGAGC 120
Query 121 AAGCAGAGTGTAGATGACTTGGCCAAGAAGATAATGGCAATGGGTTTCAACTGTGTTAGG 180
|||||| | |||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 121 AAGCAGGGAGTAGATGACTTGGCCAAGAAGATAGTGGCAATGGGTTTCAACTGTGTAAGG 180
Query 181 TTTACTTGGCCACTTGATCTAGCTACAAATGAGACGTTGGCTAATAATGTTACTGTGAGA 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTAACTTGGCCACTTGATCTAGCTACAAATGAGACGTTGGCTAATAATGTTACTGTGAGA 240
Query 241 CAATCTTTTCAAAGTCTTGGTCTTAATGATGACATTTCTGGTTTCGAAACAAAGAACCCA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAATCTTTTCAAAGTCTTGGTCTTAATGATGACATTTCTGGTTTCGAAACAAAGAACCCA 300
Query 301 TCCATGATTGATCTTCCCCTCATTGAAGCTTACAAGAAGGTGGTAGCTAAGTTGGGAAAC 360
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 TCCATGATTGATCTTCCGCTCATTGAAGCTTACAAGAAGGTAGTAGCTAAGTTGGGAAAC 360
Query 361 AATAATGTGATGGTGATATTAGACAACCACGTGACCAAGCCAGGGTGGTGTTGTGGCTAC 420
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 361 AAAAATGTGATGGTGATATTAGACAACCACGTGACCAAGCCAGGATGGTGCTGTGGCTAC 420
Query 421 AACGACGGCAACGGTTTCTTTGGTGACACTTTCTTTGACCCTACTACGTGGATCGCCGGT 480
|||||||| |||||||||||||| |||||||||||||||||| | ||||||||| |||||
Sbjct 421 AACGACGGAAACGGTTTCTTTGGCGACACTTTCTTTGACCCTGCCACGTGGATCTCCGGT 480
Query 481 CTGACCAAGATAGCCATGACTTTCAAAGGTGCCACTAATGTCGTTGGCATGAGCCTCAGA 540
|||| ||||||||||| |||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 481 CTGATCAAGATAGCCACGACTTTTAAAGGTGCCTCCAATGTCGTTGGCATGAGCCTCAGA 540
Query 541 AACGAACTTAGAGGACCAAAACAAAACGTCGATGATTGGTTCAAGTACATGCAACAAGGG 600
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 AATGAACTTAGAGGACCAAAACAAAACGTCGACGATTGGTTCAAGTACATGCAACAAGGG 600
Query 601 GCCGAAGCAGTTCACGAAGCAAACCCTAATGTACTTGTAATCCTTTCTGGCCTCAGCTAC 660
||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 GCCGAGGCACTTCACGAAGCAAACCCTAATGTACTTGTAATCCTGTCTGGCCTCAGCTAC 660
Query 661 GACACCGACCTCTCATTTGTCCGATCACGACAC-GTAAACCTAACTTTCACTAGAAAACT 719
|| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 661 GATACCGACCTCTCATTTGTCCGATCACGAC-CTGTAAACCTAACTTTCACTAGAAAACT 719
Query 720 CGTGTTTGAGCTCCATCGGTACTCTTTCACCAACACAAACACATGGAGTTCCAAAAACCC 779
|||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 CGTGTTCGAGCTCCATCGATACTCTTTCACCAACACAAAAACATGGAGTTCCAAAAACCC 779
Query 780 TAACGAGGCATGCGGTGAGATTCTGAAAAGCATCGAGAACGGGGGCGGTTTCAATCTCCG 839
||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct 780 TAACGAGGCATGCGGCGAGATTCTGCAAAGCATAGAGAACGGGGGCGGTTTCAACCTCCG 839
Query 840 TGACTTCCCGGTGTTTCTTAGCGAGTTTGGAATCGACTTGAGAGGCAAAAATGTTAACGA 899
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 840 TGACTTCCCGGTGTTTCTTAGTGAGTTTGGAATTGACTTGAGAGGCAAAAATGTTAACGA 899
Query 900 TAATCGCTACATTGGATGTATATTAGGTTGGGCCGCGGAAAATGACGTAGATTGGTCGAT 959
|||||| || || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 900 TAATCGGTATATCGGATGTATATTAGGTTGGGCAGCGGAAAATGACGTAGATTGGTCGAT 959
Query 960 TTGGACTCTTCAAGGAAGTTACTATCTCAGAGAAGGTGTGGTCGGAATGAGTGAGTTTTA 1019
|||| | |||||||||||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct 960 TTGGGCACTTCAAGGAAGTTATTATCTCAGAGAAGGTGTGGTCGGAATGAGCGAGTATTA 1019
Query 1020 CGGTATCTTGGATTCGGATTGGGTTCGTGTTCGAAGCCAAAGTTTCTTGCAAAGATTGTC 1079
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1020 CGGTATCTTAGATTCGGATTGGGTTCGTGTTCGAAGCCAAAATTTCTTGCAAAGATTGTC 1079
Query 1080 TCTGATTCTATCCCCGCTTCAAGGACCAGGCTCTCAATCCAAAGTCTACAATCTTGTTTT 1139
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1080 TCTGATTCAATCCCCGCTTCAAGGACCGGGCTCTCAATCCAAAGTCTACAATCTTGTTTT 1139
Query 1140 CCACCCGTTAACCGGACTTTGCATGCTACAAAGTATCTTAGATCCAACCAAGGTCACTCT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CCACCCGTTAACCGGACTTTGCATGCTACAAAGTATCTTAGATCCAACCAAGGTCACTCT 1199
Query 1200 CGGTCTATGTAATGAATCTCAACCATGGAGCTACACTCCTCAGAACACCCTG---ACACT 1256
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1200 CGGTCTATGTAATGAATCTCAACCATGGAGCTACACTCCTGAGAACACCCTGCTGACACT 1259
Query 1257 CAAAGACAAGTCCCTATGCTTAGAGAGCACCGGGCCGAATGCGCCGGTTAAGCTCAGTGA 1316
|||||||||||| ||||||||||| | ||| ||||| || ||||||||||||||||||||
Sbjct 1260 CAAAGACAAGTCTCTATGCTTAGAAACCACTGGGCCCAACGCGCCGGTTAAGCTCAGTGA 1319
Query 1317 AACGAGTTGCTCGAGCCCTAATTTGTCAGAATGGGAGACCATCTCAGCCTCTAATATGCT 1376
| |||||||||| ||||||||||||||| |||||||||| || |||||||||||||||||
Sbjct 1320 AGCGAGTTGCTCAAGCCCTAATTTGTCAAAATGGGAGACTATTTCAGCCTCTAATATGCT 1379
Query 1377 CTTAGCTGCTAAATCAACCAATAACTCACTTTGCCTTGACGTGGATGAAACAAATAACCT 1436
|||||| || |||||||| |||||||| ||||| ||||||||||||||| | ||||||||
Sbjct 1380 CTTAGCAGCGAAATCAACTAATAACTCGCTTTGTCTTGACGTGGATGAATCCAATAACCT 1439
Query 1437 CATGGCTAGTAACTGCAAGTGTGTGAAGGGCGAAGACAGCTCGTGTGATCCGATAAGCCA 1496
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1440 CATCGCTAGTAACTGCAAGTGTGTGAAGGGCGAAGACAGCTCGTGTGATCCGATAAGTCA 1499
Query 1497 GTGGTTCAAGATTGTTAAAGTTAGTAAATAA 1527
|||||| ||||||||||||||| ||||||||
Sbjct 1500 GTGGTTTAAGATTGTTAAAGTTCGTAAATAA 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59458872445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5