BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26160.1
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896477 jgi|Araly1|896477|Al_scaffold_0005_443 2146 0.0
Ahg322757 jgi|Araly1|322757|fgenesh1_pm.C_scaffold_5000301 1973 0.0
Ahg484384 jgi|Araly1|484384|fgenesh2_kg.5__376__AT3G26170.1 1592 0.0
Ahg896478 jgi|Araly1|896478|Al_scaffold_0005_444 1072 0.0
> Ahg896477 jgi|Araly1|896477|Al_scaffold_0005_443
Length=1509
Score = 2146 bits (1162), Expect = 0.0
Identities = 1393/1505 (93%), Gaps = 14/1505 (1%)
Strand=Plus/Plus
Query 22 ATCTCTTTGCTCTGTCTTTTTCTCATCACCTTCGTTTCGTTAACCATTGTT-GGC-TGCA 79
||||||||||||||| ||||||||||||| || |||||||||| || || ||| | |
Sbjct 7 ATCTCTTTGCTCTGTGTTTTTCTCATCACTTTAGTTTCGTTAA-TTTTTTTCGGCAAG-A 64
Query 80 AGATCAAACGCT-CTATATGGAATCTTCCCCCAAGCCCTCCTAAGTTACCGGTCATCGGA 138
||| |||||||| | | |||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 65 AGACCAAACGCTGC-AAATGGAATCTTCCACCAAGCCCTCCTAAGTTTCCGGTCATAGGA 123
Query 139 AACTTACACCAAGTTGGAGAATTGCCTCACAGGTCATTTCGACGTCTAGCCGAAAGAACC 198
|||||||| ||| ||||||||||||||||||| ||| ||| |||||| |||| |||||||
Sbjct 124 AACTTACATCAACTTGGAGAATTGCCTCACAGATCACTTCAACGTCTCGCCGCAAGAACC 183
Query 199 GGACATGTTATGCTTCTTCACTTAGGGTTTGTCCCTGTAACTGTTATCTCATCGAGAGAA 258
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 184 GGACATGTGATGCTTCTTCACTTAGGGTTTGTCCCTGTAACTGTGATCTCATCGAAAGAA 243
Query 259 GCAGCTGAAGAAGTTCTTAGAACTCATGACCTAGACTGTTGCAGCAGGCCTAACCTTGTG 318
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 244 GCAGCTGAAGAAGTGCTTAGAACTCATGACCTAGACTGTTGCAGCAGGCCTAACCTTCTC 303
Query 319 GGGTCTAGGCTAATCTCTCGGGGTTTTAAAGATCTCAATTTTACTCCATATGGTGAAGAG 378
||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| |||||
Sbjct 304 GGGTCGAGGCTAATCTCTCGGGGTTTTAAAGATATCAATTTTACTCCATACGGTAAAGAG 363
Query 379 TGGAAGGAGCGACGTAGGTTCTTGGTTG-GTGAGCTTTTCTGTTCTAAAAAGCTTCAGTC 437
|||||||||||||||| |||||||| || | ||||||||||||||||||||| || ||||
Sbjct 364 TGGAAGGAGCGACGTAAGTTCTTGG-TGCGCGAGCTTTTCTGTTCTAAAAAGGTTGAGTC 422
Query 438 TTTTATATATATCAAAGAAGTAGAATGTAACTTTCTGGTCAAGAAACTGTCGGAATCAGC 497
|||| |||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||
Sbjct 423 TTTTGGATATATCAAAGAAGAAGAATGTAACTTTCTGGTCAAGAAATTGTCAGAATCGGC 482
Query 498 AGTGGATCAATCTCCAGTCGATTTGAGCAAAACCCTTTTCTG-GCTAGCTGCGAGTATCC 556
||||||||| ||||| |||||||||||||||||||||||| | |||||||||||| ||||
Sbjct 483 AGTGGATCAGTCTCCGGTCGATTTGAGCAAAACCCTTTTC-GAGCTAGCTGCGAGGATCC 541
Query 557 TGTTTAGAGTTGCTTTTGGACAGAGTTTCCACGAGAGTGAGTTTACCGATACAGACAAGA 616
||||||||||| |||||||||||||||||||||||| |||||||| | ||| ||||||||
Sbjct 542 TGTTTAGAGTTTCTTTTGGACAGAGTTTCCACGAGATTGAGTTTATCAATAAAGACAAGA 601
Query 617 TCGATGAACTTGTATTTGAAACCGAGACAGCTCAAGG-TAGTTTCACTTGCTCTGATTTC 675
||||||||||||||||||||| |||||||||| ||| ||||||||||| ||||||||||
Sbjct 602 TCGATGAACTTGTATTTGAAATAGAGACAGCTC-AGGCTAGTTTCACTTACTCTGATTTC 660
Query 676 TTCCCTATCGCCGGACTTGGATGGCTTGTTGACTGGATTTCCGGACAACACAAGAGGCTC 735
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 TTCCCTATCGCCGGACTTGGATGGCTTGTTGACTGGATTTCCGGGCAACACAAGAGGCTC 720
Query 736 AACGATGTTTTCCTCAAGCTCGATGCTCTG-TTACAGCATGTGATTGATGATCATTCAAA 794
|| |||| |||||| ||||||||||||||| || ||||||||||| |||||||||||| |
Sbjct 721 AATGATGCTTTCCTAAAGCTCGATGCTCTGCTT-CAGCATGTGATCGATGATCATTCAGA 779
Query 795 CCCTGGAAGATCGAAAGATCACAAAGATATTGTCGATGTGATGTTGGATGTGATGCATAA 854
||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||
Sbjct 780 TCCTGGAAGATCGAAAGATCACAAAGATATCGTCGATGTAATGTTGGATATGATGCATAA 839
Query 855 ACAAGGCAAAGATGATTCTTTGAGGCTCACAATAGATCATATTAAGGGGCTTCTCACGAA 914
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 840 ACAAGGCAAAGATGATTCTTTGAGGCTCACAATAGATCATATTAAGGCGCTTCTCACGAA 899
Query 915 TATAATAATCGCAGGGATAGACACAGGAGCTCTGACCATGATATGGACAATGACAGAGCT 974
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 900 TATAATAATCGCAGGGATAGACACAGGAGCTCTTACCATGATATGGACAATGACGGAGCT 959
Query 975 CGCTAGAAACCCCGAAATAATGAAGAAAGTTCAAGGCGAGATCCGAGATCGCCTTGGCAA 1034
||||||||| || ||| ||||||||||||||||| |||| |||||||| | | |||||||
Sbjct 960 CGCTAGAAATCCGGAAGTAATGAAGAAAGTTCAATGCGAAATCCGAGACCACTTTGGCAA 1019
Query 1035 CAATAGGGAGAGAATTACCAAAGAAGATCTTGATAAAGTTCCTTTCTTGAACTTGGTGAT 1094
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CAATAAGGAGAGAATCACCAAAGAAGATCTTGATAAAGTTCCTTTCTTGAACTTGGTGAT 1079
Query 1095 CAAGGAAACATTCAGATTACACCCAGTAGCTCCTCTTTTGCTCCCACGGGAAACAATGGC 1154
||||||| ||||||||||| ||||||||||||||||| |||| ||| |||||||||||||
Sbjct 1080 CAAGGAATCATTCAGATTATACCCAGTAGCTCCTCTTCTGCTACCAAGGGAAACAATGGC 1139
Query 1155 TCACGTCAAGGTTCAAGGCTATGATATTCCTCCCAAGAGACGGATCTTGGTCAACGCTTG 1214
||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct 1140 TCACGTCAAGGTTCAAGGCTATGATATTCCTCCCAAGAGGCGGATCTTGGTCAATGTTTG 1199
Query 1215 GGCGATAGGAAGAGATCCTAAACTATGGACTGACCCGGAAGAGTTTAAGCCCGAGAGGTT 1274
|||||||||||||||||| ||||| |||| |||||||||||||||| |||||||||||
Sbjct 1200 GGCGATAGGAAGAGATCCGAAACTCTGGAAAAACCCGGAAGAGTTTAACCCCGAGAGGTT 1259
Query 1275 TATCGATAGCCCTGTGGACTATAGAGGACAACATTTTGAGCTCTTACCGTTCGGGTCTGG 1334
|||||||||||| ||||| | |||||| |||||||| ||||| |||||||| ||||||||
Sbjct 1260 TATCGATAGCCCCGTGGATTTTAGAGGGCAACATTTCGAGCTTTTACCGTTTGGGTCTGG 1319
Query 1335 ACGAAGGATATGTCCCGGGATGGCGATGGGGATGGCTACTCTGGAATTGGGACTCTTGAA 1394
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1320 ACGAAGGATATGTCCCGGGATGGAGATGGGGATGGCTACTCTGGAATTGGGACTCTTGAA 1379
Query 1395 CTTACTTTACTTCTTCGATTGGAAGTTGCCTGATGGGATGTCACATAAAGATATCGATAC 1454
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1380 CTTACTTTACTTCTTCGATTGGAAGTTGCCTGATGGGATGACACATAAAGATATCGATAC 1439
Query 1455 TGAAGAAGCTGGTACTCTTACAGTCGTTAAGAAAGTACATCTAAAGCTTGTTCCAGTTCG 1514
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1440 TGAAGAAGCTGGTACTCTTACAGTCGTTAAGAAAATACCTCTAAAGCTTGTTCCAGTTCG 1499
Query 1515 AGTTC 1519
|||||
Sbjct 1500 AGTTC 1504
> Ahg322757 jgi|Araly1|322757|fgenesh1_pm.C_scaffold_5000301
Length=1509
Score = 1973 bits (1068), Expect = 0.0
Identities = 1372/1519 (90%), Gaps = 20/1519 (1%)
Strand=Plus/Plus
Query 16 ATGGCAATCTCTTTGCTCTGTCTTTTTCTCATCACCTTCGTTTCGTTAACCATTGT-TGG 74
|||||||||||||| |||||||||||||||||||||||||||||||||| | |||| |
Sbjct 1 ATGGCAATCTCTTTACTCTGTCTTTTTCTCATCACCTTCGTTTCGTTAATCTTTGTCT-T 59
Query 75 C-TGCAAGATCAAACGCTCTATATGGAATCTTCCCCCAAGCCCTCCTAAGTTACCGGTCA 133
| | ||||||||||||| || |||||||||||| ||||| ||||||| ||| |||||||
Sbjct 60 CAAG-AAGATCAAACGCTTTAAATGGAATCTTCCTCCAAGTCCTCCTACGTTTCCGGTCA 118
Query 134 TCGGAAACTTACACCAAGTTGGAGAATTGCCTCACAGGTCATTTCGACGTCTAGCCGAAA 193
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 119 TCGGAAACTTACACCAAGTTGGAGAATTGCCTCATAGGTCATTTCAACGTCTAGCCGAAA 178
Query 194 GAACCGGACATGTTATGCTTCTTCACTTAGGGTTTGTCCCTGTAACTGTTATCTCATCGA 253
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 179 GAACCGGACATGTTATGCTTCTTCACTTTGGGTTTGTCCCTGTAACTGTTATCTCATCGA 238
Query 254 GAGAAGCAGCTGAAGAAGTTCTTAGAACTCATGACCTAGACTGTTGCAGCAGGCCTAACC 313
| ||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| |
Sbjct 239 GGGAAGCAGCTGAAGAAGTGCTTAGAACTCATGACCTAAAGTGTTGCAGCAGGCCTAAGC 298
Query 314 TTGTGGGGTCTAGGCTAATCTCTCGGGGTTTTAAAGATCTCAATTTTACTCCATATGGTG 373
|||| ||| | ||||||||||||||||||||||||||| ||| |||||||||||| ||||
Sbjct 299 TTGTCGGGACGAGGCTAATCTCTCGGGGTTTTAAAGATATCAGTTTTACTCCATACGGTG 358
Query 374 AAGAGTGGAAGGAGCGACGTAGGTTCTTGGTTG-GTGAGCTTTTCTGTTCTAAAAAGCTT 432
||||||||| |||||| |||| |||||||| || | ||||||||||||| ||||||| ||
Sbjct 359 AAGAGTGGAGGGAGCGGCGTAAGTTCTTGG-TGCGAGAGCTTTTCTGTTTTAAAAAGGTT 417
Query 433 CAGTCTTTTATATA-TATCAAAGAAGTAGAATGTAACTTTCTGGTCAAGAAACTGTCGGA 491
||||||||| | | | ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 418 CAGTCTTTTCGAGAGT-TCATAGAAGAAGAATGTAACTTTCTGGTCAAGAAACTGTCGGA 476
Query 492 ATCAGCAGT-GGATCAATCTCCAGTCGATTTGAGCAAAACCCTTTTCTGGCTAGCTGCGA 550
||||||||| || || |||| || ||||||||||||||||||||||||||||||||||
Sbjct 477 ATCAGCAGTAGG-TCGGGCTCCGGTTGATTTGAGCAAAACCCTTTTCTGGCTAGCTGCGA 535
Query 551 GTATCCTGTTTAGAGTTGCTTTTGGACAGAGTTTCCACGAGAGTGAGTTTACCGATACAG 610
|||||||||||||| ||||||||||||||||||||||||| | ||||||| ||||| ||
Sbjct 536 GTATCCTGTTTAGAATTGCTTTTGGACAGAGTTTCCACGACAACGAGTTTAACGATAAAG 595
Query 611 ACAAGATCGATGAACTTGTATTTGAAACCGAGACAGCTCAAGG-TAGTTTCACTTGCTCT 669
||||||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||
Sbjct 596 ACAAGATCGATGAACTTATATTTGAAACCGAGACAGCTCA-GGCTAGTTTCACTTACTCT 654
Query 670 GATTTCTTCCCTATCGCCGGACTTGGATGGCTTGTTGACTGGATTTCCGG-ACAACACAA 728
|||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 655 GATTTCTTCCCTATGGCCGGACTTGGATGGCTTGTTGACTGGATTTCCGGGA-AACACAA 713
Query 729 GAGGCTCAACGATGTTTTCCTCAAGCTCGATGCTCTGTTACAGCATGTGATTGATGATCA 788
| |||||||| |||| ||| |||||||||||||| |||| || | |||||| ||||||||
Sbjct 714 GTGGCTCAACAATGTCTTCTTCAAGCTCGATGCTTTGTTTCAACTTGTGATCGATGATCA 773
Query 789 TTCAAACCCTGGAAGATCGAAAGATCACAAAGATATTGTCGATGTGATGTTGGATGTGAT 848
|||||| ||| ||||||||||||| ||||||||||| |||||||| |||||||||||| |
Sbjct 774 TTCAAATCCTAGAAGATCGAAAGACCACAAAGATATCGTCGATGTAATGTTGGATGTGGT 833
Query 849 GCATAAACAAGGCAAAGATGATTCTTTGAGGCTCACAATAGATCATATTAAGGGGCTTCT 908
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 834 GCATAAACAAGGCAAAGATGATTCTTTGAGGCTCACAACAGATCATATTAAGGGACTTCT 893
Query 909 CACGAATATAATAATCGCAGGGATAGACACAGGAGCTCTGACCATGATATGGACAATGAC 968
|||||||||||| |||||||||||||||||||||||||| || ||||||||| |||||||
Sbjct 894 CACGAATATAATTATCGCAGGGATAGACACAGGAGCTCTTACTATGATATGGGCAATGAC 953
Query 969 AGAGCTCGCTAGAAACCCCGAAATAATGAAGAAAGTTCAAGGCGAGATCCGAGATCGCCT 1028
|||||||| |||||||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 954 GGAGCTCGCAAGAAACCCGGAACTAATGAAGAAAGTTCAAGGCGAGATCCGAGACCGCCT 1013
Query 1029 TGGCAACAATAGGGAGAGAATTACCAAAGAAGATCTTGATAAAGTTCCTTTCTTGAACTT 1088
||||||| ||| |||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 1014 TGGCAACGATAAAGAGAGAATCACAAAAGAAGATCTCAATAAAGTTCCTTTCTTGAACTT 1073
Query 1089 GGTGATCAAGGAAACATTCAGATTACACCCAGTAGCTCCTCTTTTGCTCCCACGGGAAAC 1148
||||||||||||||||||||||||||| ||||||||||||||| | |||||| | |||||
Sbjct 1074 GGTGATCAAGGAAACATTCAGATTACATCCAGTAGCTCCTCTTCTACTCCCAAGAGAAAC 1133
Query 1149 AATGGCTCACGTCAAGGTTCAAGGCTATGATATTCCTCCCAAGAGACGGATCTTGGTCAA 1208
|||||||||| |||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 1134 AATGGCTCACATCAAGGTTCAAGGCTATGATATTCCTCCAAAGAGACGGATCTTAGTAAA 1193
Query 1209 CGCTTGGGCGATAGGAAGAGATCCTAAACTATGGACTGACCCGGAAGAGTTTAAGCCCGA 1268
| ||||||| |||||||||||||| ||||| |||| |||||||||||||||| |||||
Sbjct 1194 CACTTGGGCAATAGGAAGAGATCCGAAACTCTGGAAAAACCCGGAAGAGTTTAACCCCGA 1253
Query 1269 GAGGTTTATCGATAGCCCTGTGGACTATAGAGGACAACATTTTGAGCTCTTACCGTTCGG 1328
|||||||||| | | ||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1254 GAGGTTTATCAACAACCCTGTGGATTATAGAGGACAACATTTCGAGCTCTTACCGTTCGG 1313
Query 1329 GTCTGGACGAAGGATATGTCCCGGGATGGCGATGGGGATGGCTACTC-TGGAATTGGGAC 1387
||| || |||||||||||||||||||||| | ||||||| ||| | ||||||||||||
Sbjct 1314 GTCCGGTCGAAGGATATGTCCCGGGATGGGGTTGGGGATCACTA-TAGTGGAATTGGGAC 1372
Query 1388 TCTTGAACTTACTTTACTTCTTCGATTGGA-AGTTGCCTGATGGGATGTCACATAAAGAT 1446
|||||||||||||||||||||||||||||| || || ||||||||| ||||||||||
Sbjct 1373 TCTTGAACTTACTTTACTTCTTCGATTGGAGAGCA-CCAGATGGGATGACACATAAAGAC 1431
Query 1447 ATCGATACTGAAGAAGCTGGTACTCTTACAGTCGTTAAGAAAGTACATCTAAAGCTTGTT 1506
|||||||| ||||| || ||||||||||||||| |||||||||| ||| ||||||||
Sbjct 1432 ATCGATACAGAAGATTTTGCTACTCTTACAGTCGTCAAGAAAGTACCTCTCAAGCTTGTC 1491
Query 1507 CCAGTTCGAGTTCCA-TGA 1524
||||||| ||| ||| |||
Sbjct 1492 CCAGTTCAAGT-CCAGTGA 1509
> Ahg484384 jgi|Araly1|484384|fgenesh2_kg.5__376__AT3G26170.1
Length=1644
Score = 1592 bits (862), Expect = 0.0
Identities = 1314/1531 (86%), Gaps = 36/1531 (2%)
Strand=Plus/Plus
Query 7 aaaaaaaaaaTGGCAATCTCTTTGCTCTGTCTTTT-TCTCATCACCTTCGTTTCGTTAAC 65
|||||||||||||| || ||||| |||||| |||| ||| | ||| |||||||||| |
Sbjct 1 AAAAAAAAAATGGCGATATCTTTCCTCTGT-TTTTGCCTCGTTACCCTCGTTTCGTTCAT 59
Query 66 CATTGTT-GGC-TGCAAGATCAAACGCTCTATATGGAATCTTCCCCCAAGCCCTCCTAAG 123
| || || | | | ||||||||||| |||| |||||||||||| ||||||||||| |||
Sbjct 60 C-TTTTTCGCCAAG-AAGATCAAACGATCTAAATGGAATCTTCCTCCAAGCCCTCCCAAG 117
Query 124 TTACCGGTCATCGGAAACTTACACCAAG-TTGGAGAATTGCCTCACAGGTCATTTCGACG 182
|| |||||||||||||||||||||| || ||||||||||||||||| ||||| ||| |||
Sbjct 118 TTTCCGGTCATCGGAAACTTACACC-AGATTGGAGAATTGCCTCACTGGTCACTTCAACG 176
Query 183 TCTAGCCGAAAGA-ACCGGACATGTTATGCTTCTTCACTTAGGGTTTGTCCCTGTAACTG 241
||||||||||||| | ||||| ||| |||||||||||||| |||||||||||| ||||||
Sbjct 177 TCTAGCCGAAAGATA-CGGACCTGTGATGCTTCTTCACTTTGGGTTTGTCCCTATAACTG 235
Query 242 TTATCTCATCGAGAGAAGCAGCTGAAGAAGTTCTTAGAACTCATGACCTAGACTGTTGCA 301
| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 236 TGGTCTCATCGAGAGAAGCAGCTGAAGAAGTGCTCAGAACTCATGACCTAGACTGTTGCA 295
Query 302 GCAGGCCTAACCTTGTGGGGTCTAGGCTAATCTCTCGGGGTTTTAAAGATCTCAATTTTA 361
|||||||||| ||||| ||| | ||| || | || |||| |||||||||| | |||||
Sbjct 296 GCAGGCCTAAGCTTGTCGGGACGAGGTTACTTTCGCGGGATTTTAAAGATATTGGTTTTA 355
Query 362 CTCCATATGGTGAAGAGTGGAAGGAGCGACGTAGGTTCTTG-GTTG-GTGAGCTTTTCTG 419
| ||||| ||| |||||||||||||||| |||| | | ||| | || |||||||||||||
Sbjct 356 CGCCATACGGTAAAGAGTGGAAGGAGCGGCGTAAG-T-TTGCGCTGCGTGAGCTTTTCTG 413
Query 420 -TTCTAAAAAGCTTCAGTCTTTTATATATATCAAAGAAGTAGAATGTAACTTTCTGGTCA 478
|| || ||| ||| |||||||| |||| | ||| | ||||||||||||||||||||
Sbjct 414 CTT-GAATAAGGTTCGGTCTTTTAGGCATATTAGAGAGGAAGAATGTAACTTTCTGGTCA 472
Query 479 AGAAACTGTCGGAATCAGCAGTGGATCAATCTCCAGTCGATTTGAGCAAAACCCTTTTCT 538
|||||||||||||||| || ||||||| ||||| ||||||||||||||| | |||||||
Sbjct 473 AGAAACTGTCGGAATCCGCGGTGGATCGCTCTCCGGTCGATTTGAGCAAATCACTTTTCT 532
Query 539 GGCTAGCTGCGAGTATCCTGTTTAGAGTTGCTTTTGGACAGAGTTTCCACGAGAGTGAGT 598
||||| | || |||||||| ||||||||||| || ||||||| |||||||||||| | |
Sbjct 533 GGCTAACCGCAAGTATCCTTTTTAGAGTTGCCTTAGGACAGAATTTCCACGAGAGCAATT 592
Query 599 TTACCGATACAGACAAG-ATCGATGAACTTGTATTTGAAACCGAGACAGCTCAAGGTAGT 657
||| ||||| |||| || ||||| || || || || ||| | ||||| || | || ||||
Sbjct 593 TTATCGATAAAGAC-AGTATCGAAGAGCTCGTGTTCGAAGCTGAGACTGCCCTAGCTAGT 651
Query 658 TTCACTTGCTCTGATTTCTTCCCTATCGCCGGACTTGGATGGCTTGTTGACTGGATTTCC 717
|||||||||||||||||||||||| | ||||||||||||||||| ||||||||| | |||
Sbjct 652 TTCACTTGCTCTGATTTCTTCCCTGTTGCCGGACTTGGATGGCTCGTTGACTGGCTCTCC 711
Query 718 GGACAACACAAGAGGCTCAACGATGTTT-TCCTCAAGCTCGATGCTCTGTTACAGCATGT 776
||||||||||| |||||||||||||||| | ||||||| ||||||||||| || |||||
Sbjct 712 GGACAACACAAAAGGCTCAACGATGTTTAT-TTCAAGCTTGATGCTCTGTTTCAACATGT 770
Query 777 GATTGATGATCA-TTCAAACCCTGGAAGATCGAAAGATCACAAAGATATTGTCGATGT-G 834
||| |||||||| || ||| ||||||||||| ||||||||| |||| || | ||| |
Sbjct 771 GATCGATGATCATTTGAAA-CCTGGAAGATCCAAAGATCACGAAGACATCATTGAT-TCA 828
Query 835 ATGTTGGATGTGATGCATAAACAAGGCAAAGATGA-TT-CTTTGAGGCTCACAATAGATC 892
|||||||||||||| |||||| |||| |||||| | || ||| || ||||||||||||||
Sbjct 829 ATGTTGGATGTGATTCATAAAGAAGGAAAAGAT-AGTTCCTTAGA-GCTCACAATAGATC 886
Query 893 ATATTAAGGGGCTTCTCACGAATATAATAATCGCAGGGATAGACACAGGAGCTC-TGACC 951
|||| |||||| ||||| |||||||| | | ||||||||||||||||| || | | |||
Sbjct 887 ATATCAAGGGGTTTCTCGCGAATATATTTCTTGCAGGGATAGACACAGGGGC-CATCACC 945
Query 952 ATGATATGGACAATGACAGAGCTCGCTAGAAACCCCGAAA-TAATGAAGAAAGTTCAAGG 1010
||||||||| ||||||| ||||||| || ||| ||||||| | || ||||||||||||||
Sbjct 946 ATGATATGGGCAATGACGGAGCTCGTTA-AAAACCCGAAACTGATAAAGAAAGTTCAAGG 1004
Query 1011 CGAGATCCGAGATCGCCTTGGCAACAATAGGGAGAGAATTACCAAAGAAGATCTTGATAA 1070
||||||||||| | ||||||| ||||| ||||||||| ||| | |||||| | |||||
Sbjct 1005 TGAGATCCGAGAACAACTTGGCAGCAATAAGGAGAGAATCACCGAGGAAGATGTCGATAA 1064
Query 1071 AGTTCCTTTCTTGAACTTGGTGATCAAGGAAACATTCAGATTACACCCAGTAGCTCCTCT 1130
|||||||| |||||| |||| ||||| ||||||||||| |||||||||| |||||||||
Sbjct 1065 AGTTCCTTACTTGAAGATGGTAATCAAAGAAACATTCAGGTTACACCCAGCAGCTCCTCT 1124
Query 1131 TTTGCTCCCACGGGAAACAATGGCTCACGTCAAGGTTCAAGGCTATGATATTCCTCCCAA 1190
| | |||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1125 TATACTCCCAAGGGAAACAATGGCTCACATCAAAGTTCAAGGCTATGATATTCCTCCCAA 1184
Query 1191 GAGACGGATCTTGGTCAACGCTTGGGCGATAGGAAGAGATCCTAAACTATGGACTGACCC 1250
||| |||||||||||||||| || ||| |||||||||||||| ||||| ||||| ||||
Sbjct 1185 GAGGCGGATCTTGGTCAACGTTTTGGCAATAGGAAGAGATCCCAAACTCTGGACAAACCC 1244
Query 1251 GGAAGAGTTTAAGCCC-GAGAGGTTTATCGATAGCCCTGTGGACTATAGAGGACAACATT 1309
|||||||||||| ||| || |||||||| |||||| ||||||| || |||||||||||||
Sbjct 1245 GGAAGAGTTTAA-CCCTGACAGGTTTATAGATAGCTCTGTGGATTACAGAGGACAACATT 1303
Query 1310 TTGAGCTCTTACCGTTCGGGTCTGGACGAAGGATATGTCCCGGGATGGCGATGGGGATGG 1369
||||||||||| || ||||| || |||||||| |||||||||||| | |||||||| |
Sbjct 1304 ACGAGCTCTTACCATTTGGGTCCGGTCGAAGGATGTGTCCCGGGATGCCAATGGGGATTG 1363
Query 1370 CTACTC-TGGAATTGGGACTCTTGAACTTACTTTACTTCTTCGATTGGAAGTTGCCTGAT 1428
|||| | | ||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1364 CTAC-CGTCGAATTAGGACTCTTGAACTTACTTTACTTCTTCGATTGGAAGTTACCTGAT 1422
Query 1429 GGGATGTCACATAAAGATATCGATACTGAAGAAGCTGGTACTCTTACAGTCGTTAAGAAA 1488
|||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1423 GGGATGACACATAAAGATATCGATACTGAAGAAGCTGGTACTCTTACAATCGTCAAGAAA 1482
Query 1489 GTACATCTAAAGCTTGTTCCAGTTCGAGTTC 1519
|| | ||||||| ||||||||||||||||||
Sbjct 1483 GTTCCTCTAAAGATTGTTCCAGTTCGAGTTC 1513
> Ahg896478 jgi|Araly1|896478|Al_scaffold_0005_444
Length=1260
Score = 1072 bits (580), Expect = 0.0
Identities = 805/911 (88%), Gaps = 25/911 (3%)
Strand=Plus/Plus
Query 16 ATGGCAATCTCTTTGCTCTGTCTTTTTCTCATCACCTTCGTTTCGTTAA-CCATTGTTGG 74
||||||||||||||| |||||||| |||||||| |||| | ||||||| || || ||||
Sbjct 1 ATGGCAATCTCTTTGTTCTGTCTTCTTCTCATCGCCTTTGCGTCGTTAATCC-TTCTTGG 59
Query 75 CT--GCAAGATCAAACGCTCTATATGGAATCTTCCCCCAAGCCCTCCTAAGTTACCGGTC 132
| | |||||||||||||||| |||||||||||| ||||||||||| ||||| || |||
Sbjct 60 -TAAG-AAGATCAAACGCTCTAAATGGAATCTTCCTCCAAGCCCTCCAAAGTTTCCAGTC 117
Query 133 ATCGGAAACTTACACCAAGTTGGAGAATTGCCTCACAGGTCATTTCGACGTCTAGCCGAA 192
|||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||||||
Sbjct 118 ATCGGAAACTTACATCAACTTGGAGAATTGCCTCACAGGTCACTTCAACGTCTAGCCGAA 177
Query 193 AGAACCGGACATGTTATGCTTCTTCACTTAGGGTTTGTCCCTGTAACTGTTATCTCATCG 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AGAACCGGACATGTTATGCTTCTTCACTTAGGGTTTGTCCCTGTAACTGTTATCTCATCG 237
Query 253 AGAGAAGCAGCTGAAGAAGTTCTTAGAACTCATGACCTAGACTGTTGCAGCAGGCCTAAC 312
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAAGAAGCAGCTGAAGAAGTGCTTAGAACTCATGACCTAGACTGTTGCAGCAGGCCTAAG 297
Query 313 CTTGTGGGGTCTAGGCTAATCTCTCGGGGTTTTAAAGATCTCAATTTTACTCCATATGGT 372
||||| ||| | |||||||| |||||||||||||||||| || |||||| ||||| |||
Sbjct 298 CTTGTTGGGACGAGGCTAATTTCTCGGGGTTTTAAAGATGTCGGTTTTACCCCATACGGT 357
Query 373 GAAGAGTGGAAGGAGCGACGTAGGTTCTTGGTTG-GTGAGCTTTTCTGTTCTAAA-AAGC 430
||||||||||||||||| || | ||||||||| | ||||| ||||||||| | || |||
Sbjct 358 GAAGAGTGGAAGGAGCGGCGCAAGTTCTTGGT-GCGTGAGTTTTTCTGTT-TGAAGAAGG 415
Query 431 TTCAGTCTTTTATATATATCAAAGAAGTAGAATGTAACTTTCTGGTCAAGAAACTGTCGG 490
|||||||||| ||||||| ||| | ||||||||||||||| ||||||||||||||||
Sbjct 416 TTCAGTCTTTCGGGTATATCAGAGAGGAAGAATGTAACTTTCTTGTCAAGAAACTGTCGG 475
Query 491 AATCAGCAGTGGATC-AATCTCCAGTCGATTTGAGCAAAACCCTTTTCTGGCTAGCTGCG 549
||||||||||||||| || ||||||||||| ||||||||||||||||||||||| | ||
Sbjct 476 AATCAGCAGTGGATCGAA-CTCCAGTCGATATGAGCAAAACCCTTTTCTGGCTAACCGCC 534
Query 550 AGTATCCTGTTTAGAGTTGCTTTTGGACAGAGTTTCCACGAGAGTGAGTTTACCGATACA 609
|||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| |
Sbjct 535 AGTATCCTGTTTAGAGTTGCTTCTGGACAGAGTTTCCACGAGAGTAAGTTTATCGATAAA 594
Query 610 GACAAGATCGATGAACTTGTATTTGAAACCGAGACAGCTCAAGG-TAGTTTCACTTGCTC 668
|||||| ||||||| ||||| |||||| ||||||||||||| || |||||||||||||||
Sbjct 595 GACAAGGTCGATGAGCTTGTGTTTGAAGCCGAGACAGCTCA-GGCTAGTTTCACTTGCTC 653
Query 669 TGATTTCTTCCCTATCGCCGGACTTGGATGGCTTGTTGACTGGATTTCCGGACAACACAA 728
|||||||||||| || ||||||||||||||| | |||||||| |||||||| ||||||||
Sbjct 654 TGATTTCTTCCCCATTGCCGGACTTGGATGGATCGTTGACTGTATTTCCGGGCAACACAA 713
Query 729 GAGGCTCAACGATGTTTTCCTCAAGCTCGATGCTCTGTTACA-GCATGTGATTGATGATC 787
||||||||| ||||||||| ||||||| ||||||||||| || | |||||| |||||||
Sbjct 714 GAGGCTCAAAGATGTTTTCTTCAAGCTGGATGCTCTGTTTCAAGG-TGTGATCGATGATC 772
Query 788 ATTCAAACCCTGG-A-A-GATC-GAAAGATCACAAAGATATTGTCGATGTGATGTTGGAT 843
||| | | || || | | |||| ||| ||||||| ||||||||||||| | |||||||||
Sbjct 773 ATTTACATCCGGGCAGAAGATCTGAA-GATCACAGAGATATTGTCGATATAATGTTGGAT 831
Query 844 GTGATGCATAAACAAGGCAAAGATGATT-CTTTGAGGCTCACAAT-AGATCATATTAAGG 901
|||||||||||||||||||||||| ||| | |||| ||||||||| | || | || ||||
Sbjct 832 GTGATGCATAAACAAGGCAAAGAT-ATTTCCTTGAAGCTCACAATCA-ATAACATCAAGG 889
Query 902 GGCTTCTCACG 912
| |||| |||
Sbjct 890 GAATTCTAACG 900
Score = 525 bits (284), Expect = 4e-148
Identities = 332/356 (93%), Gaps = 0/356 (0%)
Strand=Plus/Plus
Query 1164 GGTTCAAGGCTATGATATTCCTCCCAAGAGACGGATCTTGGTCAACGCTTGGGCGATAGG 1223
||||||||||||| |||||||||| |||| ||||||||||||||| ||||||||||||||
Sbjct 900 GGTTCAAGGCTATAATATTCCTCCGAAGACACGGATCTTGGTCAATGCTTGGGCGATAGG 959
Query 1224 AAGAGATCCTAAACTATGGACTGACCCGGAAGAGTTTAAGCCCGAGAGGTTTATCGATAG 1283
||||||||||||| | ||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct 960 AAGAGATCCTAAAGTTTGGACAAACCCGGAAGAGTTTAACCCCGAGAGGTTTATCAATAG 1019
Query 1284 CCCTGTGGACTATAGAGGACAACATTTTGAGCTCTTACCGTTCGGGTCTGGACGAAGGAT 1343
|||| |||| || || ||||||||||||||||| ||||||||||| ||||| |||||| |
Sbjct 1020 CCCTTTGGATTACAGTGGACAACATTTTGAGCTATTACCGTTCGGCTCTGGTCGAAGGGT 1079
Query 1344 ATGTCCCGGGATGGCGATGGGGATGGCTACTCTGGAATTGGGACTCTTGAACTTACTTTA 1403
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1080 ATGTCCCGGGATGGCGATGGGGATGGCTACTGTGGAATTGGGACTCTTGAACTTACTTTA 1139
Query 1404 CTTCTTCGATTGGAAGTTGCCTGATGGGATGTCACATAAAGATATCGATACTGAAGAAGC 1463
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1140 CTTCTTCGATTGGAAGTTGCCTGATGGGATGACACATAAAGATATCGATACTGAAGAAGC 1199
Query 1464 TGGTACTCTTACAGTCGTTAAGAAAGTACATCTAAAGCTTGTTCCAGTTCGAGTTC 1519
||||||||||||| |||| |||||||| | ||||||||||||||||||||||||||
Sbjct 1200 TGGTACTCTTACAATCGTCAAGAAAGTTCCTCTAAAGCTTGTTCCAGTTCGAGTTC 1255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57059187010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5