BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26200.1
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484388 jgi|Araly1|484388|fgenesh2_kg.5__380__AT3G26200.1 2510 0.0
Ahg484387 jgi|Araly1|484387|fgenesh2_kg.5__379__AT3G26190.1 1784 0.0
Ahg898261 jgi|Araly1|898261|Al_scaffold_0005_2227 106 6e-22
> Ahg484388 jgi|Araly1|484388|fgenesh2_kg.5__380__AT3G26200.1
Length=1583
Score = 2510 bits (1359), Expect = 0.0
Identities = 1507/1579 (95%), Gaps = 8/1579 (1%)
Strand=Plus/Plus
Query 44 aaaaaaaCAGATCAAATCAAGAATGTCGATCTCTCTCTATTTCCTTTTGCTCTTGCCTCT 103
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1 AAAAAAACAGATCAAATCAAGAATGTCGATCTTTCTCTATCTCCTTTTGCTCTTGCCTCT 60
Query 104 CTTTTTAATCTTCTTCAAAAAGCTCTCACCTTCTAAAGGAAAGCTTCCTCCTGGACCTCT 163
|||||| ||||||||||||| ||||||| |||||||||| |||||||| |||||||||||
Sbjct 61 CTTTTTTATCTTCTTCAAAAGGCTCTCAACTTCTAAAGGGAAGCTTCCACCTGGACCTCT 120
Query 164 AGGTCTTCCGATTATCGGGAACTTGCACCAACTTGGAAAATCTCTCCATAGATCTTTTCA 223
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGGTCTTCCGATTATCGGAAACTTGCACCAACTTGGAAAATCTCTCCATAGATCTTTTCA 180
Query 224 TAAACTTTCTCAAAACTATGGACCCGTGATGTTTCTACATTTCGGTGTGGTCCCTGTGGT 283
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TAAACTCTCTCAAAACTATGGACCCGTGATGTTTCTACATTTCGGTGTGGTCCCTGTGGT 240
Query 284 TGTGGTCTCCACAAGAGAAGCAGCTGAAGAAGTTCTCAAGACTCATGATCTCGAGACTTG 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGTGGTCTCCACAAGAGAAGCAGCTGAAGAAGTTCTCAAGACTCATGATCTCGAGACTTG 300
Query 344 TACCCGACCAAAGCTAACAGCGACCAAATTGTTTTCTTACAACTACAAAGACATTGGCTT 403
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 TACCCGACCAAAGCTAACCGCGACCAAGTTGTTTTCTTACAACTACAAAGACATTGGCTT 360
Query 404 CGCTCAATACGGTGATGACTGGAGAGAGATGAGGAAGCTTGCGATGCTCGAGCTTTTTAG 463
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGCTCAATATGGTGATGACTGGAGAGAGATGAGGAAGCTTGCGATGCTCGAGCTTTTTAG 420
Query 464 CTCGAAAAAGCTCAAGGCTTTCAGGTATATTAGAGAAGAAGAGAGTGAAGTCCTAGTCAA 523
||||||||||||||||||||| ||||||| |||||||||||||||||| |||| |||||
Sbjct 421 TTCGAAAAAGCTCAAGGCTTTCCGGTATATAAGAGAAGAAGAGAGTGAATTCCTCGTCAA 480
Query 524 TAAACTCTCGAAATCTGCTGAGACACGAACTATGGTAGACTTGAGAAAAGCTCTTTTCTC 583
||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||||||
Sbjct 481 GAAACTCTCGAAATCTGCTGAGACACAAACTATGGTGGATTTGAGAAAAGCGCTTTTCTC 540
Query 584 TTATACCGCTAGTATCGTATGTAGACTCGCTTTTGGACAGAACTTCCATGAGTGCGATTT 643
|||||| ||||| ||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 TTATACTGCTAGCATCATATGTAGACTCGCTTTTGGGCAGAACTTCCATGAGTGCGATTT 600
Query 644 TGTCGATATGGATAAAGTTGAAGATCTTGTGCTCGAATCTGAGACCAATCTTGGCTCATT 703
|||||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 601 TGTCGATATGGACAAAGTTGAGGAGCTTGTGCTCGAGTCTGAGACCAATCTTGGCTCATT 660
Query 704 CGCGTTCACTGACTTCTTCCCCGCAGGTCTTGGGTGGGTTATAGACCGGATCTCTGGCCA 763
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 661 CGCGTTCACTGACTTCTTCCCCGCCGGTCTTGGGTGGGTTATAGACCGGATCTCTGGCCA 720
Query 764 ACATTCGGAGTTGCACAAAGCCTTTGCTAGACTTAGTAATTTCTTTCAACATGTGATCGA 823
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 721 ACATTCGGAGTTGCACAAAGCCTTTGCCAGACTTAGTAATTTCTTTCAACATGTGATCGA 780
Query 824 TGATCACTTGAAGCCCGGGCAATCTCAAGATCATTCAGACATCATTGGTGTCATGTTAGA 883
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGATCACTTGAAGCCCGGCCAATCTCAAGATCATTCAGACATCATTGGTGTCATGTTAGA 840
Query 884 TATGATCAATAAAGAGAGTAAAGTCGGTTCCTTCCAAGTCACCTACGACCATCTTAAAGG 943
|||||||||||||||||| |||||||||||||| |||||||||| || |||||||||||
Sbjct 841 TATGATCAATAAAGAGAGCAAAGTCGGTTCCTTTGAAGTCACCTATGATCATCTTAAAGG 900
Query 944 AGTCATGTCGGATGTGTTTTTAGC-GGGAGTGAACGCAGGAGCGATCACAATGATATGGG 1002
|||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||
Sbjct 901 AGTCATGTCGGATGTGTTTTTAGCCGGG-GTTAACGCAGGAGCGATCACAATGATATGGG 959
Query 1003 CGATGACAGAGCTAGCCAGACATCCGAGAGTGATGAAGAAACTTCAACAAGAGATTCGAG 1062
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CGATGACAGAGCTAGCTAGACATCCGAGAGTGATGAAGAAACTTCAACAAGAGATTCGAG 1019
Query 1063 AAA-TACTCGGAGACAACAAAGAAAAAATCACGGAACAAGATCTCGAAAAGGTTCACTAC 1121
|| | || |||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 1020 CAACT-CTTGGAGACAACAAAGAAAAAATCACGGAGCAAGATCTCGAAAAAGTTCATTAC 1078
Query 1122 TTGAAACTTGTGATCGAAGAAACATTCAGATTACATCCTCCAGCTCCTCTCTTGCTACCT 1181
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1079 CTGAAACTTGTGATCGAAGAAACATTCAGATTACATCCACCAGCTCCTCTCTTGCTTCCA 1138
Query 1182 AGAGAGACAATGTCTGACTTAAAGATTCAAGGCTACAATATTCCCAAGAACACGATGATA 1241
|||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1139 AGAGAGACTATGTCCGACTTAAAGATTCAAGGCTACAATATCCCCAAGAACACGATGATC 1198
Query 1242 GAGATCAATACTTATTCAATAGGACGCGATCCTAATTGCTGGGAAAACCCTAACGATTTC 1301
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GAGATCAACACTTATTCAATAGGACGCGATCCTAATTGCTGGGAAAACCCTAACGATTTC 1258
Query 1302 AACCCGGAGAGATTTATCGATAGCCCTGTCGAATATAAGGGTCAACATTACGAGTTGTTG 1361
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AACCCCGAGAGATTTATCGATAGCCCTGTCGAATATAAGGGTCAACATTACGAGTTGTTG 1318
Query 1362 CCTTTTGGTGCTGGTCGCAGGATTTGTCCAGGAATGGCTACGGGGATAACTATCGTCGAG 1421
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1319 CCTTTTGGTGCTGGTCGCAGGATTTGTCCTGGAATGGCTACGGGTATAACTATCGTCGAG 1378
Query 1422 CTCGGTTTACTTAATGTTCTTTACTTCTTTGATTGGAGTTTGCCTGATGGAATGAAAATT 1481
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CTCGGTTTACTTAACGTTCTCTACTTCTTTGATTGGAGTTTGCCTGATGGAATGAAAATT 1438
Query 1482 GAAGACATAGACATGGAAGAAGCTGGAGCTTTCGTCGTCGCCAAGAAAGTCCCTCTTGAG 1541
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1439 GAAGACATAGACATGGAAGAAGCTGGAGCTTTCGTCATCGCCAAGAAAGTCCCTCTTGAG 1498
Query 1542 CTGATTCCAACTCCACATCAGTGGTGAAGTTAT-GAAGAGGTGTAAATAATCTAATAAGA 1600
||| |||||||||||||||||||||||||| || ||||| ||||||||| | ||||||||
Sbjct 1499 CTGGTTCCAACTCCACATCAGTGGTGAAGT-ATTGAAGATGTGTAAATAGTATAATAAGA 1557
Query 1601 TCAAGATTTTCTCTTGCGA 1619
||||||||| |||| ||||
Sbjct 1558 TCAAGATTT-CTCT-GCGA 1574
> Ahg484387 jgi|Araly1|484387|fgenesh2_kg.5__379__AT3G26190.1
Length=1512
Score = 1784 bits (966), Expect = 0.0
Identities = 1314/1485 (88%), Gaps = 12/1485 (1%)
Strand=Plus/Plus
Query 65 AATGTCGATCTCTCTCTATTTCCTTTTGCTCTTGCCTCTCTTT-TTAATCTTCTTCAAAA 123
||||||||||| ||||| |||||| ||||||| ||||||||| || | |||| ||| |
Sbjct 2 AATGTCGATCTTTCTCTGTTTCCTCCTGCTCTTACCTCTCTTTCTT-GTTTTCTACAAGA 60
Query 124 AGCTCTCACCTTCTAAAGGAAAGCTTCCTCCTGGACCTCTAGGTCTTCCGATTATCGGGA 183
||| ||||| || ||||| ||||||||||| |||||| ||||||||||||| ||||| |
Sbjct 61 GGCTTTCACCGTCAAAAGGGAAGCTTCCTCCGGGACCTATAGGTCTTCCGATCATCGGAA 120
Query 184 ACTTGCACCAACTTGGAAAATCTCTCCATAGATCTTTTCATAAACTTTCTCAAAACTATG 243
||||||||||||||||||||||||| || ||||||||||||||||| || ||| ||||
Sbjct 121 ACTTGCACCAACTTGGAAAATCTCTTCACAGATCTTTTCATAAACTCTCCCAAGTGTATG 180
Query 244 GACCCGTGATGTTTCTACATTTCGGTGTGGTCCCTGTGGTTGTGGTCTCCACAAGAGAAG 303
|||||||||||||||| | ||||||||||||||||||||| ||| |||| |||| |||||
Sbjct 181 GACCCGTGATGTTTCTTCGTTTCGGTGTGGTCCCTGTGGTAGTGTTCTCTACAAAAGAAG 240
Query 304 CAGCTGAAGAAGTTCTCAAGACTCATGATCTCGAGACTTGTACCCGACCAAAGCTAACAG 363
| || ||||||||| | ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 241 CTGCCGAAGAAGTTTTAAAGACTCATGATCTCGAGACTTGTACCCGACCAAAGCTATCTG 300
Query 364 CGACCAAATTGTTTTCTTACAACTACAAAGACATTGGCTTCGCTCAATACGGTGATGACT 423
||||| ||||||||||||||||||||||| |||||||| || || |||||||| ||||
Sbjct 301 CGACCGGGTTGTTTTCTTACAACTACAAAGATATTGGCTTTGCACAGTACGGTGAAGACT 360
Query 424 GGAGAGAGATGAGGAAGCTTGCGATGCTCGAGCTTTTTAGCTCGAAAAAGCTCAAGGCTT 483
||||||||||||| |||||||||||||||||||| |||||||| |||||| | |||||||
Sbjct 361 GGAGAGAGATGAGAAAGCTTGCGATGCTCGAGCTCTTTAGCTCAAAAAAGTTAAAGGCTT 420
Query 484 TCAGGTATATTAGAGAAGAAGAGAGTGAAGTCCTAGTCAATAAACTCTCGAAATCTGCTG 543
||||||||||||||||||||||||||||| | |||||||| ||| ||||| | ||||||
Sbjct 421 TCAGGTATATTAGAGAAGAAGAGAGTGAATTGCTAGTCAAGAAAGTCTCGGACTCTGCTC 480
Query 544 AGACACGAACTATGGTAGACTTGAGAAAAGCTCTTTTCTCTTATACCGCTAGTATCGTAT 603
| |||| |||| |||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 481 AAACACAAACTTTGGTGGATTTGAGAAAGGCTCTTTTCTCTTATACCGCTAGTATCGTAT 540
Query 604 GTAGACTCGCTTTTGGACAGAACTTCCATGAGTGCGATTTTGTCGATATGGATAAAGTTG 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTAGACTCGCTTTTGGACAGAACTTCCATGAGTGCGATTTTGTCGATATGGATAAAGTTG 600
Query 664 AAGATCTTGTGCTCGAATCTGAGACCAATCTTGGCTCATTCGCGTTCACTGACTTCTTCC 723
|||| |||||||| || |||||||||||||||||||||||||| |||| |||||||||||
Sbjct 601 AAGAGCTTGTGCTTGAGTCTGAGACCAATCTTGGCTCATTCGCATTCATTGACTTCTTCC 660
Query 724 CCGCAGGTCTTGGGTGGGTTATAGACCGGATCTCTGGCCAACATTCGGAG-TTGCACAAA 782
| || ||||||||||||| ||| || ||||| || || ||||||||| || |||||||||
Sbjct 661 CTGCCGGTCTTGGGTGGGCTATTGATCGGATATCCGGTCAACATTCG-AGGTTGCACAAA 719
Query 783 GCCTTTGCTAGACTTAGTAATTTCTTTCAACATGTGATCGATGATCACTTGAAGCCCGGG 842
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 720 GCCTTTGCTAGACTAAGTAATTTCTTTCAACATGTGATCGATGATCACTTGAAGCCTGGG 779
Query 843 CAATCTCAAGATCATTCAGACATCATTGGTGTCATGTTAGATATGATCAATAAAGAGAGT 902
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 CAATCTCAAGATCATTCAGACATCATTGGTGTCATGTTGGATATGATCAATAAAGAGAGC 839
Query 903 AAAGTCGGTTCCTTCCAAGTCACCTACGACCATCTTAAAGGAGTCATGTCGGATGTGTTT 962
|||||||| ||||| |||||||||| || ||||| |||||||||||||||||||| |||
Sbjct 840 AAAGTCGGCTCCTTTAAAGTCACCTATGATCATCTAAAAGGAGTCATGTCGGATGTATTT 899
Query 963 TTAGCGGGAGTGAACGCAGGAGCGATCACAATGATATGGGCGATGACAGAGCTAGCCAGA 1022
|| || |||||||||||||||||||||||| |||||||||||||||| ||| || | |||
Sbjct 900 TTGGCCGGAGTGAACGCAGGAGCGATCACATTGATATGGGCGATGACCGAGTTAACAAGA 959
Query 1023 CATCCGAGAGTGATGAAGAAACTTCAACAAGAGATTCGAGAAATACTCGGAGACAACAAA 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CATCCGAGAGTGATGAAGAAACTTCAACAAGAGATTCGAGAAATACTCGGAGACAACAAA 1019
Query 1083 GAAAAAATCACGGAACAAGATCTCGAAAAGGTTCACTACTTGAAACTTGTGATCGAAGAA 1142
|||||||||||||| |||||||||||||| ||||||||| |||||||||||||| |||||
Sbjct 1020 GAAAAAATCACGGAGCAAGATCTCGAAAAAGTTCACTACCTGAAACTTGTGATCCAAGAA 1079
Query 1143 ACATTCAGATTACATCCTCCAGCTCCTCTCTTGCTACCTAGAGAGACAATGTCTGACT-T 1201
|||||| || |||| || || |||||||||||||| || ||||||||||||||||| | |
Sbjct 1080 ACATTCCGACTACACCCACCCGCTCCTCTCTTGCTCCCAAGAGAGACAATGTCTGA-TGT 1138
Query 1202 AAAGATTCAAGGCTACAATATTCCCAAGAACACGATGATAGAGATCAATACTTATTCAAT 1261
||||||| ||| ||| | |||||||| ||||| ||||| |||||||| ||||| ||||
Sbjct 1139 CAAGATTCTAGGTTACGACATTCCCAAAAACACAATGATCGAGATCAACACTTACGCAAT 1198
Query 1262 AGGACGCGATCCTAATTGCTGGGA-AAACCCTAACGA-TTTCAACCCGGAGAGATTTATC 1319
|||||| ||||| ||||||||| | |||||||||||| ||| | ||| ||||| ||| |
Sbjct 1199 AGGACGTGATCCCAATTGCTGG-ACAAACCCTAACGAGTTT-ATCCCTGAGAGGTTTGTT 1256
Query 1320 GATAGCCCTGTCGAATATAAGGGTCAACATTACGAGTTGTTGCCTTTTGGTGCTGGTCGC 1379
||||||||| |||| || |||||||| |||| || |||||||| || |||| || ||
Sbjct 1257 GATAGCCCTATCGACTACAAGGGTCAGCATTTTGAATTGTTGCCATTCGGTGGAGGCCGT 1316
Query 1380 AGGATTTGTCCAGGAATGGCTACGGGGATAACTATCGTCGAGCTCGGTTTACTTAATGTT 1439
||||| ||||| || ||||| || ||||| || ||||| || || || | ||||| |||
Sbjct 1317 AGGATCTGTCCCGGGATGGCCACAGGGATGACCATCGTGGAACTTGGCCTCCTTAACGTT 1376
Query 1440 CTTTACTTCTTTGATTGGAGTTTGCCTGATGGAATGAAAATTGAAGACAT-AGACATGGA 1498
||||| ||||| ||||||||||| || ||||||||||| |||| |||||| | |||||||
Sbjct 1377 CTTTATTTCTTCGATTGGAGTTTACCCGATGGAATGAATATTGCAGACATTA-ACATGGA 1435
Query 1499 AGAAGCTGGAGCTTTCGTCGTCGCCAAGAAAGTCCCTCTTGAGCT 1543
||||||||||||||||||| | |||||||||||||| ||||||||
Sbjct 1436 AGAAGCTGGAGCTTTCGTCATTGCCAAGAAAGTCCCACTTGAGCT 1480
> Ahg898261 jgi|Araly1|898261|Al_scaffold_0005_2227
Length=1413
Score = 106 bits (57), Expect = 6e-22
Identities = 162/211 (77%), Gaps = 14/211 (7%)
Strand=Plus/Plus
Query 1299 TTCAACCCGGAGAGATTTATCG-ATAGCCCT-G-TCGAA-TATAAGGGTCAACATTACGA 1354
||||| || ||||| ||| ||| ||| ||| | || || || || ||||| |||||||
Sbjct 1204 TTCAATCCTGAGAGGTTT-TCGAATA--CCTCGATC-AACTACAAAGGTCAGGATTACGA 1259
Query 1355 GTTGTTGCCTTTTGGTGCTGGTCGCAGGATTTGTCCAGGAATG-GCTACGGGGATAACTA 1413
| | ||||| ||||| || || || || | ||||| || ||| || ||| || || |
Sbjct 1260 GCTCTTGCCATTTGGAGCAGGCCGTAGAAGCTGTCCTGGTATGAACT-TGGGAATCACCA 1318
Query 1414 -TCGTCGAGCTCGG-TTTACTTAATGTTCTTTACTTCTTTGATTGGAGTTTGCCTGATGG 1471
|| | ||||| || || ||||| |||||||||||||||||||||||||||| ||||
Sbjct 1319 TTC-TTGAGCTAGGCCTT-CTTAACATTCTTTACTTCTTTGATTGGAGTTTGCCCAATGG 1376
Query 1472 AATGAAAATTGAAGACATAGACATGGAAGAA 1502
||||| ||||||||||| |||||||| |||
Sbjct 1377 AATGACCATTGAAGACATTGACATGGAGGAA 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66619838505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5