BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26280.1
Length=1712
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936324 jgi|Araly1|936324|scaffold_500515.1 2231 0.0
Ahg484390 jgi|Araly1|484390|fgenesh2_kg.5__382__AT3G26220.1 1038 0.0
Ahg346986 jgi|Araly1|346986|fgenesh1_pg.C_scaffold_5000378 316 3e-85
> Ahg936324 jgi|Araly1|936324|scaffold_500515.1
Length=1552
Score = 2231 bits (1208), Expect = 0.0
Identities = 1414/1515 (93%), Gaps = 8/1515 (1%)
Strand=Plus/Plus
Query 19 CAAACCAGAGGAACGACAATAATGGTGAGTCTTCTATCTTTTTTCTTGCTTCTACTCGTC 78
|||||||||||| ||| ||||||||||| | |||||||||| |||||||||||| |||||
Sbjct 1 CAAACCAGAGGATCGAAAATAATGGTGATTTTTCTATCTTTCTTCTTGCTTCTATTCGTC 60
Query 79 CCCATTTTCTTCTTGTTAATCTTCACCAAGAAGATCAAGGAGTC-AAAACAAAATCTTCC 137
||||||||||||| |||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 61 CCCATTTTCTTCTCGTTAATCTTCACCAAGAAGATCAAAGAGTCGAAAAC-AAATCTTCC 119
Query 138 TCCTGGCCCAGCAAAGCTTCCGATCATCGGAAACCTACACCAGCTCCAAGGGTTGCTTCA 197
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCCTGGCCCAGCAAAACTTCCGATCATCGGAAACCTACACCAGCTCCAAGGGTTGCTTCA 179
Query 198 TAAATGTCTTCACGATCTCTCCAAGAAACACGGACCTGTGATGCATCTCCGTCTAGGGTT 257
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 TAGATGTCTTCACGATCTCTCCAAGAAACACGGACCAGTGATGCATCTCCGTCTAGGGTT 239
Query 258 TGCCCCAATGGTCGTAATTTCATCAAGTGAAGCAGCTGAAGAAGCTCTTAAAACACATGA 317
||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 TGCATCAATGGTCATAATTTCATCGGGTGAAGCAGCTGAAGAAGCTCTTAAAACACATGA 299
Query 318 CCTTGAGTGTTGTTCAAGACCTATCACTATGGCCTCAAGGGTTTTTTCGCGTAACGGTAA 377
||||||||||||||||||||||| |||||| ||| |||||||||| ||||| ||||||||
Sbjct 300 CCTTGAGTGTTGTTCAAGACCTAACACTATCGCCGCAAGGGTTTTCTCGCGGAACGGTAA 359
Query 378 AGACATCGGATTTGGGGTTTACGGTGATGAATGGAGAGAGCTGCGTAAGCTTTCGGTTCG 437
|||||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 360 AGACATCGGATTCGGGGTATATGGTGATGAATGGAGAGAGCTGCGTAAGCTTTCTGTTCG 419
Query 438 CGAATTCTTTAGCGTGAAAAAAGTTCAATCCTTCAAGTATATTAGAGAGGAAGAGAATGA 497
|||||||||||||||||||| |||||||| |||| ||| ||||||||||||||||||||
Sbjct 420 TGAATTCTTTAGCGTGAAAAAGGTTCAATCTTTCAGGTACATTAGAGAGGAAGAGAATGA 479
Query 498 CTTGATGATCAAGAAACTGAAAGAATTGGCTTCGAAGCAATCTCCGGTGGATTTGAGCAA 557
||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 480 CTTGATGGTCAAGAAACTGAGAGAATTGGCTTCGAAGCAATCTCCGGTGGACTTGAGCAA 539
Query 558 AATCCTCTTTGGTCTCACTGCGAGTATCATATTCAGAACCGCCTTTGGACAAAGTTTCTT 617
| ||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 540 AGCCCTCTTTGGCCTCACCGCGAGTATCATATTCAGAACCGCCTTTGGACAGAGTTTCTA 599
Query 618 TGATAACAAGCATGTCGATCAGGAAAGCATCAAAGAACTGATGTTTGAATCTCTGAGCAA 677
||| ||||||||| ||||||| ||||| ||||||||||||||||||||||||| ||||||
Sbjct 600 TGAGAACAAGCATATCGATCAAGAAAGGATCAAAGAACTGATGTTTGAATCTCAGAGCAA 659
Query 678 TATGACTTTTAGATTCTCTGATTTTTTCCCTACTGCTGGTCTTAAATGGTTTATAGGCTT 737
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TATGACTTTCAGATTCTCTGATTTTTTCCCTACTGCTGGTCTTAAATGGTTTATAGGCTT 719
Query 738 TGTGTCAGGCCAACATAAGAGGCTTTACAACGTCTTCAACAGGGTTGATACtttttttAA 797
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 720 TGTGTCAGGCCAACATCAGAGGCTTTACAACGTCTTCAACAGGGTTGACACTTTTTTCAA 779
Query 798 TCATATAGTTGATGATCATCACTCGAAGAAAGCAACTCAAGATCGTCCTGATATGGTCGA 857
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 780 TCATATAGTTGATGATCATCACTCGAAGAAACCAACTCAAGATCGTCCTGATATGGTCGA 839
Query 858 CGCTATCTTAGATATGATAGATAATGAACAACAATATGCATCTTTCAAGCTCACCGTTGA 917
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 840 CGCTATCTTAGATATGATAGATAATCAACAACAATATGCATCTTTCAAGCTCACCGTTGA 899
Query 918 TCATCTCAAAGGAGTCCTCTCAAATATATATCACGCTGGAATTGACACAAGCGCCATCAC 977
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 900 TCATCTCAAGGGAGTCCTCTCAAATATATATCACGCTGGAATAGACACAAGCGCCATCAC 959
Query 978 CTTGATTTGGGCGATGGCAGAGCTCGTTAGAAACCCGCGGGTAATGAAGAAA-GCTCAAG 1036
|||||||||||||||||||||||||||||||||| | || ||||| ||| | |||||
Sbjct 960 AATGATTTGGGCGATGGCAGAGCTCGTTAGAAACCCTAGAGTGATGAA-AAAGGTTCAAG 1018
Query 1037 ACGAGATCCGAACTTGCATTGGAATCAAACAGGAAGGAAGAATCATGGAAGAAGATCTTG 1096
| || |||| |||||| |||||||||||||| ||||||||||| || |||||||||||||
Sbjct 1019 AAGAAATCCAAACTTGTATTGGAATCAAACAAGAAGGAAGAATTATTGAAGAAGATCTTG 1078
Query 1097 ATAAGCTTCAATACTTGAAGCTTGTGGTGAAAGAAACCTTAAGACTACACCCAGCAGCTC 1156
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AGAAGCTTCAATACTTGAAGCTTGTGGTGAAAGAAACCTTAAGACTACACCCAGCAGCTC 1138
Query 1157 CTCTTTTACTTCCTCGAGAAACAATGGCTGATATCAAGATTCAAGGCTACGACATTCCTC 1216
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1139 CTCTTTTACTTCCAAGAGAAACAATGGCTGATATCAAGATTCAAGGCTATGACATTCCTC 1198
Query 1217 AGAAAAGAGCT-CTTCTT-GTTAATGCATGGTCTATAGGACGAGATCCGGAATCCTGGAA 1274
||||| | || ||| || ||||| || ||||| ||||||||||||||| ||| |||||
Sbjct 1199 GGAAAACA-CTTCTT-TTCGTTAACGCGTGGTCGATAGGACGAGATCCGAAATACTGGAG 1256
Query 1275 AAATCCTGAAGAGTTTAACCCGGAGAGGTTTATTGATTGTCCTGTGGATTACAAGGGACA 1334
||| ||||| ||||||||||||||||||||| | ||||||| |||||||||||| |||||
Sbjct 1257 AAACCCTGAGGAGTTTAACCCGGAGAGGTTTCTCGATTGTCATGTGGATTACAAAGGACA 1316
Query 1335 TAGCTTTGAGTTGTTACCATTTGGTTCTGGTCGGAGAATTTGTCCAGGAATAGCTATGGC 1394
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1317 TAGCTTTGAGTTGTTACCATTTGGTTCTGGTCGGAGGATTTGTCCAGGAATAGCTATGGC 1376
Query 1395 GATCGCAACCATTGAATTGGGGCTCTTGAATTTGCTCTACTTCTTTGATTGGAATATGCC 1454
||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||
Sbjct 1377 GATCGCAACCATTGAATTGGGACTCTTGAATTTGCTTTACTTCTTTGACTGGAAAATGCC 1436
Query 1455 TGAGAAGAAGAAAGATATGGACATGGAAGAAGCTGGTGATCTCACTGTTGATAAGAAAGT 1514
|||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||
Sbjct 1437 TGAGGAGAAGAAAGATATGGACATGGAAGAAGCTGGTGATGTCACTGTTGTTAAGAAGGT 1496
Query 1515 TCCTCTTGAGCTTCT 1529
|||||||||||||||
Sbjct 1497 TCCTCTTGAGCTTCT 1511
> Ahg484390 jgi|Araly1|484390|fgenesh2_kg.5__382__AT3G26220.1
Length=1599
Score = 1038 bits (562), Expect = 0.0
Identities = 1181/1471 (80%), Gaps = 78/1471 (5%)
Strand=Plus/Plus
Query 112 ATCAAGGAGTCAAAACAAAATCTTCCTCCTG-GCCCAGC-AAAGCTTCCGATCATCGGAA 169
||||| || || |||| |||||||||||| | ||||| | |||||||| ||||||||||
Sbjct 35 ATCAAAGACTCGAAACGAAATCTTCCTCC-GAGCCCA-CTGAAGCTTCCAATCATCGGAA 92
Query 170 ACCTACACCAGCTCCAAGGGTTGCTTCATAAATGTCTTCACGATCTCTCCAAGAAACACG 229
||||| ||||||| | ||| ||| |||| | |||||||||||||||||||||||| ||||
Sbjct 93 ACCTATACCAGCTTCGAGGATTGTTTCACAGATGTCTTCACGATCTCTCCAAGAAGCACG 152
Query 230 GACCTGTGATGCATCTCCGTCTAGGGTTTGCCCCA-ATGGTCGTAATTTCATC-AAGTGA 287
|||| ||| ||| |||||||||||| |||| | | ||||| || || ||||| || ||
Sbjct 153 GACCCGTGCTGCTTCTCCGTCTAGGTTTTG-TCGATATGGTTGTGATCTCATCGAA-AGA 210
Query 288 AGCAGCTGAAGAAGCTCTTAAAACACATGACCTTGAGTGTTGTTCAAGACCTATCACTAT 347
||||||||||||| ||| ||| ||||||||||||||||||| | ||||||| || |
Sbjct 211 AGCAGCTGAAGAAATTCTCAAAGTACATGACCTTGAGTGTTGTACCAGACCTAAGACCAA 270
Query 348 GGCCTCAAGGGTTTTTTCGCGTAACGGTAAAGACATCGGATTTGGGGTTTACGGTGATGA 407
|||||| || |||||| ||||||||||||||| |||| | ||||| || |
Sbjct 271 CGCCTCATCAAAATTCTCGCGTGACGGTAAAGACATCGCCTTTGCGCCATACGGGGAAGT 330
Query 408 ATGGAGAGAGCTGCGTAAGCTTTCGGTTCGCGAA-TTCTTT-AGCGTGAAAAAAGTTCAA 465
| || || ||||||||||||| ||| | || || ||| ||| | |||| |||| |
Sbjct 331 TTTTAGGGAATTGCGTAAGCTTTCCTTTCTC-AAGTT-TTTCAGCACGCAAAAGGTTCGA 388
Query 466 TCCTTCAAGTATATTAGAGAGGAAGAGAATGACTTGATGATCAAGAAACTGAAAGAATTG 525
|| || | ||| || ||||||||||||||||| |||||| ||||||||||||| ||||
Sbjct 389 TCTTTTAGGTACATCAGAGAGGAAGAGAATGATTTGATGGTCAAGAAACTGAAGGAATCA 448
Query 526 GCTTC-GAAGCAA-TCTCCGGTGGATTTGAGCAAAATCCTCTTTGGTCTC-ACT-GCGAG 581
|| || || | || | | |||||||||||| ||| | |||| | || | | | |||
Sbjct 449 GC-TCAGACG-AAGAATACAGTGGATTTGAGCCAAA--CACTTTTCTATCTAGTGGGGAG 504
Query 582 TATCATATTCAGAACCGCCTTTGGACAAAGTTTCTTTGATAACAAGCATGTCGAT-CAGG 640
|||||||||||| | ||||||| ||| | || || |||||||||||| || ||
Sbjct 505 TATCATATTCAGGGCTACCTTTGGGCAACGGTTAGACGAGAACAAGCATGTCAATAAAGA 564
Query 641 AAAGCATCAAAGAACTGATGTTTGAATCTCTGAGCAA-TAT-GA-CTTTTAG-ATTCTCT 696
|||| || ||||||| ||||||| | || || || | | || || | || | ||||
Sbjct 565 AAAG-ATTGAAGAACTCATGTTTG-AGGTC-CAGAAAGT-TGGATCTCTAAGCA-GCTCT 619
Query 697 GATTTTTTCCCTACTGCTGGTCTT-AAATGGTTTATAGG-CTTTGTGTCAGGCCAACATA 754
||| |||| || |||||||| || ||||||||| || |||||||||||| | |||||
Sbjct 620 GATCTTTT-CC--CTGCTGGT-TTGGGATGGTTTAT-GGACTTTGTGTCAGGACGACATA 674
Query 755 AGAGGCTTTACAACGTCTTCAACAG-GGTTGATACtttttttAATCATATAGTTGATGAT 813
||| ||| |||| || ||| | | |||||||||||| | |||||| || |||||| |
Sbjct 675 AGACACTTCACAAAGTTTTCGTC-GAGGTTGATACTTTGCTAAATCATGTAATTGATGGT 733
Query 814 CA--T---CACT-C-GAAG--AAAGCAACTCAAGATCGTCCTGATATGGTCGACGCTATC 864
|| | | | | |||| ||| ||| ||||||||| || ||||| ||||| | |||
Sbjct 734 CACTTGAAGAATCCTGAAGAAAAAACAAATCAAGATCGCCCCGATATCATCGACTCGATC 793
Query 865 TTAGATA-TGATAG-ATAATGAACAACAATATGC-ATCTTTCAAGCTCACCGTTGATCAT 921
||||||| | || | |||| || ||||| || | ||||||||| |||||| ||||||||
Sbjct 794 TTAGATACT-AT-GTATAAACAAGAACAAGAT-CAATCTTTCAAACTCACCATTGATCAT 850
Query 922 CTCAAAGGAGTCCTCTC-AAATATATATCACGCTGGAATTGACACAAGCGCCATCACCTT 980
||||||||| || || | ||||||||||| |||||| | |||||||| ||||||||| |
Sbjct 851 CTCAAAGGAATCATC-CAAAATATATATCTTGCTGGAGTAGACACAAGTGCCATCACCAT 909
Query 981 GATTTGGGCGATGGCAGAGCTCGTTAGAAACCCGCGGGTAATGAAGAAAGCTCAAGACGA 1040
||||||||| ||||||||||| |||| |||||||||||| |||||||||| |||||| ||
Sbjct 910 GATTTGGGCAATGGCAGAGCTTGTTAAAAACCCGCGGGTGATGAAGAAAGTTCAAGATGA 969
Query 1041 GATCCGAACTTGCATTGGAATCAAACAGGAAGGA-AGAATC-ATGGAAGAAGATCTTGAT 1098
||||||||| ||||||||||||||||| ||||| |||||| | |||||||||| | |||
Sbjct 970 GATCCGAACATGCATTGGAATCAAACA-AAAGGAGAGAATCGA-GGAAGAAGATGTCGAT 1027
Query 1099 AAGCTTCAATACTTGAAGCTTGTGGTGAAAGAAACCTTAAGACTACACCCAGCAGCTCCT 1158
|||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1028 AAGCTTCAGTACTTGAAGCTTGTGATCAAAGAAACCTTAAGACTACACCCAGCAGCTCCT 1087
Query 1159 CTTTTACTTCCTCGAGAAACAATGGCTGATATCAAGATTCAAGGCTACGACATTCCTCAG 1218
||||||||||| |||| ||||||| ||||||||||||||||||||||||||| |||| |
Sbjct 1088 CTTTTACTTCCAAGAGAGACAATGGTTGATATCAAGATTCAAGGCTACGACATACCTCGG 1147
Query 1219 AAAAG-AGCTCTTCTTG-TTAATGCATGGTCTATAGGACGAGATCCG-GAA-TCCTGGAA 1274
|||| | |||| ||| ||||| ||||||| ||||||||| | || ||| || ||| |
Sbjct 1148 AAAACCAT-TCTT-TTGGTTAATACATGGTCGATAGGACGA-ACCCCTGAACTC-TGGGA 1203
Query 1275 AAATCCTGAAGAGTTTAACCCGGAGAGGTTTATTGATTGTCCTGTGGATTACAAGGGACA 1334
||| || |||||||||||||| ||||| ||||| |||||||||||||||||||| ||| |
Sbjct 1204 AAACCCCGAAGAGTTTAACCCAGAGAGATTTATCGATTGTCCTGTGGATTACAAAGGAAA 1263
Query 1335 TAGCTTTGAGTTGTTACCATTTGGTTCTGGTCGGAGAATTTGTCCAGGAATAGCTAT-GG 1393
|||||||||| ||||||||||||||||||||||||| || |||||||| |||||| | ||
Sbjct 1264 TAGCTTTGAGATGTTACCATTTGGTTCTGGTCGGAGGATATGTCCAGGGATAGCTTTTGG 1323
Query 1394 CGATCGCAACCATTGAATTGGGGCTCTTGAAT-TTGCTCTACTTCTTTGATTGGA-ATAT 1451
|| || ||| |||||||||| || ||||| || || |||||||||||||||| || |
Sbjct 1324 T-ATAGCGACCGTTGAATTGGGACTATTGAACCTT-CTTTACTTCTTTGATTGGAGAT-T 1380
Query 1452 GCCTGAGAAGAAGAAAGATATGGACATGGAAGAAGCTGGTGAT-CTCACTGTTGAT-AAG 1509
||||||| || | |||||||| ||||||||||| ||||||||| | ||| || || |||
Sbjct 1381 GCCTGAGGAGGATAAAGATATTGACATGGAAGAGGCTGGTGATGC-CACCATT-ATTAAG 1438
Query 1510 AAAGTTCCTCTTGAGCTTCTGCCAGTTATTC 1540
|||||||||||||||||| | ||| ||||||
Sbjct 1439 AAAGTTCCTCTTGAGCTTGTCCCAATTATTC 1469
> Ahg346986 jgi|Araly1|346986|fgenesh1_pg.C_scaffold_5000378
Length=1272
Score = 316 bits (171), Expect = 3e-85
Identities = 233/262 (89%), Gaps = 8/262 (3%)
Strand=Plus/Plus
Query 1284 AGAGTTTAACCCGGAGAGGTTTATTGATTG-TCCTGTGGATTACAAG-GGACATAGCTTT 1341
|||||||| ||||||||||||||| || || |||| |||||||| || ||||| || |||
Sbjct 891 AGAGTTTATCCCGGAGAGGTTTATCGA-TGATCCTATGGATTAC-AGAGGACAGAGTTTT 948
Query 1342 GAGTTGTTACCATTTGGTTCTGGTCGGAGAATTTGTCCAGGAAT-AGCTATGGCGATCGC 1400
||| ||||||||||||||||||| |||||||| ||||||||||| || | ||| ||| ||
Sbjct 949 GAGATGTTACCATTTGGTTCTGGCCGGAGAATGTGTCCAGGAATGAGTTTTGG-GATTGC 1007
Query 1401 AACCATTGAATTGGGGCTCTTGAATTTGCTCTACTTCTTTGATT-GGAATATGCCTGAGA 1459
||||||||||| || |||||||| ||||| ||||| ||||||| ||||| ||||||||
Sbjct 1008 GACCATTGAATTAGGACTCTTGAACTTGCTTTACTTTTTTGATTGGGAAT-TGCCTGAGG 1066
Query 1460 AGAAGAAAGATATGGACATGGAAGAAGCTGGTGATCTCACTGTTGATAAGAAAGTTCCTC 1519
||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct 1067 AGAAGAAAGATATGGACATGGAAGAAGCTGGTGATGTCATTGTTGTTAAGAAAGTTCCTC 1126
Query 1520 TTGAGCTTCTGCCAGTTATTCG 1541
||||||||||||||||||||||
Sbjct 1127 TTGAGCTTCTGCCAGTTATTCG 1148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64220153070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5