BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26340.1
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484397 jgi|Araly1|484397|fgenesh2_kg.5__389__AT3G26340.1 1683 0.0
Ahg471459 jgi|Araly1|471459|fgenesh2_kg.1__1413__AT1G13060.1 913 0.0
Ahg920173 jgi|Araly1|920173|scaffold_101454.1 414 6e-115
Ahg911093 jgi|Araly1|911093|Al_scaffold_0001_1347 263 2e-69
> Ahg484397 jgi|Araly1|484397|fgenesh2_kg.5__389__AT3G26340.1
Length=1078
Score = 1683 bits (911), Expect = 0.0
Identities = 1024/1078 (95%), Gaps = 9/1078 (1%)
Strand=Plus/Plus
Query 2 GAGCTCAAGAAACATCCCTCCATAATTTGCTTCTCTTTTCTCCA-AT-TCTCACACA-TT 58
||||||||||||||||||||||||||||||||||| ||||||| | |||| |||| ||
Sbjct 1 GAGCTCAAGAAACATCCCTCCATAATTTGCTTCTCCATTCTCCACTTCTCTCTCACATTT 60
Query 59 CTTCTGCTTCGTTAATTTTCTACTCGATTTCGCTCTTCAGAAATTTGACAATGAAGCTTG 118
||||| |||||||||||| || |||||||||| ||||||| |||||||||||||||||||
Sbjct 61 CTTCTTCTTCGTTAATTTGCTTCTCGATTTCGTTCTTCAGGAATTTGACAATGAAGCTTG 120
Query 119 ACACTAGTGGATTGGAGACAACTATGCCTGTGATTGGCTTTGGATCAAACAGTGAGATGC 178
| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 121 ATACTAGTGGATTGGAGACAACTATGCCTGTGATTGGTTTTGGATCAAACAGCGAGATGC 180
Query 179 TTGATGGGTTTTCGTCTGCACCTTCGTTTGATCTTCCTCGTACCACTGATTTTGATGGGT 238
|||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||
Sbjct 181 TTGATGGGTTTTCGTCTGTACCTTCGTTTGATCTTCCTCGTACCACCGACTTTGATGGGT 240
Query 239 TTCAGAAAAAAGCTGTGGAGATGGTGAAGCCTGCAAAGGGTACAACTACACTTGCGTTTA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCAGAAAAAAGCTGTGGAGATGGTGAAGCCTGCAAAGGGTACAACTACACTTGCGTTTA 300
Query 299 TCTTTAAGGAAGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATC- 357
||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 301 TCTTTAAAGAAGGTGTTATGGTTGCTGCTGATTCTCGAGCAAGCATGGGAGGATATATCT 360
Query 358 -T-CGTCGCAATCTGTGAAGAAGATTATTGAAATTAATCCTTATATGCTTGGTACAATGG 415
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTATGTCGCAATCTGTGAAGAAGATTATTGAAATTAATCCTTATATGCTTGGTACAATGG 420
Query 416 CTGGTGGTGCTGCTGATTGTCAATTCTGGCACAGAAATCTGGGAATTAAGTGCCGTCTAC 475
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTGGTGGAGCTGCTGATTGCCAATTCTGGCACAGAAATCTGGGAATTAAGTGCCGTCTAC 480
Query 476 ATGAGCTGGCAAACAAAAGGAGAATCTCTGTTTCAGGAGCTTCAAAGCTTCTTGCTAACA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATGAGCTGGCAAACAAAAGGAGAATCTCTGTTTCAGGAGCTTCAAAGCTTCTTGCTAACA 540
Query 536 TGCTCTATTCATATCGTGGAATGGGACTTTCTGTTGGCACAATGATTGCTGGATGGGATG 595
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 TGCTCTATTCATACCGTGGAATGGGACTTTCTGTTGGTACAATGATTGCTGGATGGGATG 600
Query 596 AAACAGGCCCTGGATTGTACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGAT 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAACAGGCCCTGGATTGTACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGAT 660
Query 656 TCTCTGTCGGTTCAGGTTCACCATACGCTTATGGTGTTCTGGACAGCGGATACAAATTCG 715
||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 661 TCTCTGTCGGTTCCGGTTCACCATACGCTTACGGTGTTCTGGACTGCGGATACAAATTCG 720
Query 716 ATATGTCGGTTGAAGAAGCCTCAGAGTTAGCAAGGAGATCCATCTACCATGCTACATTCC 775
|||||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||
Sbjct 721 ATATGTCGGTTGAAGAAGCCTCGGAGTTAGCAAGGAGATCCATATACCACGCCACATTCC 780
Query 776 GTGATGGAGCTAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGGCCGCAAGGATGGACGA 835
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 781 GTGATGGAGCTAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGGCCTCAAGGATGGAAGA 840
Query 836 AACTCTCTGGAGACGACGTTGGCGAGCTACATTACCATTATTACCCCGTGGCTCCAATCA 895
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct 841 AACTCTCTGGAGACGACGTCGGCGAGCTACATTACCATTATTACCCCGTGACTCCAGTCA 900
Query 896 CCGCGGAACATGTGATGGAAGAGGCTGCCGAATAAGTACTGTGATTCTTGTCTATCTTAC 955
||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| |
Sbjct 901 CCGCGGAACATGTGATGGAAGAGGCTGCCGAATAAATACTGTGATTCGTCTCTATCTTTC 960
Query 956 TAAGAGTTTTATTACATCACTTATGTTTTGTTCATCAATGAACAGAATCATAGATTCA-- 1013
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 961 AAAGAGTTTTATTACATCACTTATGTTTTGTTCATCTATGAACAGAATCATAGATTCATC 1020
Query 1014 A-GTTTCTTTTGTATTGCGAATGATGTAGACGTTAGTTTGGCCACAATGATCACGTTG 1070
| ||||| |||||||||| |||||||||||||||||| ||||||||||||||| ||||
Sbjct 1021 ATGTTTCATTTGTATTGCAAATGATGTAGACGTTAGTCTGGCCACAATGATCAGGTTG 1078
> Ahg471459 jgi|Araly1|471459|fgenesh2_kg.1__1413__AT1G13060.1
Length=1021
Score = 913 bits (494), Expect = 0.0
Identities = 705/809 (87%), Gaps = 6/809 (1%)
Strand=Plus/Plus
Query 109 ATGAAGCTTGACACTAGTGGATTGGAGACAACTATGCCTGTGATTGGCTTTGGATCAAAC 168
||||||||||| |||||||| || ||||| | ||||| ||||||| ||||| || | |
Sbjct 12 ATGAAGCTTGATACTAGTGGGTTTGAGACTTCCATGCCCATGATTGGATTTGGCTCGAGC 71
Query 169 AGTGAGATGCTTGATGGGTTTTCGTCTGCACCTTCGTTTGATCTTCCTCGTACCACTGAT 228
||||| |||||||||| | |||| |||| || ||||||||||| || ||||| | ||
Sbjct 72 AGTGATATGCTTGATGAGCTTTCTTCTGTGCCCTCGTTTGATCTACCCCGTACAAAAGAG 131
Query 229 TTTGATGGGTTTCAGAAAAAAGCTGTGGAGATGGTGAAGCCTGCAAAGGGTACAACTACA 288
|||||||| ||||||||| ||||| || ||| |||||| |||||| || ||||| ||
Sbjct 132 TTTGATGGATTTCAGAAAGAAGCTAAAGACATGTTGAAGCATGCAAAAGGAACAACCACT 191
Query 289 CTTGCGTTTATCTT-TAAGGAAGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGG 347
|| || |||||||| |||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 192 CTCGCTTTTATCTTCAAAGG-TGGTGTTATGGTCGCTGCTGATTCTCGGGCTAGCATGGG 250
Query 348 AGGATATATCTCGTCGCAATCTGTGAAGAAGATTATTGAAATTAATCCTTATATGCTTGG 407
||||||||| || || |||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 251 AGGATATATTTCCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCGTATATGCTCGG 310
Query 408 TACAATGGCTGGTGGTGCTGCTGATTGTCAATTCTGGCACAGAAATCTGGGAATTAAGTG 467
||| |||||||| || |||||||| || |||||||||||||||||||| |||||||||||
Sbjct 311 TACGATGGCTGGAGGAGCTGCTGACTGCCAATTCTGGCACAGAAATCTTGGAATTAAGTG 370
Query 468 CCGTCTACATGAGCTGGCAAACAAAAGGAGAATCTCTGTTTCAGGAGCTTCAAAGCTTCT 527
|||||||||||||||||||||||| |||||||||||||| || ||||| ||||| || ||
Sbjct 371 CCGTCTACATGAGCTGGCAAACAAGAGGAGAATCTCTGTGTCCGGAGCATCAAAACTACT 430
Query 528 TGCTAACATGCTCTATTCATATCGTGGAATGGGACTTTCTGTTGGCACAATGATTGCTGG 587
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 431 TGCGAACATGCTCTATTCATACCGTGGAATGGGACTTTCTGTTGGCACAATGATTGCTGG 490
Query 588 ATGGGATGAAACAGGCCCTGGATTGTACTATGTTGACAACGAAGGAGGACGGCTTAAGGG 647
|||||| ||||| || |||||| | |||||||| |||||||||||||||||||| |||||
Sbjct 491 ATGGGACGAAACTGGTCCTGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGG 550
Query 648 AGACAGATTCTCTGTCGGTTCAGGTTCACCATACGCTTATGGTGTTCTGGACAGCGGATA 707
|||||| || || |||||||| ||||||||||||||||| ||||| ||||||||||| ||
Sbjct 551 AGACAGGTTTTCAGTCGGTTCTGGTTCACCATACGCTTACGGTGTACTGGACAGCGGGTA 610
Query 708 CAAATTCGATATGTCGGTTGAAGAAGCCTCAGAGTTAGCAAGGAGATCCATCTACCATGC 767
||||| ||||||||| ||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 611 CAAATACGATATGTCAGTTGAAGAAGCTTCGGAGTTAGCAAGGAGATCGATCTACCATGC 670
Query 768 TACATTCCGTGATGGAGCTAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGGCC-GCAAG 826
||||||||||||||||| |||||||||||||||||||||||||||||||| || | |||
Sbjct 671 GACATTCCGTGATGGAGCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCCCG-AAG 729
Query 827 GATGGACGAAACTCTCTGGAGACGACGTTGGCGAGCTACATTACCATTATTACCCCGTGG 886
||||||||||||| || ||||| || ||||| |||||||| ||||| || ||||||||||
Sbjct 730 GATGGACGAAACTATCAGGAGATGATGTTGGGGAGCTACACTACCACTACTACCCCGTGG 789
Query 887 CTCCAA-TCACCGCGGAACATGTGATGGA 914
| ||| | | ||| ||||| ||||||||
Sbjct 790 CACCAGCT-ATCGCAGAACAAGTGATGGA 817
> Ahg920173 jgi|Araly1|920173|scaffold_101454.1
Length=440
Score = 414 bits (224), Expect = 6e-115
Identities = 268/290 (92%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 310 GGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATCTCGTCGCAATCT 369
||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 15 GGTGTTATGGTCGCTGCTGATTCTCGGGCTAGCATGGGAGGATATATCTCCTCACAATCT 74
Query 370 GTGAAGAAGATTATTGAAATTAATCCTTATATGCTTGGTACAATGGCTGGTGGTGCTGCT 429
|||||||||||||||||||| |||||||||||||| ||||| |||||||| || |||||
Sbjct 75 GTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTACGATGGCTGGAGGAGCTGCA 134
Query 430 GATTGTCAATTCTGGCACAGAAATCTGGGAATTAAGTGCCGTCTACATGAGCTGGCAAAC 489
||||| ||||| |||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 135 GATTGCCAATTTTGGCACAGAAATCTTGGAATTAAGTGCCGTCTACATGCGCTGGCAAAC 194
Query 490 AAAAGGAGAATCTCTGTTTCAGGAGCTTCAAAGCTTCTTGCTAACATGCTCTATTCATAT 549
|| ||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||
Sbjct 195 AAGAGGAGAATCTCTGTTTCCGGAGCTTCAAAACTTCTTGCGAACATGCTGTATTCATAC 254
Query 550 CGTGGAATGGGACTTTCTGTTGGCACAATGATTGCTGGATGGGATGAAAC 599
|| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 255 CGAGGAATGGGACTTTCTGTTGGCACAATGATTGCTGGATGGGACGAAAC 304
> Ahg911093 jgi|Araly1|911093|Al_scaffold_0001_1347
Length=342
Score = 263 bits (142), Expect = 2e-69
Identities = 261/314 (83%), Gaps = 26/314 (8%)
Strand=Plus/Plus
Query 604 CCTGGATTGTACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGATTCTCTGTC 663
|||||| | ||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 33 CCTGGACTATACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGGTTTTCAGTC 92
Query 664 GGTTCAGGTTCACCATACGCTTATGGTGTTCTGGACAGCGGATACAAATTCGATATGTCG 723
||||| ||||||||||||||||| ||||| ||||||||||| || || |
Sbjct 93 GGTTCTGGTTCACCATACGCTTACGGTGTACTGGACAGCGG-------TT-GA-A----- 138
Query 724 GTTGAAGAAGCCTCAGAGTTAGCAAGGAGATCCATCTACCATGCTACATTCCGTGATGGA 783
| | || | || |||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 139 ---G-A-AA-CTTCGGAGTTAGCGAGGAGATCAATCTACCATGCGACATTCCGTGATGGA 192
Query 784 GCTAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGGCC-GCAAGGATGGACGAAACTCTC 842
|| |||||||||||||||||||||||||||||||| || | |||||||||||||||| ||
Sbjct 193 GCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCCCG-AAGGATGGACGAAACTATC 251
Query 843 TGGAGACGACGTTG-GCGAGCTACATTACCATTATTACCCCGTGGCTCCAA-TCACCGCG 900
||||| || |||| | |||||||| ||||| || ||||||||||| ||| | | |||
Sbjct 252 AGGAGATGATGTTGAG-GAGCTACACTACCACTACTACCCCGTGGCACCAGCT-ATCGCA 309
Query 901 GAACATGTGATGGA 914
||||| ||||||||
Sbjct 310 GAACAAGTGATGGA 323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41477733696
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5