BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26350.1
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484398 jgi|Araly1|484398|fgenesh2_kg.5__390__AT3G26350.1 1415 0.0
> Ahg484398 jgi|Araly1|484398|fgenesh2_kg.5__390__AT3G26350.1
Length=1074
Score = 1415 bits (766), Expect = 0.0
Identities = 984/1086 (91%), Gaps = 27/1086 (2%)
Strand=Plus/Plus
Query 1 ATGTCTCATCATCATCACCATGAAACTAACCCTCATTTTGCGCGAATTCCATCGCAGAAT 60
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 1 ATGTCTCATCATCATCACCATGAAACCAACCCTCATTTCGCCCGAATTCCATCGCAGAAT 60
Query 61 CCACATCTCAAAAGCGGTGGTGCTTCTACCTCACAAACATCTTCGAACCAACCACACATC 120
||||||||| ||| || |||||||||||||||||||||||| || ||||||||| ||||
Sbjct 61 CCACATCTC-AAA--GGCGGTGCTTCTACCTCACAAACATCTCCGCACCAACCACTCATC 117
Query 121 CCGCCCATTCCGCACCCaaaaaaa-TCGCACCACAAAACCACGCAACCTCACCCAGTAGC 179
| ||||||||| || ||||||||| ||||||| ||||| ||||||||||||||||| ||
Sbjct 118 CAGCCCATTCCACA-CCAAAAAAACCCGCACCATAAAACTACGCAACCTCACCCAGTCGC 176
Query 180 TCCACCAGGAATCCTAATCAAGACTCGTGGTCGCCACCGTGAAAATCCAATCCAAGAACC 239
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 177 TCCACCCGGAATCCTAATCAAGACTCGTGGTCGCCACCGTGAAAAACCAATCCAAGAACC 236
Query 240 GAAACATTCTGTAATACCTGTACCATTAAGCCCAGAGGAGAGACTTCCACCACGAAAAAC 299
||||||||||||||||||| |||| || ||| || | ||| || |||| ||||||
Sbjct 237 GAAACATTCTGTAATACCTTTACC------CCGAGAAGATAAACTACCGCCACAAAAAAC 290
Query 300 TCAAAACTCAT-CGAAAAGACCATTGCTATTAAGCCCT-GAAGATAATC-A-A-CAACAA 354
|| |||||| | || |||||||||||| |||||| ||| |||||| ||| | | ||||||
Sbjct 291 TCCAAACTC-TACGGAAAGACCATTGCCATTAAG-CCTCGAAGATCATCAACATCAACAA 348
Query 355 CGAC--C-TC--C-AC---CACCACAAGCACCACAACGCAACGGAGGGGGTTATGGATCA 405
| || | | | || ||| | | |||||||||||| | |||| ||||||||||||
Sbjct 349 CTACAACAACAACAACAAAGACCTCCACCACCACAACGCAGCAGAGGCGGTTATGGATCA 408
Query 406 ACATTACCTCCAATACCCAAACCAAGTCCATGGAGAACCGCTCCAACACCATCCCCGCAT 465
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 409 ACATTACCTCCAATACCCAAACCAAGTCCATGGAGAACCGCTCCAACTCCATCCCCACAT 468
Query 466 CACCGCCGTGGCCCACGGTTACCACCACCCTCAAGAGAGACAAACGCAATGACATGGTCA 525
||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 469 CACCGTGGTGGCCCACGGTTACTGCCGCCCTCAAGAGAGACAAACGCAATGACATGGTCA 528
Query 526 GCTGCATTTTGCTGTGCAATATTCTGGGTCATTCTTATTCTCGGCGGTCTTATCATCCTA 585
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 529 GCTGCATTTTGTTGTGCAATATTCTGGGTCATTCTTATTCTCGGCGGTCTTATTATCCTA 588
Query 586 ATCGTTTACCTCGTCTACCGTCCTCGCTCACCTTACGTCGACATCTCAGCTGCTAACCTA 645
|||||||||||||| || ||||||||||| |||||| | |||||||||||||||||||||
Sbjct 589 ATCGTTTACCTCGTGTATCGTCCTCGCTCTCCTTACATGGACATCTCAGCTGCTAACCTA 648
Query 646 AACGCTGCTTATCTCGACATGGGTTTTCTTCTAAACGGTGATCTAACCATTTTAGCAAAC 705
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 649 AACGCTGCTTATCTCGACATGGGGTTTCTTCTAAACGGTGATCTAACCATTTTAGCAAAC 708
Query 706 GTCACAAACCCAAGCAAGAAAAGTAGTGTGGAGTTTAGCTATGTGACATTCGAGCTTTAC 765
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 709 GTCACAAACCCAAGCAAGAAAAGCAGTGTGGAGTTTAGCTATGTGACGTTCGAGCTTTAC 768
Query 766 TATTACAACACACTCATAGCAACTCAATACATTGAACCTTTCAAGGTTCCTAAGAAAACG 825
|||||||| ||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 769 TATTACAATACACTCATAGCGACTCAATACATTGAACCTTTTAATGTTCCTAAGAAAACG 828
Query 826 TCAATGTTTGCGAATGTTCATCTTGTGAGCAGTCAGGTCCAGCTTCAGGCAACGCAGAGC 885
|| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 829 TCGATGTTTGCGAGTGTTCATCTTGTGAGCAGTCAGGTCCAGCTTCAGCCAACGCAGAGT 888
Query 886 CGGGAGCTGCAGCGTCAGATTGAAACAGGTCCGGTTTTGTTGAACCTGAGAGGAATGTTT 945
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 889 CGGGAGCTGCAGCGTCAGATTGAAACCGGTCCGGTTTTGTTGAACCTCAGAGGAACGTTT 948
Query 946 CATGCACGTTCGCATATAGGACCATTGTTTAGGTACTCTTATAAGTTGCATACTCATTGC 1005
|||||||||||| || | |||||||||||||| ||||||||| ||||||||||||||||
Sbjct 949 CATGCACGTTCGTATTTTGGACCATTGTTTAGATACTCTTATTGGTTGCATACTCATTGC 1008
Query 1006 AGCGTTTCATTGAATGGTCCTCCTTTAGGAGCTATGCGAGCTAGAAGATGCAATACCAAA 1065
|| |||||||||||| ||||||||| |||||||||||| |||| ||||||||||||||||
Sbjct 1009 AGTGTTTCATTGAATAGTCCTCCTTCAGGAGCTATGCGCGCTAAAAGATGCAATACCAAA 1068
Query 1066 CGCTAG 1071
||||||
Sbjct 1069 CGCTAG 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39876571182
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5