BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26350.1 Length=1071 Score E Sequences producing significant alignments: (Bits) Value Ahg484398 jgi|Araly1|484398|fgenesh2_kg.5__390__AT3G26350.1 1415 0.0 > Ahg484398 jgi|Araly1|484398|fgenesh2_kg.5__390__AT3G26350.1 Length=1074 Score = 1415 bits (766), Expect = 0.0 Identities = 984/1086 (91%), Gaps = 27/1086 (2%) Strand=Plus/Plus Query 1 ATGTCTCATCATCATCACCATGAAACTAACCCTCATTTTGCGCGAATTCCATCGCAGAAT 60 |||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| Sbjct 1 ATGTCTCATCATCATCACCATGAAACCAACCCTCATTTCGCCCGAATTCCATCGCAGAAT 60 Query 61 CCACATCTCAAAAGCGGTGGTGCTTCTACCTCACAAACATCTTCGAACCAACCACACATC 120 ||||||||| ||| || |||||||||||||||||||||||| || ||||||||| |||| Sbjct 61 CCACATCTC-AAA--GGCGGTGCTTCTACCTCACAAACATCTCCGCACCAACCACTCATC 117 Query 121 CCGCCCATTCCGCACCCaaaaaaa-TCGCACCACAAAACCACGCAACCTCACCCAGTAGC 179 | ||||||||| || ||||||||| ||||||| ||||| ||||||||||||||||| || Sbjct 118 CAGCCCATTCCACA-CCAAAAAAACCCGCACCATAAAACTACGCAACCTCACCCAGTCGC 176 Query 180 TCCACCAGGAATCCTAATCAAGACTCGTGGTCGCCACCGTGAAAATCCAATCCAAGAACC 239 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 177 TCCACCCGGAATCCTAATCAAGACTCGTGGTCGCCACCGTGAAAAACCAATCCAAGAACC 236 Query 240 GAAACATTCTGTAATACCTGTACCATTAAGCCCAGAGGAGAGACTTCCACCACGAAAAAC 299 ||||||||||||||||||| |||| || ||| || | ||| || |||| |||||| Sbjct 237 GAAACATTCTGTAATACCTTTACC------CCGAGAAGATAAACTACCGCCACAAAAAAC 290 Query 300 TCAAAACTCAT-CGAAAAGACCATTGCTATTAAGCCCT-GAAGATAATC-A-A-CAACAA 354 || |||||| | || |||||||||||| |||||| ||| |||||| ||| | | |||||| Sbjct 291 TCCAAACTC-TACGGAAAGACCATTGCCATTAAG-CCTCGAAGATCATCAACATCAACAA 348 Query 355 CGAC--C-TC--C-AC---CACCACAAGCACCACAACGCAACGGAGGGGGTTATGGATCA 405 | || | | | || ||| | | |||||||||||| | |||| |||||||||||| Sbjct 349 CTACAACAACAACAACAAAGACCTCCACCACCACAACGCAGCAGAGGCGGTTATGGATCA 408 Query 406 ACATTACCTCCAATACCCAAACCAAGTCCATGGAGAACCGCTCCAACACCATCCCCGCAT 465 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 409 ACATTACCTCCAATACCCAAACCAAGTCCATGGAGAACCGCTCCAACTCCATCCCCACAT 468 Query 466 CACCGCCGTGGCCCACGGTTACCACCACCCTCAAGAGAGACAAACGCAATGACATGGTCA 525 ||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 469 CACCGTGGTGGCCCACGGTTACTGCCGCCCTCAAGAGAGACAAACGCAATGACATGGTCA 528 Query 526 GCTGCATTTTGCTGTGCAATATTCTGGGTCATTCTTATTCTCGGCGGTCTTATCATCCTA 585 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 529 GCTGCATTTTGTTGTGCAATATTCTGGGTCATTCTTATTCTCGGCGGTCTTATTATCCTA 588 Query 586 ATCGTTTACCTCGTCTACCGTCCTCGCTCACCTTACGTCGACATCTCAGCTGCTAACCTA 645 |||||||||||||| || ||||||||||| |||||| | ||||||||||||||||||||| Sbjct 589 ATCGTTTACCTCGTGTATCGTCCTCGCTCTCCTTACATGGACATCTCAGCTGCTAACCTA 648 Query 646 AACGCTGCTTATCTCGACATGGGTTTTCTTCTAAACGGTGATCTAACCATTTTAGCAAAC 705 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 649 AACGCTGCTTATCTCGACATGGGGTTTCTTCTAAACGGTGATCTAACCATTTTAGCAAAC 708 Query 706 GTCACAAACCCAAGCAAGAAAAGTAGTGTGGAGTTTAGCTATGTGACATTCGAGCTTTAC 765 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 709 GTCACAAACCCAAGCAAGAAAAGCAGTGTGGAGTTTAGCTATGTGACGTTCGAGCTTTAC 768 Query 766 TATTACAACACACTCATAGCAACTCAATACATTGAACCTTTCAAGGTTCCTAAGAAAACG 825 |||||||| ||||||||||| |||||||||||||||||||| || ||||||||||||||| Sbjct 769 TATTACAATACACTCATAGCGACTCAATACATTGAACCTTTTAATGTTCCTAAGAAAACG 828 Query 826 TCAATGTTTGCGAATGTTCATCTTGTGAGCAGTCAGGTCCAGCTTCAGGCAACGCAGAGC 885 || |||||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 829 TCGATGTTTGCGAGTGTTCATCTTGTGAGCAGTCAGGTCCAGCTTCAGCCAACGCAGAGT 888 Query 886 CGGGAGCTGCAGCGTCAGATTGAAACAGGTCCGGTTTTGTTGAACCTGAGAGGAATGTTT 945 |||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| Sbjct 889 CGGGAGCTGCAGCGTCAGATTGAAACCGGTCCGGTTTTGTTGAACCTCAGAGGAACGTTT 948 Query 946 CATGCACGTTCGCATATAGGACCATTGTTTAGGTACTCTTATAAGTTGCATACTCATTGC 1005 |||||||||||| || | |||||||||||||| ||||||||| |||||||||||||||| Sbjct 949 CATGCACGTTCGTATTTTGGACCATTGTTTAGATACTCTTATTGGTTGCATACTCATTGC 1008 Query 1006 AGCGTTTCATTGAATGGTCCTCCTTTAGGAGCTATGCGAGCTAGAAGATGCAATACCAAA 1065 || |||||||||||| ||||||||| |||||||||||| |||| |||||||||||||||| Sbjct 1009 AGTGTTTCATTGAATAGTCCTCCTTCAGGAGCTATGCGCGCTAAAAGATGCAATACCAAA 1068 Query 1066 CGCTAG 1071 |||||| Sbjct 1069 CGCTAG 1074 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39876571182 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5