BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G26360.1

Length=712
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484399 jgi|Araly1|484399|fgenesh2_kg.5__391__AT3G26360.1          424    6e-118


> Ahg484399 jgi|Araly1|484399|fgenesh2_kg.5__391__AT3G26360.1
Length=546

 Score =  424 bits (229),  Expect = 6e-118
 Identities = 288/315 (91%), Gaps = 10/315 (3%)
 Strand=Plus/Plus

Query  101  ATGAACACGATAGCGAAGCGAGTTACGGGGTTGGTGACTCGTCCGAGTCTAAACCAGCAG  160
            |||||||||||||||||||||||||| || || ||||  | | || |    ||||| |||
Sbjct  1    ATGAACACGATAGCGAAGCGAGTTACAGGATTTGTGA--C-T-CG-G----AACCACCAG  51

Query  161  TTGCAGCAAGAGCGAGGGATAAGAGTGAAGGTGTTCTCCAATGATTTAGACAAGGCACTG  220
            |||||||| |||||||||||||||||||||||||| ||||||||| | ||||| ||| ||
Sbjct  52   TTGCAGCAGGAGCGAGGGATAAGAGTGAAGGTGTTTTCCAATGATCTGGACAAAGCATTG  111

Query  221  ACGATTTTGCAGAAGAAGATGCAATCGAGTGGAATGGAGAGGCTGATCAAAGGGACTCAG  280
            |||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct  112  ACGATTTTGCAGAAGAAGATGCAATCTAGTGGAATGGAGAGACTTATCAAAGGGACTCAG  171

Query  281  ACTCATCACATTAAGAATTCGGAGAAGAAGGTTCTCGCTAGGAAGAATCTTGAACGCAGA  340
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  172  ACTCATCACATTAAGAATTCAGAGAAGAAGGTTCTCGCTAGGAAGAATCTTGAACGCAGA  231

Query  341  ATCAAATCCATTGACTTTGCTCGAAAACTCCAATCAATCCTCATCAAGAAAGTCAG-AGG  399
            |||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct  232  ATCAAATCTATTGACTTTGCTCGCAAACTTCAATCAATCCTCATCAAGAAAGTCAGGAGG  291

Query  400  TTTATGAGAGCTGAG  414
            |||||||||||||||
Sbjct  292  TTTATGAGAGCTGAG  306


 Score = 58.4 bits (31),  Expect = 7e-08
 Identities = 31/31 (100%), Gaps = 0/31 (0%)
 Strand=Plus/Plus

Query  535  AGTTGTTTACTCTATGGCTTCTCTTTCGTAA  565
            |||||||||||||||||||||||||||||||
Sbjct  305  AGTTGTTTACTCTATGGCTTCTCTTTCGTAA  335



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26190443979


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5