BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26370.1
Length=2010
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484400 jgi|Araly1|484400|fgenesh2_kg.5__392__AT3G26370.1 3081 0.0
> Ahg484400 jgi|Araly1|484400|fgenesh2_kg.5__392__AT3G26370.1
Length=1952
Score = 3081 bits (1668), Expect = 0.0
Identities = 1848/1932 (96%), Gaps = 24/1932 (1%)
Strand=Plus/Plus
Query 80 AGAGGAAGAAAAGGAAGAGAGGATATAGAAATTAAGCTGGCGACTTTTAGTCCGAGGCGA 139
||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 40 AGAAGAAGAAAAGGAAGAGAGAATATAGATATTAAGCTGGCGACTTTTAGTCCGAGGCGA 99
Query 140 GCAATGGCAGAGTTACGGCACTCGAGCTCTCTCGGTAGCCGATCTTCTTCTTCTCCGTTA 199
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 GCAATGGCTGAGTTACGGCACTCGAGCTCTCTCGGTAGCCGATCTTCTTCTTCTCCGTTA 159
Query 200 CGTGCCGCCGGAGATGAGGATTCTTCATCGCCTCATGTACACGATCACTCTCCTAACGGC 259
||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 160 CGT---GCCGGAGATGAGGACTCTTCATCGCCTCACGTACACGATCACTCACCTAACGGC 216
Query 260 GGAGACGACGAAGATGGTCGCCCACGTCATCCTTCTAGAGATCGAGACCGTCCGATCTGG 319
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 217 GGAGACGACGAAGATGGTCGACCACGTCATCCTTCAAGAGATCGAGACCGTCCGATCTGG 276
Query 320 TTTCACTCTTTGTTTCCTTTCTTCGGTGATGATCCTAGGGTTTCTCCTCAGAAGAATAAA 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TTTCACTCTTTGTTTCCTTTCTTCGGTGATGATCCTAGGGTTTCTCCTCAGAAGAATAAA 336
Query 380 ATCTCGCTTCTATTGATTTTGATTCTCGCTATTGCTAGCTTGATCTCAGTTTATGGGATT 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 ATCTCGCTTCTATTGATTTTGATTCTCGCTATTGCTAGCTTGATCTCAGTTTATGGGATT 396
Query 440 ATTAATCACTTGAATGCTCCTTATTTATGTAAAAAAGATGGGATTGTGCTAAACTGTCCT 499
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 397 ATTAATCACTTGAATGCTCCATATTTGTGTAAAAAAGATGGGATTGTGCTTAACTGTCCT 456
Query 500 CATGTAAAAGAGTCACCTTCTCCTTGGGAGAATCCTTTATCTGCAACAACTTCTTGGAAG 559
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 457 CATGTAAAAGAGTCTCCTTCTCCATGGGAAAATCCTTTATCTGCAACAACTTCTTGGAAG 516
Query 560 CCTTGTGCTGAGCGGCGGATTGGTGGAATCTCAGATCTTCCTCCTGAGAATGAAACAAAT 619
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 517 CCTTGTGCTGAGCGGCGGGTTGGTGGAATCTCAGATCTTCCTCCTGAGAACGAAACAAAT 576
Query 620 GGCTATGTATTCATTCATGCTGAAGGTGGTTTGAATCAGCAGCGAATTGCTATCTGCAAC 679
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 GGCTATGTATTCATTCATGCTGAAGGTGGTTTGAATCAGCAGCGAATTGCTATCTGCAAT 636
Query 680 GCAGTAGCTGTTGCCAAGATTATGAATGCAACACTGATTCTACCAGTACTGAAGCAGGAC 739
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GCAGTAGCTGTTGCTAAGATTATGAATGCAACACTGATTCTACCAGTACTGAAGCAGGAC 696
Query 740 CAAATATGGAAAGACACAACAAAATTTGAAGACATTTTTGATGTAGATCATTTCATTGAT 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 CAAATATGGAAAGACACAACAAAATTTGAAGACATTTTTGATGTAGATCATTTCATTGAT 756
Query 800 TACTTGAAGGATGATGTCCGAATTGTTCGAGACATACCTGACTGGTTCACTGACAAAGCA 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 TACTTGAAGGATGATGTCCGAATTGTTCGAGACATACCTGACTGGTTCACTGACAAAGCA 816
Query 860 GAGCTATTCTCTAGTATAAGAAGAACAGTCAAAAACATTCCCAAATATGCAGCAGCCCAA 919
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 GAGCTATTCTCCAGCATAAGAAGAACAGTCAAAAACATTCCCAAATATGCAGCAGCCCAA 876
Query 920 TTTTATATTGACAATGTTTTACCTCGGATAAAGGAGAAGAAGATAATGGCCTTGAAGCCT 979
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 877 TTTTATATAGACAATGTTTTACCTCGTATAAAGGAGAAGAAGATAATGGCCTTGAAGCCT 936
Query 980 TTTGTCGATCGACTTGGGTATGACAATGTACCTCAAGAAATCAACAGATTACGATGCCGT 1039
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 937 TTTGTCGATCGACTTGGGTACGACAATGTACCTCAAGAAATCAACAGATTACGATGCCGT 996
Query 1040 GTAAATTATCATGCTCTCAAATTTCTTCCAGAGATAGAGCAGATGGCTGATTCACTTGTT 1099
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 997 GTAAATTATCATGCTCTCAAATTTCTCCCAGAGATAGAGCAGATGGCTGACTCACTTGTT 1056
Query 1100 TCTAGAATGAGAAATCGCACTGGAAATCCAAATCCATATATGGCTCTTCATCTTAGATTC 1159
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 1057 TCTAGAATGAGAAATCGCACTGGCAATCCGAATCCGTATATGGCTCTTCATCTTAGATTC 1116
Query 1160 GAGAAAGGAATGGTTGGTCTATCGTTCTGTGATTTTGTGGGGACAAGGGAAGAGAAAGTT 1219
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1117 GAGAAAGGAATGGTTGGTTTATCGTTCTGTGATTTCGTGGGGACAAGGGAAGAGAAAGTT 1176
Query 1220 AAAATGGCAGAATACAGACAAAAGGAATGGCCTCGGCGTTTCAAGAATGGTTCCCATCTC 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 AAAATGGCAGAATACAGACAAAAGGAATGGCCTCGGCGTTTCAAGAATGGTTCCCATCTC 1236
Query 1280 TGGCAGCTCGCCTTGCAGAAGCGCAAAGAAGGTCGATGCCCTCTTGAGCCAGGAGAAGTT 1339
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1237 TGGCAGCTCGCTTTGCAAAAGCGCAAAGAAGGCCGATGCCCTCTTGAGCCAGGAGAAGTT 1296
Query 1340 GCTGTGATCCTACGTGCAATGGGCTATCCAAAAGAAACACAAATCTATGTTGCATCTGGT 1399
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1297 GCTGTGATCCTACGGGCAATGGGTTATCCAAAAGAAACACAAATCTATGTAGCATCTGGT 1356
Query 1400 CAAGTCTATGGCGGTCAAAACCGTATGGCTCCACTAAGAAACATGTTCCCAAATTTGGTA 1459
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 CAAGTCTATGGCGGCCAAAACCGTATGGCTCCACTAAGAAACATGTTCCCAAATTTGGTA 1416
Query 1460 ACAAAGGAGGATTTAGCAGGCAAAGAGGAACTAACAACGTTTAGAAAACACGTTACAAGT 1519
|||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1417 ACAAAGGAGGATCTAGCAGGCAAAGAGGAACTAACAACTTTTAGAAAACACGTAACAAGC 1476
Query 1520 CTTGCGGCTCTAGATTTCTTGGTGTGCTTGAAATCAGATGTATTTGTGATGACACACGGT 1579
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1477 CTCGCGGCTCTAGATTTCTTGGTCTGCTTGAAATCAGATGTATTTGTGATGACACACGGT 1536
Query 1580 GGAAACTTTGCAAAACTGATCATCGGAGCGCGTAGATATATGGGGCATCGCCAGAAATCA 1639
||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||
Sbjct 1537 GGAAACTTTGCAAAACTGATCATCGGAGCACGTAGATATATGGGTCATCGGCAAAAATCA 1596
Query 1640 ATCAAACCGGATAAAGGGTTGATGTCGAAATCATTTGGGGATCCTTACATGGGATGGGCA 1699
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1597 ATCAAACCGGATAAAGGTTTGATGTCGAAATCATTCGGGGATCCTTACATGGGATGGGCA 1656
Query 1700 ACTTTTGTGGAAGATGTAGTTGTAACCCATCAAACACGAACCGGTTTACCTGAAGAAACT 1759
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1657 ACTTTTGTGGAAGATGTAGTTGTAACCCATCAAACACGAACCGGTTTACCCGAAGAAACT 1716
Query 1760 TTCCCTAACTATGATCTTTGGGAAAATCCTCTCACTCCATGCATGTGTAAAGCTTGATGA 1819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 TTCCCTAACTATGATCTTTGGGAAAATCCTCTCACTCCATGCATGTGTAAAGCTTGATGA 1776
Query 1820 TGATGCTTTTGTTTGGTCTTGGATTTTGTCTGATGAGGAGCAACAAA-CTATAGAGATTC 1878
|| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1777 TGCTGCTTTTGTTTCGTCTTGGATTTTGTCTGATGAGGAGCTACAAAACTATAGAGATTC 1836
Query 1879 GTAGTTttcttcttcttcttcttcttttttgacctttcaaatctttgaagtcttcat--- 1935
|||||||| || ||||| | ||| || ||||||||||||||||| |
Sbjct 1837 GTAGTTTT-TT-TTCTT-TAA--CTT------CC----AAATCTTTGAAGTCTTCTTCAC 1881
Query 1936 ttaccatctttGTAATCATTTTGATATTATGTAAAGTTCCTAGTGATGaaaaaaaaG-TT 1994
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 1882 TTACCATCTTTGTAATCATTTTGACATTATGTAAAGTTCCTAGTGAAGAAAAAAAAGGTT 1941
Query 1995 TCTTTTTTATAT 2006
| |||||| |||
Sbjct 1942 TTTTTTTT-TAT 1952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75571046080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5