BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26380.1
Length=2172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484401 jgi|Araly1|484401|fgenesh2_kg.5__393__AT3G26380.1 3192 0.0
> Ahg484401 jgi|Araly1|484401|fgenesh2_kg.5__393__AT3G26380.1
Length=2118
Score = 3192 bits (1728), Expect = 0.0
Identities = 1991/2118 (94%), Gaps = 18/2118 (1%)
Strand=Plus/Plus
Query 1 CTCTCTTACTCTCAGGTTCTCAACAACAAAAGAGGAAAACAAAATCAGAAGCTATCGTAA 60
|||||| ||||||||||||||||||||| |||||| |||||||||||||||| |||||||
Sbjct 1 CTCTCTCACTCTCAGGTTCTCAACAACATAAGAGGCAAACAAAATCAGAAGCCATCGTAA 60
Query 61 TCAGTTCTCATCTCTATGACCGGACTATCCGTAGAGAAAACCGGGTCGACCCGGTCCACT 120
|||| ||||||| |||||||||||| ||||||||||||||||||||||||| ||| || |
Sbjct 61 TCAGGTCTCATCGCTATGACCGGACCATCCGTAGAGAAAACCGGGTCGACCGGGTTCATT 120
Query 121 GTCTTCTTCATCATCTTTAATCTATCCATTTTTAGTTTATCGATTGAAGCAAGGTCGAGG 180
|||| ||||||| || | ||||| |||||||||||||||||||||| ||||| |||||
Sbjct 121 GTCTGCTTCATCGTCCTCAATCTTTCCATTTTTAGTTTATCGATTGGCGCAAGATCGAGC 180
Query 181 CAACAACATGCTAGCTTTCCTCCAAGAGGATGGAATTCGTACGATTCCTTTTGTTGGACT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAACAACATGCTAGCTTTCCTCCAAGAGGATGGAATTCGTACGATTCCTTTTGTTGGACT 240
Query 241 ATCTCTGAAGCTGAGTTCTTGCAGAGTGCTGAAATTGTTTCTAAGCGTCTTCTTCCTCAT 300
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 241 ATCTCTGAAGCTGAGTTCTTGCAAAGCGCTGAAATTGTTTCTAAGCGTCTTCTTCCTCAT 300
Query 301 GGTTATCAGTATGTTGTGGTGGATTACCTTTGGTATAGAAAGAAAGTTGAAGGAGCTTAT 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GGTTATCAGTATGTTGTGGTGGATTATCTTTGGTATAGAAAGAAAGTTGAAGGAGCTTAT 360
Query 361 GTGGATTCTCTTGGGTTTGATGTGATTGATGAATGGGGAAGATTGCATCCTGATCCAGGT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 GTGGATTCTCTTGGGTTTGATGTGATTGATGAATGGGGAAGATTGCATCCTGATCCAGCT 420
Query 421 AGATGGCCATCTTCTAGAGGCGGTAAAGGTTTCACTGAAGTTGCTGAGAAAGTTCATAGA 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 AGATGGCCATCTTCTAGAGGCGGTAAAGGTTTCACTGAAGTTGCGGAGAAAGTTCATAGA 480
Query 481 ATGGGTTTGAAGTTTGGGATTCATGTTATGGGAGGAATCAGCACACAAGCTTATAACGCA 540
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 481 ATGGGTTTGAAGTTTGGGATTCATGTTATGGGAGGGATAAGCACACAAGCTTATAACGCT 540
Query 541 AATAGTCTCGTTATGGATAGTGTTAAGGGAGGTGCTTATGAAGAATCAGGTAGACAGTGG 600
|||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 AATACTCTTGTTATGGATAGTGTTAAGGGAGGTGCTTATGAAGAATCAGGTAGGCAGTGG 600
Query 601 CGAGCGAAAGATATTGGGATCAAGGAGAGGGCTTGTGTTTGGATGTCGCATGGGTTCATG 660
|||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct 601 CGAGCGAAAGATATTGGGATCAAGGAGAAGGCTTGTGTGTGGATGTCACATGGGTTCATG 660
Query 661 AGTGTGAATACCAAGTTAGGTGCAGGAAAAGCATTCTTGAGGTCTCTTTATCGTCAATAT 720
||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 661 AGTGTAAATACCAAGTTAGGTGCAGGAAAAGCTTTCTTGAGGTCTCTTTATCGACAATAT 720
Query 721 GCAGAATGGGGCGTTGATTTCATAAAACATGACTGCGTATTTGGCACTGACTTCAATATA 780
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCGGAATGGGGCATTGATTTCATAAAACATGACTGCGTATTTGGCACTGACTTCAATATA 780
Query 781 GAGGAGATAACTTATGTGTCAGAGGTTCTAAAGGAGCTTGATCGGCCTGTTTTGTACTCC 840
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 781 GAGGAAATAACTTATGTGTCAGAGGTTCTGAAGGAGCTTGATCGGCCTGTTTTGTATTCC 840
Query 841 ATATCTCCAGGGACGAGTGTGACACCTACAATGGCTAAAGAAGTTAGCCAATTGGTTAAC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATATCTCCAGGGACGAGTGTGACACCTACAATGGCTAAAGAAGTTAGCCAATTGGTTAAC 900
Query 901 ATGTATAGAATAACGGGTGATGATTGGGACACATGGAAAGATGTCACGGCACATTTTGAT 960
||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 901 ATGTACAGAATAACAGGTGATGATTGGGATACATGGAAAGATGTGGCGGCACATTTTGAT 960
Query 961 ATCTCGAGAGATTTATCTGCTTCTAGTATGATTGGTGCACGAGGGTTACAAGGAAAATCA 1020
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 961 ATCTCGAGAGATTTATCTGCTTCTAGTATGATCGGTGCACGAGGGTTACAAGGAAAATCA 1020
Query 1021 TGGCCTGATCTAGATATGTTACCTCTTGGATGGCTTACTGATCAAGGTTCAAATGTTGGA 1080
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1021 TGGCCTGATCTAGATATGTTACCTCTTGGATGGCTTACTGATCAAGGTTCGAATTTTGGA 1080
Query 1081 CCTCATCGAGCGTGTAATCTAAATCTTGAAGAACAGAAGTCACAGATGACATTGTGGTCC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CCTCATCGAGCGTGTAATCTAAATCTTGAAGAACAGAAGTCACAGATGACATTGTGGTCC 1140
Query 1141 ATCGCAAAGTCCCCTCTCATGTTTGGAGGTGATGTGAGAAATCTCGATGCCACTACTTAT 1200
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1141 ATCGCAAAGTCCCCTCTCATGTTTGGAGGTGATGTGAGAAAGCTCGATGACACTACTTAT 1200
Query 1201 AATCTGATCACAAATCCTACACTGCTGGAAATAAACTCTTATAGCTCTAACAACAAGGAG 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AATCTGATCACAAATCCTACACTGCTGGAAATAAACTCTTATAGCTCTAACAACAAGGAG 1260
Query 1261 TTTCCTTACATCACCGCGACAAGAGTTTCTAGGAATAAGCACAAAGGCTATCCTCATCAT 1320
|||||||||||||||| ||||||||| |||||||||||||||||| || |||||||||||
Sbjct 1261 TTTCCTTACATCACCGTGACAAGAGTATCTAGGAATAAGCACAAAAGCCATCCTCATCAT 1320
Query 1321 CCAACGGGCAAGAACATTTCAACTAAGCATGCTTTTGGTCTCACTAGCTGCAAAGAACAA 1380
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1321 CCAACGGGCAACAACATTTCAACTAAACATGCTTTTGGTCTCACTAGCTGCAAAGAACCG 1380
Query 1381 AAAGCCAACACTTGGTTCATTGTAGACAAGAACCGTGGACAAATTTGTTGGAACCAACAC 1440
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||| | ||
Sbjct 1381 AAAGCCAACACTTGGTCCATTGTAGACAAGAACCGTGGACAAATCTGTTGGAACCGATAC 1440
Query 1441 TCTAGTGAAAAATTAGAGAAGCCATTTTGCTTATACAACAGAAAAGCTCTTCTAGC-T-- 1497
||||| ||||| |||||||||| |||||||||||||||||||||||||||| ||| |
Sbjct 1441 TCTAGCCAAAAACTAGAGAAGCCCTTTTGCTTATACAACAGAAAAGCTCTTCCAGCGTCG 1500
Query 1498 T------C---CGATAAGAAGTTAAAACACAACCAGCTTTACCAAGGTAAGCTTCATTTG 1548
| | |||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TATGATTCTTTCGATGAGGAGATAAAACACAACCAGCTTTACCAAGGTAAGCTTCATTTG 1560
Query 1549 CATACAAATGATAAAGCACAGTCTTGTTTAGCAGCTTCCTCGCAGCAAAAGCTCACTTCG 1608
|| |||||||| |||||| |||||||||||| ||||||||| ||||||||||||||||
Sbjct 1561 CAAACAAATGAAAAAGCAGAGTCTTGTTTAGGAGCTTCCTCAAAGCAAAAGCTCACTTCT 1620
Query 1609 AAAGATTATAGTCAAGGTGCTTTATCACCTTGCAAACTAGATGCAAACCAGATGTGGGAG 1668
||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1621 AAAGATTATAGTCGTGGTACTTTATCACCTTGCCAACTAGATGCAAACCAGATGTGGGAG 1680
Query 1669 CTCCACAGTAATGGAACACTGGAAAACAGTTATTCCGGTCTTTGCGCTGTGTTAAATCCA 1728
|||||||||||||||||| |||| || |||||||||||||||||||| ||||||||||||
Sbjct 1681 CTCCACAGTAATGGAACATTGGAGAATAGTTATTCCGGTCTTTGCGCCGTGTTAAATCCA 1740
Query 1729 GTGAAAGCAGCCGAAGCTAGCTCCAATGGCGTTCGTTCTTGGATTGCCACGGGAAGAAGA 1788
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1741 GTGAAAGCAGCCGAAGCTACCTCAAATGGCGTTCGTTCTTGGATTGCCACGGGAAGAAGA 1800
Query 1789 GGAGAAGTATACGTTGCGTTTTTCAACTTAAATCAGGAGAAGACAAAGATATCAGCCAAG 1848
|||||||||||| |||||||||||||||||||| |||||||||||| ||||||| |||||
Sbjct 1801 GGAGAAGTATACATTGCGTTTTTCAACTTAAATGAGGAGAAGACAACGATATCAACCAAG 1860
Query 1849 ATATCTGACATTGCCACGGCTCTTAGAGGCAAGAAGAATCTTGTAGGAGCTTCGTGTACG 1908
||| | |||||||| | |||||| | |||||| ||||||| |||||||||||||||
Sbjct 1861 ATAACAGACATTGCAAAAGCTCTTCCAAACAAGAAAAATCTTGAAGGAGCTTCGTGTACA 1920
Query 1909 AGCCACGAGCTATGGAGCGGCAAAGATTTCGGACCAACAAAAGATTCAGTATCGATTCAA 1968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 AGCCACGAGCTATGGAGCGGCAAAGATTTCGGACCAACAAAAGATTCAGTATCGATTCAA 1980
Query 1969 GTCGAACCTCATGGTCCTGCTCTGTTTGTTCTTCATTGTAGCAACGCCTGACTATATCAG 2028
|||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 1981 GTCGAACCTCATGGTCCTGCTCTGTTTGTTCTTCATTGTAGCCATGCCTAACTATATCAG 2040
Query 2029 ATCAACAGGCATTTCTTTTACCTTCTC-A--CGTC-T-TTT-CTCATCGTAGTAATGTTT 2082
|||||||||| |||||||||||||||| | |||| | ||| ||||||||||||||||||
Sbjct 2041 ATCAACAGGCTTTTCTTTTACCTTCTCCATACGTCGTCTTTTCTCATCGTAGTAATGTTT 2100
Query 2083 CATCTTTAGTCTATAAAA 2100
|||||||||||||| |||
Sbjct 2101 CATCTTTAGTCTATGAAA 2118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81741665770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5