BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26400.1
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484402 jgi|Araly1|484402|fgenesh2_kg.5__394__AT3G26400.1 2540 0.0
Ahg920166 jgi|Araly1|920166|scaffold_101447.1 588 5e-167
> Ahg484402 jgi|Araly1|484402|fgenesh2_kg.5__394__AT3G26400.1
Length=1666
Score = 2540 bits (1375), Expect = 0.0
Identities = 1593/1692 (94%), Gaps = 39/1692 (2%)
Strand=Plus/Plus
Query 1 ATGTCGAAAGCTTGGGGTGGAATTGGAATTGGAGCTTGGGCTGATGAAGCAGAGCGTGCC 60
||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCGAAACCTTGGGGTGGAATTGGAATTGGGGCTTGGGCTGATGAAGCAGAGCGTGCC 60
Query 61 GATGAAGAACAAGCGGCGGAAGCTACTGCTGCGACGGCGGATACACAGAGTTTTCCTAGC 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATGAAGAGCAAGCGGCGGAAGCTACTGCTGCGACGGCGGATACACAGAGTTTTCCTAGC 120
Query 121 CTGAGAGAGGCTGCTGCTGCGACTGCGACTAGTGGTAAGTCTAGGAAGATGAAGAAGATG 180
|||||||| | |||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct 121 CTGAGAGA-G--GCTGCTGCGACTGCTACTAATGCTAAGTCTAGGAAGATGAAGAAGATG 177
Query 181 AGTTTATCTGAGTTTACTACAGGTGCTTATACAGCACCTGGAGGTAGAAACTCTGTTGGA 240
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 178 AGTTTATCTGAGTTTACTACAGGTTCTTATACAGCACCTGGCGGTAGAAACTCTGTTGGA 237
Query 241 TTGACTCAGCAAGAGATTCTTCAATTACCTACTGGTCCTAGACAACGTTCCGAGGAGGAA 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 238 TTGACTCAGCAAGAGATTCTTCAATTACCTACTGGTCCTAGACAACGTTCTGAGGAGGAA 297
Query 301 ATGCAACCTGGTCGTTTAGGCGGTGGGTTTTCATCTTATGGTGGTCGTTCTGGTGGAAGA 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATGCAACCTGGTCGATTAGGCGGTGGGTTTTCATCTTATGGTGGTCGTTCTGGTGGAAGA 357
Query 361 ATTGGGAGAGATCGAGATGATTCTGATGGCTCTTGGAgtggtggtggtggtggtggtggA 420
|| |||||||||||||||||||||||||| || | ||| |||||||||||||| |||
Sbjct 358 ATGGGGAGAGATCGAGATGATTCTGATGGGTC-T----TGG-GGTGGTGGTGGTGGAGGA 411
Query 421 AGGAGACCTTATGGTGGTGGATTTGATGATGATAGGAGGGGGAATCAGTCTAGGGTTTCG 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 412 CGGAGACCTTATGGTGGTGGATTTGATGATGATAGGAGGGGAAATCAGTCTAGGGTTTCA 471
Query 481 GATTTTCCTCAACCTTCTAGAGCTGATGAGGTTGATGATTGGGGGAAAGAGAAGAAACCA 540
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 472 GATTTTGCTCAACCTTCTAGAGCTGATGAGGTTGATGATTGGGGGAAAGCGAAGAAACCA 531
Query 541 CTTCCTTCTTTTGATCAAGGACGACAAGGTCGTTACAgtggcgatggtggtggttttgga 600
|||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct 532 CTTCCTTCTTTTGATCAAGGACGACAAGGTCGTTACGGTGGCGGTGGAGGTGGTTTTGGA 591
Query 601 ---ggtggtggaagtggttttggaggcggtggt-g--gtgg---tgga---ggtggaggg 648
|||||||||||||||||||||||||||||| | |||| |||| ||||| ||
Sbjct 592 GGCGGTGGTGGAAGTGGTTTTGGAGGCGGTGGTGGAAGTGGTTTTGGAGGCGGTGGTGGA 651
Query 649 tTATCTAGAGCTGATGATGTTGATAATTGGGGTGCAGGGAAAAGGCAAGCACCGGTTAGA 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TTATCTAGAGCTGATGATGTTGATAATTGGGGTGCAGGGAAAAGGCAAGCACCGGTTAGA 711
Query 709 TCATCTACGTTTGGGTCGAGTTTTGGTGATTCAGGTCAGGAAGAACGTCGTCGTTTGGTT 768
|||||||| |||||||| |||||||||||||||| |||||| ||||||||||||||||||
Sbjct 712 TCATCTACATTTGGGTCAAGTTTTGGTGATTCAGTTCAGGAGGAACGTCGTCGTTTGGTT 771
Query 769 TTGGAACCAAGAAAGGTTGAGTCAGGAG-GAAGTGAGACTCCACCTGTTGTTGAGAAGAC 827
||||||||| | |||||||| ||||||| | ||||| |||||| ||||| ||||||||||
Sbjct 772 TTGGAACCACGGAAGGTTGAATCAGGAGCG-AGTGAAACTCCAACTGTTATTGAGAAGAC 830
Query 828 GAGTAAGCCGAATCCATTTGGGGCAGCTAGACCGAGGGAGGATGTTTTGGCGGAGAAAGG 887
||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 831 GAGTAAGCCTAACCCGTTTGGAGCAGCTAGACCGAGGGAGGATGTTTTGGCGGAGAAAGG 890
Query 888 TTTGGATTGGAAGAAGATTGACTCAGAGATTGAGGCTAAGAAAGGAAGTTCTCAAACGAG 947
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 891 TTTGGATTGGAAGAAGATTGACTCAGAGATTGAGGCTAAGAAAGGAGGTTCTCAAACGAG 950
Query 948 TAGGCCAACGAGTGCACATTCTAGTAGACCTTCTAGTGCTCAATCTAACAGGTCTGAGAG 1007
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 951 TAGGCCAACGAGTGCACATTCGAGCAGACCTTCTAGTGCTCAATCTAACAGGTCTGAGAG 1010
Query 1008 TTCAGGATTGAATAATGTGGTGAAACCGAGACCAAAGGTGAATCCTTTTGGCGATGCAAA 1067
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1011 TTCAGGGTTGAATAATGTGGTGAAACCGAGACCAAAGGTGAATCCTTTTGGCGATGCGAA 1070
Query 1068 GCCTCGAGAAGTGTTGTTAGAGGAACAAGGGAAGGATTGGCGTAAGATGGATTTGGAACT 1127
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1071 GCCTCGAGAAGTGTTGCTAGAGGAACAAGGGAAGGATTGGCGTAAGATGGATATGGAACT 1130
Query 1128 CGAGCATCGCAGGGTTGACAGGCCTgaaacagaagaagagaagatgttgaaagaagagat 1187
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1131 CGAGCATCGCAGGGTTGACAGGCCTGAAACAGAAGAAGAAAAGATGTTGAAAGAAGAGAT 1190
Query 1188 tgaagagctaaggaaaaaactcgagaaggaaTCCGTTGCTCCAGAGATCAAGGAATCTGA 1247
|||||| | |||||||||||||||| || ||| ||||||||||||||
Sbjct 1191 TGAAGAACAAAGGAAAAAACTCGAG-------CC--------AGATATCAAGGAATCTGA 1235
Query 1248 TCAAGAACCTGGCAGTAATAATAATCACAATGATTTACCAGAAATAATACGTGGGAAAGA 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 TCAAGAACCTGGCAGTAATAATAATCACAATGATTTACCAGAAATAATACGTGGGAAAGA 1295
Query 1308 GAAAGATCTGGAAATACTAACCCGTGAATTGGACGACAAAGTCAGGTTCAGGCAGAAACC 1367
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 GAAAGATTTGGAAATACTAACCCGTGAATTGGACGACAAAGTCAGGTTCAGGCAGAAACC 1355
Query 1368 AGTTGAGAGGCCCGGGTCTGGTGCAGGTAGAACCGGAACATATTCAGAAAGAACACATTC 1427
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1356 AGTTGAGAGGCCCGGGTCTGGTGCAGGCAGAACCGGAACATATTCAGAAAGAACACATTC 1415
Query 1428 CCGGGCTGGCTCAATTGATGAAACCAGGAGTTTTGAATCTACAGAGAGACCCAGATCACG 1487
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1416 CCGGGCTGGATCAATTGATGAAACCAGGAGTTTTGAATCCACAGAGAGACCCAGATCACG 1475
Query 1488 TGGTGCCGTCGATGCCTGGGTTAGACCAGCCAATGAGCAGCGAAGAAACTTTCAAGGAAC 1547
||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||
Sbjct 1476 TGGTGCCGTCGATGCCTGGGTTAGACCAGCCGATGATCAGCGAAGAAACTTCCAAGGAAG 1535
Query 1548 CAAAGAGCGCGGATTCTTCAGCAACAGGTCTTCCTCTAGGGAAGGATGGTAAGAAGAAAA 1607
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1536 CAAAGAGCGCGGATTCTTCAGCAACAGGTCTTCCTCTAGGGAAGGATGGTAAGAAGTAAA 1595
Query 1608 CGAAGAACAACCAAATGTGGGATATCTTTAACTACTACTACACAGTTCCCAGATTTTGAA 1667
||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 1596 CGAAGAACAACCAAATGTGGGATATGTTTAACTACT-CTACTCAGTTCCCAGATTTTGAA 1654
Query 1668 GAAGACTTAGAG 1679
||||||||||||
Sbjct 1655 GAAGACTTAGAG 1666
> Ahg920166 jgi|Araly1|920166|scaffold_101447.1
Length=1701
Score = 588 bits (318), Expect = 5e-167
Identities = 683/853 (80%), Gaps = 50/853 (6%)
Strand=Plus/Plus
Query 744 TCAGGAAGAACGTCGTCGT-TTGGTTTTGGAACCAAGAAAGGTTGAGT-CAGGAG-GAAG 800
|||||| || ||||||||| || || ||||||||| |||||||||| | |||||| | ||
Sbjct 816 TCAGGAGGAGCGTCGTCGTCTT-GTATTGGAACCACGAAAGGTTGA-TGCAGGAGTG-AG 872
Query 801 TGAGACTCCACCTGTTGTTGAGAAGACGAGTAAGCCGAATCCATTTGGGGCAGCTAGACC 860
||| |||||| ||| || | ||||||||||||||| || |||||||| || ||||||||
Sbjct 873 TGAAACTCCAACTGCTG--G-GAAGACGAGTAAGCCAAACCCATTTGGAGCTGCTAGACC 929
Query 861 GAGGGAGGATGTTTTGGCGGAGAAAGGTTTGGATTGGAAGAAGA-TTGACTCAGAGATTG 919
||| ||| | ||||||||||||||||| ||||| |||||||| | ||||||| || ||||
Sbjct 930 GAGAGAGCAAGTTTTGGCGGAGAAAGGCTTGGACTGGAAGAA-ACTTGACTCGGATATTG 988
Query 920 AGGCTAAGAAAGGAAGTTCTCAAACGAGTAGGCCAACGAGTGCACATTCTAGTAGACCTT 979
|||| || ||||| | ||||| || || ||| |||| || || || || ||||| |
Sbjct 989 AGGCCAA-AAAGG--G---ACAAACAAGCAGACCATCGAGCGCGCAATCCAGCAGACCAT 1042
Query 980 CTAGTGCTCAATCTAACAGGTCTGAGAGTTCAGGATTG---AA--T----AATGTGGTGA 1030
| |||||||||||||||||||| |||||||||| |||| || | ||||||||||
Sbjct 1043 CAAGTGCTCAATCTAACAGGTCCGAGAGTTCAGCATTGAACAATGTGGAGAATGTGGTGA 1102
Query 1031 AACCGAGACCAAAGGTGAATCCTTTTGGCGATGCAAAGCCTCGAGAAGTGTTGTTAGAGG 1090
||||||||||||||||||||||||| || |||||||| ||| | ||||| ||| | ||||
Sbjct 1103 AACCGAGACCAAAGGTGAATCCTTTCGGTGATGCAAAACCTAGGGAAGTATTGCTGGAGG 1162
Query 1091 AACAAGGGAAGGATTGGCGTAAGATGGATT-TGGAACTCGAGCATCGCAGGGTTGACAGG 1149
|||||||||| |||||||| ||||| |||| | |||||||||||||||||||||||||||
Sbjct 1163 AACAAGGGAAAGATTGGCGCAAGATTGATTCT-GAACTCGAGCATCGCAGGGTTGACAGG 1221
Query 1150 CCTgaaacagaagaagagaagatgttgaaagaagagattgaagagctaaggaaaaaactc 1209
||||||||||||| ||||| ||||||||| |||||||| ||||| ||| |||| ||||||
Sbjct 1222 CCTGAAACAGAAGGAGAGAGGATGTTGAAGGAAGAGATCGAAGAACTACGGAAGAAACTC 1281
Query 1210 gagaaggaaTCCG-T-T-GCTCCAGAGATCAAGGAATCTGATCAAGAA-CCTGGCAGTAA 1265
||||||||| | | | | || || |||| |||||||||| | || ||| ||| ||||||
Sbjct 1282 GAGAAGGAAGCAGCTATTGCACCTGAGAGCAAGGAATCTCAACAGGAATCCTA-CAGTAA 1340
Query 1266 TAATAATCACAATGATTTACCAGAAATAATACGTGGGAAAGAGAAAG-ATCTGGAAATAC 1324
| | || || || |||| || | ||||| | |||||| |||| | ||||| |||
Sbjct 1341 TCAC---CA-AA--ATCTACCGGATCTCATACGCGAGAAAGA-AAAGGACCTGGACTTAC 1393
Query 1325 TAACCCGTGAATTGGACGACAAAGTCAGGTTCAGGC-A-GAAACCAGTTGAGAGGCCCGG 1382
| | ||||||| |||||||||||||||||||||||| | || | |||||||||||| ||
Sbjct 1394 TGATCCGTGAACTGGACGACAAAGTCAGGTTCAGGCCACGAG-C-AGTTGAGAGGCCTGG 1451
Query 1383 GTCTGGTGCAGGTAGAACCGGAACATATTCAGAAAGAACACATTCCCGGGCTGGCTCAAT 1442
|| ||||| | ||| |||| | |||||||||||| | ||||| |||||||| |||||
Sbjct 1452 ATCCAGTGCAAGCAGAGCCGGTTCCTATTCAGAAAGACCTCATTCACGGGCTGGATCAAT 1511
Query 1443 TGATGAAACCAGGAGTTTTGAATCTACAGAGAGACCCAGATCACGTGGTGCCGTCGATGC 1502
||||| | |||| | ||||| | || ||||| ||||||||||| | | ||||
Sbjct 1512 CGATGAGTCTAGGAACGTCGAATCCATGGAAAGACCTAGATCACGTGGCACAGGCGATAA 1571
Query 1503 CTGGGTTAGACCAGCCA-ATGAGCAGCGAAGAAACTTTCAAGGAACCAAAGAGCGCGGAT 1561
||| ||||||| | |||| | | ||||||||| ||||||| ||| || || ||||
Sbjct 1572 TTGGCCAAGACCAGT-AGATGATC-G--AAGAAACTTCCAAGGAAGCAAGGAACGTGGAT 1627
Query 1562 TCTTCAGCAACAG 1574
|||||||||||||
Sbjct 1628 TCTTCAGCAACAG 1640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001265230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5