BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26410.1
Length=1601
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484403 jgi|Araly1|484403|fgenesh2_kg.5__395__AT3G26410.1 2366 0.0
> Ahg484403 jgi|Araly1|484403|fgenesh2_kg.5__395__AT3G26410.1
Length=1504
Score = 2366 bits (1281), Expect = 0.0
Identities = 1434/1508 (95%), Gaps = 10/1508 (1%)
Strand=Plus/Plus
Query 29 TTGTCAAATTAGGGTTTTCG-TTTCAGGGG--AAagagagagagagagagaTGTGGTTTC 85
||| |||||||||||||| | ||| |||| ||| ||||||||||||||||||||||||
Sbjct 1 TTGACAAATTAGGGTTTTGGATTT-TGGGGAAAAAAAGAGAGAGAGAGAGATGTGGTTTC 59
Query 86 TGTGTGTCTTCTATCACAGGCTATTAGACTTCAGAAAGCCAGAAGTGGAAGCTTTAGCTG 145
| ||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 60 TATGTGTATTCTATCACAGACTATTAGATTTCAGAAAGCCAGAAGTTGAAGCTTTAGCTG 119
Query 146 AACTCTTCGGAGAAGAGATTGCAGAGAATGAGTCTCTCCAATGGCGTCTACCTGAAAATC 205
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 120 AACTCTTCGGAGAAGAGATTGCAGAGAATGAGTCTCTCCAATGGCGTTTACCTGAACATC 179
Query 206 ACCATAACGATACTCCATTCCATTTCGTTCAACTTTCATCTGAAGAAATCGCTCGTAACA 265
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 180 ATCATAACGATACTCCATTCCATTTCGTTCAACTTTCTTCAGAAGAAATCGCTCGTAACA 239
Query 266 TTGCTAAACGAAGCATATTGGTGAAAGGAATGTATGAGCTTTGGGGTGAAGGAACTTGTT 325
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTGCTAAAAGAAGCATATTGGTGAAAGGAATGTATGAGCTTTGGGGTGAAGGAACTTGTT 299
Query 326 ATGAAGAGCTTAAAGACTCGATTCAAAGCTACCCTGATTCTCGAAAGCTTCCATTTCTCA 385
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 300 ATGAAGAGCTTAAAGACTCGATTCAAAGTTACCCTGATTCTCGAAAGCTTCCATTTCTAA 359
Query 386 CTTCTGATTCAACTTTTAGAATCTCTGTTGAAACTTTTGGAAAGGCTTTAACTTTTGACG 445
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 CTTCTGATTCAACTTTTAGAATCTCTGTTGAAACTTTTGGAAAGGCTTTAACTTTTGAAG 419
Query 446 AGCAGAAA-GATCGAATCCAGTCGT-TTACTTATATACCATTTGAGGGTCGTGTTAACTT 503
|||| ||| |||||||||||||| | ||||||||||||||||||||||||| ||||| ||
Sbjct 420 AGCA-AAAGGATCGAATCCAGTC-TCTTACTTATATACCATTTGAGGGTCGGGTTAATTT 477
Query 504 GAAGAACCCAGATCATAACTTTTTTCTAATGGAAATGATTGAATCTGAAGAGAACAATGG 563
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GAAGAACCCAGATCACAACTTTTTTCTAATGGAAATGATTGAATCTGAAGAGAACAATGG 537
Query 564 ACTTCAACCTATTCTACAGAGAAGGATATTTTTTGGGAGGGAGGTTGGTTTTGCTGATAG 623
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 538 ACTTCAACCTATTCTGCAGAGGAGGATATTTTTTGGGAGGGAGGTTGGTTTTGCTGATAG 597
Query 624 GAAGCTTTTACCTACATTTCAGTTGAAATCTCGTACTTACCTTGGTCCAACTGCTATGGA 683
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 598 GAAGCTTTTACCTACATTTCAGTTGAAATCTCGTACTTACCTTGGTCCGACTGCTATGGA 657
Query 684 TGCTGAAATGGCTTTCTTAATGGCTAATCAAGCGAAAGCTACTTCGGGAAAACTTGTGTA 743
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 658 TGCTGAAATGGCTTTCTTAATGGCTAATCAAGCGAAAGCTACATCGGGGAAACTTGTGTA 717
Query 744 TGATCCTTTTGTTGGTACTGGGAGCATTCTTGTTTCTGCTGCACGCTTTGGCGCAATGAC 803
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 718 TGATCCTTTTGTTGGTACTGGGAGCATTCTTGTTTCTGCTGCTCGGTTTGGCGCAATGAC 777
Query 804 AATGGGTGCAGATATCGATATCAGAGTAGTGCGTGATGGACGTGGTCCAGATTGTAATGT 863
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AATGGGTGCAGATATTGATATCAGAGTAGTGCGTGATGGACGTGGTCCAGATTGTAATGT 837
Query 864 TTGGAGCAATTTCAAACAGTATGGATTACCAATGCCGGTAGCTTTACTTAGAATGGATAA 923
||||||||||||||| |||||||||||||| | ||| |||||||||||||||||||||||
Sbjct 838 TTGGAGCAATTTCAAGCAGTATGGATTACCTACGCCAGTAGCTTTACTTAGAATGGATAA 897
Query 924 TAACGTTCCTCCTTGGCGATCGGGGCTAAAGGAGATCTTTGATGCAATTATCTGCGATCC 983
|| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 898 CAATGTTCCTCCTTGGCGTTCGGGGCTAAAGGAGATCTTTGATGCAATTATCTGTGATCC 957
Query 984 ACCTTACGGGGTTCGTGCTGGTGGACGTAAATCCGGTGGTAGGAAAATCCTTAGAGGAAC 1043
||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||
Sbjct 958 ACCTTACGGGGTTCGAGCTGGTGGACGTAAATCCGGTGGTCGGAAAATTCTTAGAGGGAC 1017
Query 1044 AGTGGATCCTTACACTGTCCCTGATGACAAAAGAACAGATCACATTCCATCCACTGGTGC 1103
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AGTGGATCCTTACACCGTCCCTGATGACAAAAGAACAGATCACATTCCATCCACTGGTGC 1077
Query 1104 ATATAGTCTAGTGGAGTGTGTTCATGATCTACTTCATCTTGCTGCAAGAATGTTGGTGAT 1163
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1078 ATATAGTCTAGTGGAGTGTGTTCATGATCTGCTTCATCTTGCTGCAAGAATGCTGGTGAT 1137
Query 1164 GAAAGGCAGGCTCGTCTTTTTCTTCCCGGTTTTGAGAGATGAGACTGGCAGCGAGGTTAA 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GAAAGGCAGGCTCGTCTTTTTCTTCCCGGTTTTGAGAGATGAGACTGGCAGCGAGGTTAA 1197
Query 1224 GTT-CCCGGAGCACCCGTGTTTCAAGTTAGTAGCTGTATCTGAACAGATCCTGAGCTCGC 1282
||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1198 GTTTCCCG-AGCACCCGTGTTTCAAGTTAGTAGCTGTCTCTGAACAGATCCTGAGCTCGA 1256
Query 1283 GGTACAGTCGGGTTCTGCTAACGATGGTGAAAGTAGAGCCTTATAGTGAAGAGGTTGAAG 1342
| |||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 1257 GATACAGTCGTGTTCTGCTAACCATGGTGAAAGTGGAGCCTTATAGTGAAGATATTGAAG 1316
Query 1343 AAGCTGCTCGTTTAATGCATTTAGAGTTTAGAGAGAATCATCTTAAGTGGTTAGAGGATG 1402
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1317 AAGCTGCTCGTTTAATGCATTTAGAGTTTAGAGAGAATCATCTTAAGTGGTTAGAGGACG 1376
Query 1403 GTAATATTCACTCCTCTATATTCAAACCCATTGATTCTTCTCAGATTGACACTGATTCCA 1462
|||||||||| |||||| | || |||||||||||||||||||||||| |||||||| |||
Sbjct 1377 GTAATATTCATTCCTCTGTTTTTAAACCCATTGATTCTTCTCAGATTCACACTGATCCCA 1436
Query 1463 AAGCCTTCAAAGATCCAAAACCTAAGTATAGAGGGAAGTATGTGTAAGCAATTAGTTTTG 1522
|| |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1437 AAACCTTTAAAGATCCAAAACCTAAGTATAGAGGGAAGTATGTGTAAGCACTGAGTTTTG 1496
Query 1523 TGtttttt 1530
|||| |||
Sbjct 1497 TGTTCTTT 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59992135875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5