BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26420.1
Length=3033
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896503 jgi|Araly1|896503|Al_scaffold_0005_469 1042 0.0
Ahg322778 jgi|Araly1|322778|fgenesh1_pm.C_scaffold_5000322 1033 0.0
Ahg936345 jgi|Araly1|936345|scaffold_500536.1 346 6e-94
> Ahg896503 jgi|Araly1|896503|Al_scaffold_0005_469
Length=744
Score = 1042 bits (564), Expect = 0.0
Identities = 691/750 (92%), Gaps = 18/750 (2%)
Strand=Plus/Plus
Query 93 ATGTCTGAAGATCCGGAGTACCGTTGCTTCATTGGTGGGCTTGCTTGGACAACGTCTGAT 152
||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1 ATGTCTGAAGACCCGGAGTACCGTTGTTTCATTGGTGGGCTTGCTTGGTCAACGTCTGAT 60
Query 153 CGTGGTCTCAGAGATGCCTTTGAGAAGTATGGTCACCTCGTTGAGGCCAAGGTGGTTCTT 212
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CGTGGTCTCAGAGATGCCTTTGAGAAGTACGGTCACCTCGTTGAGGCCAAGGTGGTTCTT 120
Query 213 GACAAGTTTTCTGGTCGCTCCCGTGGTTTTGGATTCATCACTTTCGATGAGAAAAAAGCT 272
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 121 GACAAGTTTTCTGGTCGCTCCCGTGGTTTTGGGTTCATCACTTTTGATGAGAAAAAAGCT 180
Query 273 ATGGATGAAGCTATTGCAGCAATGAATGGAATGGATTTGGATGGGCGAACTATCACTGTT 332
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 ATGGATGAAGCTATTGCAGCAATGAATGGAATGGATTTAGATGGGCGAACTATCACTGTT 240
Query 333 GATAAAGCTCAGCCTCATCAGGGTGG-TGCAGGCAGAGATAATGATGGTGACCGTGGTCG 391
|||||||| ||||| ||||||||||| | ||||||||||| ||||||| || || ||||
Sbjct 241 GATAAAGCCCAGCCACATCAGGGTGGGT-CAGGCAGAGATCATGATGGAGATCGCAGTCG 299
Query 392 AGACCGTGGATATGATCGTGATCGCAGTCGTCCCTCTGGTGGGCGAGGTGGTGGAGATTG 451
|| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 300 TGATCGTGGATATGATCGTGATCGTAGCCGTCCCTCTGGTGGGCGCGGTGGTGGAGATTG 359
Query 452 CTTTAAATGTGGCAAGCCTGGACATTTTGCAAGAGAGTGTCCTTCTGAAAGTAGTAGAGA 511
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 CTTTAAATGTGGCAAGCCTGGACATTTTGCAAGGGAGTGTCCTTCTGAAAGTAGTAGAGA 419
Query 512 TGGTGGTGGAAGGTTCAGCTCAAAGGATGATAGGTACAGTTCGAAGGACGATAGGTATGG 571
|||||| ||||||| |||||||||||| |||||||||||| | |||||||||||||||||
Sbjct 420 TGGTGGCGGAAGGTACAGCTCAAAGGACGATAGGTACAGTGCTAAGGACGATAGGTATGG 479
Query 572 TGCAAAAGATGATAGGTATGG-TGCAAAGGAGGATAGGTATGG-TGCAAAGGATGATAGG 629
||||||||| |||||||| || | ||| ||| |||||||| | | ||| ||||||||||
Sbjct 480 TGCAAAAGAGGATAGGTACGGCTCCAA-GGATGATAGGTACAGCTCCAA-GGATGATAGG 537
Query 630 TACAGCTCCAAG-GATGATAGGTACAGCTCCAA-GGATGATAGGTATGGTAGTAGGGATG 687
||||| | ||| ||||||||||| | | ||| ||||||||||||||||||||||||||
Sbjct 538 TACAG-TGCAAAAGATGATAGGTATGG-TGCAAAGGATGATAGGTATGGTAGTAGGGATG 595
Query 688 GTGGAGGTAGTCGCTATGGACCTGATCGCAGTGGTGAACGCGCTGGAGGACGCAGCCGGG 747
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 596 GTGGGGGTAGTCGCTATGGACCTGATCGCAGTGGAGAACGCGCTGGAGGACGTAGCCGGG 655
Query 748 ATGGTGGCAGCCGTGGAGCTCCAGGAGGTGAGAGGCACAGTCGTGCT-C--C---ATATG 801
|||||||||||||||||| |||||||||||||||||||||||||||| | | |||||
Sbjct 656 ATGGTGGCAGCCGTGGAGGTCCAGGAGGTGAGAGGCACAGTCGTGCTACTGCTCCATATG 715
Query 802 ACCGCCCCAGAGCTGGTGG-TTTCCACTAG 830
||||||||||||||||||| |||| |||||
Sbjct 716 ACCGCCCCAGAGCTGGTGGCTTTC-ACTAG 744
Score = 135 bits (73), Expect = 1e-30
Identities = 91/100 (91%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 574 CAAAAGATGATAGGTATGGTGCAAAGGAGGATAGGTATGGTGCAAAGGATGATAGGTACA 633
|||| || |||||||| |||| ||||| ||||||||||||||||| || |||||||||
Sbjct 440 CAAAGGACGATAGGTACAGTGCTAAGGACGATAGGTATGGTGCAAAAGAGGATAGGTACG 499
Query 634 GCTCCAAGGATGATAGGTACAGCTCCAAGGATGATAGGTA 673
||||||||||||||||||||||||||||||||||||||||
Sbjct 500 GCTCCAAGGATGATAGGTACAGCTCCAAGGATGATAGGTA 539
Score = 122 bits (66), Expect = 1e-26
Identities = 87/97 (90%), Gaps = 1/97 (1%)
Strand=Plus/Plus
Query 519 GGA-AGGTTCAGCTCAAAGGATGATAGGTACAGTTCGAAGGACGATAGGTATGGTGCAAA 577
||| |||| | |||| ||||||||||||||||| || ||||| |||||||| |||||||
Sbjct 489 GGATAGGTACGGCTCCAAGGATGATAGGTACAGCTCCAAGGATGATAGGTACAGTGCAAA 548
Query 578 AGATGATAGGTATGGTGCAAAGGAGGATAGGTATGGT 614
|||||||||||||||||||||||| ||||||||||||
Sbjct 549 AGATGATAGGTATGGTGCAAAGGATGATAGGTATGGT 585
Score = 97.1 bits (52), Expect = 7e-19
Identities = 85/101 (84%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 532 CAAAGGATGATAGGTACAGTTCGAAGGACGATAGGTA-TGGTGCAAAAGATGATAGGTAT 590
|||| || ||||||||| | || ||||| |||||||| | | | || |||||||||||
Sbjct 482 CAAAAGAGGATAGGTACGGCTCCAAGGATGATAGGTACAGCT-CCAAGGATGATAGGTAC 540
Query 591 GGTGCAAAGGAGGATAGGTATGGTGCAAAGGATGATAGGTA 631
||||||| || |||||||||||||||||||||||||||||
Sbjct 541 AGTGCAAAAGATGATAGGTATGGTGCAAAGGATGATAGGTA 581
> Ahg322778 jgi|Araly1|322778|fgenesh1_pm.C_scaffold_5000322
Length=1140
Score = 1033 bits (559), Expect = 0.0
Identities = 654/701 (93%), Gaps = 2/701 (0%)
Strand=Plus/Plus
Query 2218 AGGTGGAGTGTTTAAGAAATTGCTTCCCAAGAAAGAGTATTTCTCTCAAGCATTGTACAC 2277
||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||
Sbjct 441 AGGTGGAGTGTTTAAGAAATTACTTCCGAAGAAAGCGTATTTCTCTCAAGCATTGTACAC 500
Query 2278 ATTCGACATCGGTCAGAACGATCTCACCGCTGGACTAAAACTTAACATGACTTCAGATCA 2337
|||||||||||||||||| ||||| ||| ||||| ||||||| ||||||||| |||||||
Sbjct 501 ATTCGACATCGGTCAGAATGATCTTACCTCTGGATTAAAACTCAACATGACTACAGATCA 560
Query 2338 AATCAAGGCTTATATACCAGATGTTCATGATCAGCTCTCTAACGTCATTCGTAAGGTGTA 2397
|||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||
Sbjct 561 AATCAAGGCTTATATACCAGATGTTCTTGATCAATTCTCTAACGCCATTCGTAAGGTGTA 620
Query 2398 TAGTAAAGGAGGAAGAAGATTTTGGATACACAACACAGCTCCACTTGGTTGTTTACCTTA 2457
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 621 TAGTAAAGGAGGAAGAAGATTCTGGATACACAACACAGCTCCACTTGGTTGTTTACCTTA 680
Query 2458 TGTTTTAGACCGGTTCCCAGTACCGGCTTCTCAAATCGACAATCACGGTTGTGCAATTCC 2517
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 681 TGTTTTAGACCGTTTTCCAGTACCGGCTTCTCAAATCGACAATCACGGTTGTGCAATTTC 740
Query 2518 GCGTAATGAGATTGCTCGATACTATAACTCTGAACTTAAAAGAAGAGTGATTGAGTTGAG 2577
|||||||||||||||||| || |||||||||||||| ||||||||||| |||| ||| ||
Sbjct 741 GCGTAATGAGATTGCTCGGTATTATAACTCTGAACTAAAAAGAAGAGTAATTGGGTTAAG 800
Query 2578 AAAAGAGCTCTCTGAAGCTGCGTTTACTTATGTTGATATCTACTCTATCAAGCTTACTCT 2637
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 801 AAAAGAGCTCTCTGAAGCTGCACTTACTTATGTTGATATCTACTCTGTCAAGCTTACTCT 860
Query 2638 CATCACTCAAGCCAAGAAACTCGGTTTTAGGTATCCTTTGGTGGCTTGTTGTGGACATGG 2697
|||||||| ||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 861 AATCACTCATCCCAAGAACCTAGGTTTTAGATATCCTTTGGTGGCTTGTTGTGGACATGG 920
Query 2698 TGGGAAGTACAATTTCAACAAGCTTATTAAATGTGGAGCTAAAGTTATGAT-CAAAGGGA 2756
|||||||||||||| ||||||||| || ||||||||||||||||||||| | ||| ||||
Sbjct 921 TGGGAAGTACAATTACAACAAGCTAATCAAATGTGGAGCTAAAGTTATGGTGCAA-GGGA 979
Query 2757 AAGAGATTGTGCTTGCTAAGTCTTGTAACGATGTGTCGTTTAGAGTTAGCTGGGACGGTA 2816
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 980 AAGAGATTGTCCTTGCTAAGTCTTGTAACGACGTGTCGTTTAGAGTTAGCTGGGACGGTA 1039
Query 2817 TACATTTCACTGAAACGACAAACAGTTGGATCTTTCAGCAAATAAACGACGGGGCGTTTT 2876
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1040 TACATTTCACTGAAACGGCAAACAGTTGGATCTTTCAGCAAATAAACGGCGGGGCGTTTT 1099
Query 2877 CGGATCCTCCTCTTCCTGTGAAGTCTGCCTGCACCAGATAG 2917
||||||||||| |||| | |||| ||||||||||||||||
Sbjct 1100 CGGATCCTCCTATTCCCCTTAAGTTTGCCTGCACCAGATAG 1140
Score = 309 bits (167), Expect = 8e-83
Identities = 215/237 (91%), Gaps = 7/237 (3%)
Strand=Plus/Plus
Query 1985 ATGGAAACTAATCTCTTGTTGGTAAAGTGT-GTCTTATTAGCATCATGTCTCATACATCC 2043
||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 1 ATGGAAACTAATCACTTGTTGATAAAGT-TAGTCTTATTAGCATCATGTCTCATACATCA 59
Query 2044 CCGTGCTTGCTCTCCTTCTTGCAATTTCCCGGCGATATTCAACTTCGGCGACTCTAACTC 2103
|||| ||||||| | |||||||||| |||||| | |||||||||||||||||||||||
Sbjct 60 ACGTGTTTGCTCT-C--CTTGCAATTTTCCGGCGTTCTTCAACTTCGGCGACTCTAACTC 116
Query 2104 CGACACAGGTGGCCTTTCTGCCT-CTTTCGGACAAGCCCCTTACCCAAATGGCCAAACCT 2162
||||||||||||||| || || | | |||||||||||||||||||| ||||||| ||| |
Sbjct 117 CGACACAGGTGGCCTCTCCGC-TGCCTTCGGACAAGCCCCTTACCCTAATGGCCGAACTT 175
Query 2163 TCTTCCACTCCCCTTCCGGTCGTTTCTCAGATGGTCGACTCATCATTGACTTCATAG 2219
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 176 TCTTCCACTCCCCTTCCGGTCGTTTCGCAGATGGTCGACTCATCATTGACTTCATAG 232
> Ahg936345 jgi|Araly1|936345|scaffold_500536.1
Length=259
Score = 346 bits (187), Expect = 6e-94
Identities = 192/194 (99%), Gaps = 1/194 (1%)
Strand=Plus/Plus
Query 945 GATGTGTTCTCTATTTTGGCCCTAAACTCAAGAGTCGACTATGTTCCTAAAGTGCTCTCT 1004
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATGTG-TCTCTATTTTGGCCCTAAACTCAAGAGTCGACTATGTTCCTAAAGTGCTCTCT 59
Query 1005 CTCCTTTTGATATGTTGATCCCTATGGAAACCTTGTGCTTGGTTGGTTTGAGACAATTTG 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CTCCTTTTGATATGTTGATCCCTATGGAAACCTTGTGCTTGGTTGGTTTGAGACAATTTG 119
Query 1065 AGATGTGCTACTTTATGCTTATCGTAATGAATGCGTGGGTTATCCCCCAACACCAAATAT 1124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 120 AGATGTGCTACTTTATGCTTATCGTAATGAATGCGTGGGTTATCCCCCAACACCAAATTT 179
Query 1125 GCAAAAGCCTCAGG 1138
||||||||||||||
Sbjct 180 GCAAAAGCCTCAGG 193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114537366715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5