BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26430.1
Length=3162
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322778 jgi|Araly1|322778|fgenesh1_pm.C_scaffold_5000322 1653 0.0
Ahg896503 jgi|Araly1|896503|Al_scaffold_0005_469 1042 0.0
Ahg936345 jgi|Araly1|936345|scaffold_500536.1 346 6e-94
> Ahg322778 jgi|Araly1|322778|fgenesh1_pm.C_scaffold_5000322
Length=1140
Score = 1653 bits (895), Expect = 0.0
Identities = 1065/1147 (93%), Gaps = 11/1147 (1%)
Strand=Plus/Plus
Query 1982 ATGGAAACTAATCTCTTGTTGGTAAAGTGT-GTCTTATTAGCATCATGTCTCATACATCC 2040
||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 1 ATGGAAACTAATCACTTGTTGATAAAGT-TAGTCTTATTAGCATCATGTCTCATACATCA 59
Query 2041 CCGTGCTTGCTCTCCTTCTTGCAATTTCCCGGCGATATTCAACTTCGGCGACTCTAACTC 2100
|||| ||||||| | |||||||||| |||||| | |||||||||||||||||||||||
Sbjct 60 ACGTGTTTGCTCT-C--CTTGCAATTTTCCGGCGTTCTTCAACTTCGGCGACTCTAACTC 116
Query 2101 CGACACAGGTGGCCTTTCTGCCT-CTTTCGGACAAGCCCCTTACCCAAATGGCCAAACCT 2159
||||||||||||||| || | || | |||||||||||||||||||| ||||||| ||| |
Sbjct 117 CGACACAGGTGGCCTCTCCG-CTGCCTTCGGACAAGCCCCTTACCCTAATGGCCGAACTT 175
Query 2160 TCTTCCACTCCCCTTCCGGTCGTTTCTCAGATGGTCGACTCATCATTGACTTCATAGCGG 2219
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 176 TCTTCCACTCCCCTTCCGGTCGTTTCGCAGATGGTCGACTCATCATTGACTTCATAGCGG 235
Query 2220 AGGAGTTAGGTTTACCATACCTAAATGCTTTCTTAGACTCCATCGGTTCAAACTTCAGCC 2279
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 236 AGGAGTTAGGGTTACCATACCTAAATGCTTTCTTGGACTCCATCGGTTCAAACTTCAGCC 295
Query 2280 ATGGTGCCAATTTCGCCACCGCTGGCTCCACCGTCCGGCCACCAAAC-GCAACCATCGCT 2338
||||||||||||||||||||||||| |||||| |||||||||||||| ||| |||| ||
Sbjct 296 ATGGTGCCAATTTCGCCACCGCTGGTTCCACCATCCGGCCACCAAACAGCA-CCATTTCT 354
Query 2339 CAGAGCGGTGTGAGTCCAATCTCTCTCGACGTTCAATTGGTCCAATTCTCCGATTTCATC 2398
|||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 355 CAGAGCGGTGCAAGTCCAATCTCTCTCGACGTTCAATTGGTTCAACTCTCCGATTTCCTC 414
Query 2399 ACACGATCACAACTCATTCGCAATCGAGGTGGAGTGTTTAAGAAATTGCTTCCCAAGAAA 2458
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 415 ACACGATCACAACTCATTCGCAATCGAGGTGGAGTGTTTAAGAAATTACTTCCGAAGAAA 474
Query 2459 GAGTATTTCTCTCAAGCATTGTACACATTCGACATCGGTCAGAACGATCTCACCGCTGGA 2518
| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 475 GCGTATTTCTCTCAAGCATTGTACACATTCGACATCGGTCAGAATGATCTTACCTCTGGA 534
Query 2519 CTAAAACTTAACATGACTTCAGATCAAATCAAGGCTTATATACCAGATGTTCATGATCAG 2578
||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 535 TTAAAACTCAACATGACTACAGATCAAATCAAGGCTTATATACCAGATGTTCTTGATCAA 594
Query 2579 CTCTCTAACGTCATTCGTAAGGTGTATAGTAAAGGAGGAAGAAGATTTTGGATACACAAC 2638
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 595 TTCTCTAACGCCATTCGTAAGGTGTATAGTAAAGGAGGAAGAAGATTCTGGATACACAAC 654
Query 2639 ACAGCTCCACTTGGTTGTTTACCTTATGTTTTAGACCGGTTCCCAGTACCGGCTTCTCAA 2698
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 655 ACAGCTCCACTTGGTTGTTTACCTTATGTTTTAGACCGTTTTCCAGTACCGGCTTCTCAA 714
Query 2699 ATCGACAATCACGGTTGTGCAATTCCGCGTAATGAGATTGCTCGATACTATAACTCTGAA 2758
|||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||
Sbjct 715 ATCGACAATCACGGTTGTGCAATTTCGCGTAATGAGATTGCTCGGTATTATAACTCTGAA 774
Query 2759 CTTAAAAGAAGAGTGATTGAGTTGAGAAAAGAGCTCTCTGAAGCTGCGTTTACTTATGTT 2818
|| ||||||||||| |||| ||| ||||||||||||||||||||||| |||||||||||
Sbjct 775 CTAAAAAGAAGAGTAATTGGGTTAAGAAAAGAGCTCTCTGAAGCTGCACTTACTTATGTT 834
Query 2819 GATATCTACTCTATCAAGCTTACTCTCATCACTCAAGCCAAGAAACTCGGTTTTAGGTAT 2878
|||||||||||| ||||||||||||| |||||||| ||||||| || |||||||| |||
Sbjct 835 GATATCTACTCTGTCAAGCTTACTCTAATCACTCATCCCAAGAACCTAGGTTTTAGATAT 894
Query 2879 CCTTTGGTGGCTTGTTGTGGACATGGTGGGAAGTACAATTTCAACAAGCTTATTAAATGT 2938
|||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 895 CCTTTGGTGGCTTGTTGTGGACATGGTGGGAAGTACAATTACAACAAGCTAATCAAATGT 954
Query 2939 GGAGCTAAAGTTATGAT-CAAAGGGAAAGAGATTGTGCTTGCTAAGTCTTGTAACGATGT 2997
||||||||||||||| | ||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 955 GGAGCTAAAGTTATGGTGCAA-GGGAAAGAGATTGTCCTTGCTAAGTCTTGTAACGACGT 1013
Query 2998 GTCGTTTAGAGTTAGCTGGGACGGTATACATTTCACTGAAACGACAAACAGTTGGATCTT 3057
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1014 GTCGTTTAGAGTTAGCTGGGACGGTATACATTTCACTGAAACGGCAAACAGTTGGATCTT 1073
Query 3058 TCAGCAAATAAACGACGGGGCGTTTTCGGATCCTCCTCTTCCTGTGAAGTCTGCCTGCAC 3117
|||||||||||||| |||||||||||||||||||||| |||| | |||| |||||||||
Sbjct 1074 TCAGCAAATAAACGGCGGGGCGTTTTCGGATCCTCCTATTCCCCTTAAGTTTGCCTGCAC 1133
Query 3118 CAGATAG 3124
|||||||
Sbjct 1134 CAGATAG 1140
> Ahg896503 jgi|Araly1|896503|Al_scaffold_0005_469
Length=744
Score = 1042 bits (564), Expect = 0.0
Identities = 691/750 (92%), Gaps = 18/750 (2%)
Strand=Plus/Plus
Query 90 ATGTCTGAAGATCCGGAGTACCGTTGCTTCATTGGTGGGCTTGCTTGGACAACGTCTGAT 149
||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1 ATGTCTGAAGACCCGGAGTACCGTTGTTTCATTGGTGGGCTTGCTTGGTCAACGTCTGAT 60
Query 150 CGTGGTCTCAGAGATGCCTTTGAGAAGTATGGTCACCTCGTTGAGGCCAAGGTGGTTCTT 209
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CGTGGTCTCAGAGATGCCTTTGAGAAGTACGGTCACCTCGTTGAGGCCAAGGTGGTTCTT 120
Query 210 GACAAGTTTTCTGGTCGCTCCCGTGGTTTTGGATTCATCACTTTCGATGAGAAAAAAGCT 269
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 121 GACAAGTTTTCTGGTCGCTCCCGTGGTTTTGGGTTCATCACTTTTGATGAGAAAAAAGCT 180
Query 270 ATGGATGAAGCTATTGCAGCAATGAATGGAATGGATTTGGATGGGCGAACTATCACTGTT 329
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 ATGGATGAAGCTATTGCAGCAATGAATGGAATGGATTTAGATGGGCGAACTATCACTGTT 240
Query 330 GATAAAGCTCAGCCTCATCAGGGTGG-TGCAGGCAGAGATAATGATGGTGACCGTGGTCG 388
|||||||| ||||| ||||||||||| | ||||||||||| ||||||| || || ||||
Sbjct 241 GATAAAGCCCAGCCACATCAGGGTGGGT-CAGGCAGAGATCATGATGGAGATCGCAGTCG 299
Query 389 AGACCGTGGATATGATCGTGATCGCAGTCGTCCCTCTGGTGGGCGAGGTGGTGGAGATTG 448
|| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 300 TGATCGTGGATATGATCGTGATCGTAGCCGTCCCTCTGGTGGGCGCGGTGGTGGAGATTG 359
Query 449 CTTTAAATGTGGCAAGCCTGGACATTTTGCAAGAGAGTGTCCTTCTGAAAGTAGTAGAGA 508
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 CTTTAAATGTGGCAAGCCTGGACATTTTGCAAGGGAGTGTCCTTCTGAAAGTAGTAGAGA 419
Query 509 TGGTGGTGGAAGGTTCAGCTCAAAGGATGATAGGTACAGTTCGAAGGACGATAGGTATGG 568
|||||| ||||||| |||||||||||| |||||||||||| | |||||||||||||||||
Sbjct 420 TGGTGGCGGAAGGTACAGCTCAAAGGACGATAGGTACAGTGCTAAGGACGATAGGTATGG 479
Query 569 TGCAAAAGATGATAGGTATGG-TGCAAAGGAGGATAGGTATGG-TGCAAAGGATGATAGG 626
||||||||| |||||||| || | ||| ||| |||||||| | | ||| ||||||||||
Sbjct 480 TGCAAAAGAGGATAGGTACGGCTCCAA-GGATGATAGGTACAGCTCCAA-GGATGATAGG 537
Query 627 TACAGCTCCAAG-GATGATAGGTACAGCTCCAA-GGATGATAGGTATGGTAGTAGGGATG 684
||||| | ||| ||||||||||| | | ||| ||||||||||||||||||||||||||
Sbjct 538 TACAG-TGCAAAAGATGATAGGTATGG-TGCAAAGGATGATAGGTATGGTAGTAGGGATG 595
Query 685 GTGGAGGTAGTCGCTATGGACCTGATCGCAGTGGTGAACGCGCTGGAGGACGCAGCCGGG 744
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 596 GTGGGGGTAGTCGCTATGGACCTGATCGCAGTGGAGAACGCGCTGGAGGACGTAGCCGGG 655
Query 745 ATGGTGGCAGCCGTGGAGCTCCAGGAGGTGAGAGGCACAGTCGTGCT-C--C---ATATG 798
|||||||||||||||||| |||||||||||||||||||||||||||| | | |||||
Sbjct 656 ATGGTGGCAGCCGTGGAGGTCCAGGAGGTGAGAGGCACAGTCGTGCTACTGCTCCATATG 715
Query 799 ACCGCCCCAGAGCTGGTGG-TTTCCACTAG 827
||||||||||||||||||| |||| |||||
Sbjct 716 ACCGCCCCAGAGCTGGTGGCTTTC-ACTAG 744
Score = 135 bits (73), Expect = 1e-30
Identities = 91/100 (91%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 571 CAAAAGATGATAGGTATGGTGCAAAGGAGGATAGGTATGGTGCAAAGGATGATAGGTACA 630
|||| || |||||||| |||| ||||| ||||||||||||||||| || |||||||||
Sbjct 440 CAAAGGACGATAGGTACAGTGCTAAGGACGATAGGTATGGTGCAAAAGAGGATAGGTACG 499
Query 631 GCTCCAAGGATGATAGGTACAGCTCCAAGGATGATAGGTA 670
||||||||||||||||||||||||||||||||||||||||
Sbjct 500 GCTCCAAGGATGATAGGTACAGCTCCAAGGATGATAGGTA 539
Score = 122 bits (66), Expect = 1e-26
Identities = 87/97 (90%), Gaps = 1/97 (1%)
Strand=Plus/Plus
Query 516 GGA-AGGTTCAGCTCAAAGGATGATAGGTACAGTTCGAAGGACGATAGGTATGGTGCAAA 574
||| |||| | |||| ||||||||||||||||| || ||||| |||||||| |||||||
Sbjct 489 GGATAGGTACGGCTCCAAGGATGATAGGTACAGCTCCAAGGATGATAGGTACAGTGCAAA 548
Query 575 AGATGATAGGTATGGTGCAAAGGAGGATAGGTATGGT 611
|||||||||||||||||||||||| ||||||||||||
Sbjct 549 AGATGATAGGTATGGTGCAAAGGATGATAGGTATGGT 585
Score = 97.1 bits (52), Expect = 7e-19
Identities = 85/101 (84%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 529 CAAAGGATGATAGGTACAGTTCGAAGGACGATAGGTA-TGGTGCAAAAGATGATAGGTAT 587
|||| || ||||||||| | || ||||| |||||||| | | | || |||||||||||
Sbjct 482 CAAAAGAGGATAGGTACGGCTCCAAGGATGATAGGTACAGCT-CCAAGGATGATAGGTAC 540
Query 588 GGTGCAAAGGAGGATAGGTATGGTGCAAAGGATGATAGGTA 628
||||||| || |||||||||||||||||||||||||||||
Sbjct 541 AGTGCAAAAGATGATAGGTATGGTGCAAAGGATGATAGGTA 581
> Ahg936345 jgi|Araly1|936345|scaffold_500536.1
Length=259
Score = 346 bits (187), Expect = 6e-94
Identities = 192/194 (99%), Gaps = 1/194 (1%)
Strand=Plus/Plus
Query 942 GATGTGTTCTCTATTTTGGCCCTAAACTCAAGAGTCGACTATGTTCCTAAAGTGCTCTCT 1001
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATGTG-TCTCTATTTTGGCCCTAAACTCAAGAGTCGACTATGTTCCTAAAGTGCTCTCT 59
Query 1002 CTCCTTTTGATATGTTGATCCCTATGGAAACCTTGTGCTTGGTTGGTTTGAGACAATTTG 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CTCCTTTTGATATGTTGATCCCTATGGAAACCTTGTGCTTGGTTGGTTTGAGACAATTTG 119
Query 1062 AGATGTGCTACTTTATGCTTATCGTAATGAATGCGTGGGTTATCCCCCAACACCAAATAT 1121
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 120 AGATGTGCTACTTTATGCTTATCGTAATGAATGCGTGGGTTATCCCCCAACACCAAATTT 179
Query 1122 GCAAAAGCCTCAGG 1135
||||||||||||||
Sbjct 180 GCAAAAGCCTCAGG 193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119451008320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5