BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26440.1
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322779 jgi|Araly1|322779|fgenesh1_pm.C_scaffold_5000323 1807 0.0
Ahg920165 jgi|Araly1|920165|scaffold_101446.1 734 0.0
Ahg481676 jgi|Araly1|481676|fgenesh2_kg.4__736__AT2G28310.1 281 8e-75
> Ahg322779 jgi|Araly1|322779|fgenesh1_pm.C_scaffold_5000323
Length=1215
Score = 1807 bits (978), Expect = 0.0
Identities = 1140/1215 (94%), Gaps = 24/1215 (2%)
Strand=Plus/Plus
Query 123 ATGGCAAACAGAGCAGACAACTCAATGCGTTGTTCAAATAGTAAGAAACCGAATGACGGT 182
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCAAACAGAGCAGACAACTCAATACGTTGTTCAAATAGTAAAAAACCGAATGACGGT 60
Query 183 ATGATGCTCGTAATATCGATTTTCGCGGGAATAGTTATCGGATTTTTATTAGGCATATCT 242
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 61 ATGATGCTCGTAATATCAATTTTTGCGGGAATAGTTATCGGATTTTTGTTAGGAATATCT 120
Query 243 TTCCCTACATTGTCACTAACTAAGATGAATTTTCCATCAAGCATTCTTCCTTCTGTTGCT 302
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 TTTCCTACATTGTCACTAACTAAGATGAATTTTCCATCAAGCATACTTCCTTCTGTTGCT 180
Query 303 ACTGTCTACATAGAAAATGAGAAACCGGAGAAATCATCTAAGACGAGTTCACAAAACGA- 361
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 ACTGTTTACATAGAAAACGAGAAACCGGAGAAATCATCTAAGACGAGTTCACAAAATGAG 240
Query 362 --AAGTGATGCATCACATCATCAT-A---A-------G----------ATTTGGGTTCCA 398
||||||||| ||||||||||| | | | ||||||||||||
Sbjct 241 TTTAGTGATGCAGCACATCATCATAAGGCATGTTTTTGTTTCTCCCTTATTTGGGTTCCA 300
Query 399 TCGAATCCTCGAGGTGCAGAGATGTTACCTCCAAGTTTTGTTGCAGCCGAATCGGATTTT 458
||||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 301 TCGAATCCTCGCGGTGCAGAGATGTTGCCTCCAAGTTTTGTTGCAACCGAATCAGATTTT 360
Query 459 TACTTACGAAGATTGTGGGGATTGCCTAAAGATGATTTACCAGTGGTGAAGCCTAAGTAT 518
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 TACTTACGAAGATTGTGGGGATTGCCTAAAGATGATTTACCAGTGGTGAAACCTAAGTAT 420
Query 519 CTTGTTGCTTTTACTGTTTCTTATGAACAAAGAAAAAACATCGATGCTTGTGTCAAAAAA 578
|| |||||||||||||||||||||||||| |||||||||| |||||||| |||| |||
Sbjct 421 CTAGTTGCTTTTACTGTTTCTTATGAACAGCGAAAAAACATTGATGCTTGCATCAAGAAA 480
Query 579 TTCTCAGATAACTTCACCATTGTTCTGTTTCATTACGATGGAAAAACCTCGGAGTATGAT 638
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 481 TTCTCAGATAACTTCACTATCGTTCTGTTTCATTACGATGGAAAAACCTCGGAATATGAT 540
Query 639 GAATTTGAATGGTCTAAACGGGCGATACACGTCAGTGTACCTAAGCAAACCAAGTGGTGG 698
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 GAATTTGAATGGTCTAAACGGGCGATACACGTGAGTGTACCTAAGCAAACCAAGTGGTGG 600
Query 699 TATGCTAAAAGGTTTCTGCATCCTGATATCATAGCACCATATGAATATATATTCATTTGG 758
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 TATGCTAAAAGGTTTCTGCATCCTGATATCATAGCACCGTATGAATATATATTCATTTGG 660
Query 759 GATGAAGATCTTGGCGTTGAAAACTTCGACGCAGAAGAGTACATCAAGATTGTGAATAAG 818
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 661 GATGAAGATCTTGGTGTTGAAAACTTCGACGCAGAAGAGTACATCGAGATTGTGAAGAAG 720
Query 819 CATGGTCTAGAAATATCGCAACCCGCTGTGGAATCAAGAAAATCAATCACATGGAAGATA 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CATGGTCTAGAAATATCGCAACCCGCTGTGGAATCAAGAAAATCAATCACATGGAAGATA 780
Query 879 ACAAAGAGAATACCCGGAATCGAAGTTCACAAAGAAGTCGAAGAGAAACCAGGCCGCTGC 938
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACAAAGAGAATACCCAGAAGCGAAGTTCACAAAGAAGTCGAAGAGAAACCAGGCCGCTGT 840
Query 939 AATGACCCTCACCTACCTCCTTGTGCAGGGTTTATAGAGATTATGGCTCCAGTTTTCTCT 998
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AATGACCCTCACCTACCTCCTTGTGCAGGGTTTATAGAGATTATGGCTCCAGTTTTCTCA 900
Query 999 AGAGAGGCATGGCGTTGTGTGTGGCATATGATTCAGAATGACTTGGTTCACGGTTGGGGT 1058
||||| ||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 901 AGAGATTCATGGCGCTGCGTGTGGCATATGATACAGAATGACTTGGTTCACGGTTGGGGT 960
Query 1059 CTTGACTTTGCGCTAAGAAAATGCGTCGAGCCTGCACATGAGAAGATTGGTGTTGTGGAT 1118
||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 961 CTTGACTTTGCGCTAAGAAAATGTGTTGAGCCTGCACATGAGAAGATTGGTATTGTGGAT 1020
Query 1119 TCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAGGGAACCGCGCAGGAA 1178
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1021 TCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGAAGCCAGGGAACTGCGCAGGAA 1080
Query 1179 GGGAAAACCGCGTTCCAAGGGGTAAGAGAGAGATGTAAACGGGAATGGACAATGTTTCAG 1238
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GGGAAATCCGCGTTCCAAGGGGTAAGAGAGAGATGTAAACGGGAATGGACAATGTTTCAG 1140
Query 1239 AAAAGAATGACCCGATCAGAGCAGAAGTATCTGAAAGAAATTGCATCTGCCTCTTCAAAC 1298
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAAAGAATGACGCGATCAGAGCAGAAGTATCTGAAAGAAATTGCATCTGCCTCTTCAAAC 1200
Query 1299 TCTACACGTACTTAA 1313
|||||| |||||||
Sbjct 1201 GCTACACTTACTTAA 1215
> Ahg920165 jgi|Araly1|920165|scaffold_101446.1
Length=1246
Score = 734 bits (397), Expect = 0.0
Identities = 747/914 (82%), Gaps = 31/914 (3%)
Strand=Plus/Plus
Query 384 AAGATTTGGGTTCCATCGAATCCTCGAGGTGCAGAGATG-TTACCTCCAAGTTTTGTTGC 442
||||||||||||||||||||||| ||||||||||| ||| | | |||| || | ||||
Sbjct 312 AAGATTTGGGTTCCATCGAATCCCCGAGGTGCAGAAATGCTGA-CTCCTGGTATCATTGC 370
Query 443 AGCCGAATCGGATTTTTACTTACGAAGA-TTGTGGGGATTGCCTAAAGATGAT-TTACCA 500
| | ||||| |||| ||| |||| ||| || |||||||| ||| |||| ||| || ||
Sbjct 371 ATCTGAATCAGATTACTACATACGCAGACTT-TGGGGATTACCTGAAGAGGATGTT-CC- 427
Query 501 GTGGTGAAGCCTAAGTATCTTGTTGCTTTTACTGTTTCTTATGAACAAAGAAA--AAACA 558
| |||||||| |||||||| ||||||||||||| || || | ||||| ||||
Sbjct 428 -T-GTGAAGCCAAAGTATCTCATTGCTTTTACTGTCGGTTTTGGTC--AGAAAGTAAACG 483
Query 559 TCGATGCTTGTGTCAAAAAATTCTCAGATA-ACTTCACCATTGTTCTGTTTCATTACGAT 617
| |||||||||||||| || || ||||| | | ||||| ||||| ||||| || ||||||
Sbjct 484 TTGATGCTTGTGTCAAGAAGTTTTCAGA-AGATTTCACAATTGTCCTGTTCCACTACGAT 542
Query 618 GGAAAAACCTCGGAGTATGATGAATTTGAATGGTCTAAACGGGCGATACACGTCAGTGTA 677
||| |||| | || | | ||||| |||||||| ||||| || |||||||| || ||
Sbjct 543 GGACGAACCACAGAATGGGGCGAATTCGAATGGTCCAAACGCGCAATACACGTGAGCGTG 602
Query 678 CCTAAGCAAACCAAGTGGTGGTATGCTAAAAGGTTTCTGCATCCTGATATCATAGCACCA 737
|| ||||||||||| ||||||||||||||| |||||||||||||||| ||| | |||||
Sbjct 603 CCAAAGCAAACCAAATGGTGGTATGCTAAACGGTTTCTGCATCCTGACATCGTGGCACCT 662
Query 738 TATGAATATATATTCATTTGGGATGAAGATCTTGGCGTTGAAAACTTCGACGCAGAAGAG 797
||||| ||| ||||||| ||||||||||| || ||| ||||||||||||| | |||||||
Sbjct 663 TATGACTATGTATTCATCTGGGATGAAGACCTCGGCCTTGAAAACTTCGATGTAGAAGAG 722
Query 798 TACATCAAGATTG-TGAATAAGCATGGTCTAGAAATATCGCAACCCGCTGTGGAATC-AA 855
|||||| || || | || || || |||||||| |||||||| || |||||||| || ||
Sbjct 723 TACATC-AGGCTGATTAAGAAACACGGTCTAGAGATATCGCAGCCTGCTGTGGAGTCTAA 781
Query 856 GAAAATCA-ATCACATGGAAGATAACAAAGAGAATACCCGGAA-TCGAAGTTCACAAAGA 913
|||| | ||||| ||| ||||||||||||||| | || || ||||||||||||||
Sbjct 782 -AAAA-AAGATCACGTGGGAGATAACAAAGAGAAAAACC-AAAGGAGAAGTTCACAAAGA 838
Query 914 AGTCGAA-GAGAAACCAGGCCGCTGCAATGACCCTCACCTACCTCCTTGTGCAGG-GTTT 971
| | || ||||||||||| || ||||| ||||||||| | ||||| ||||| || ||||
Sbjct 839 TG-CCAAGGAGAAACCAGGTCGATGCAACGACCCTCACTTGCCTCCATGTGC-GGCGTTT 896
Query 972 ATAGAGATTATGGCTCCAGTTTTCTCTAGAGAGGCATGGCGTTGTGTGTGGCATATGATT 1031
|||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct 897 ATAGAGATTATGGCTCCAGTATTCTCAAGAGATGCGTGGCGTTGTGTGTGGCATATGATT 956
Query 1032 CAGAATGACTTGGTTCACGGTTGGGGTCTTGACTTTGCGCTAAGAAAATGCGTCGAGCCT 1091
||||| |||||||||||||||||||||||||| ||||| || | |||||||||||||||
Sbjct 957 CAGAACGACTTGGTTCACGGTTGGGGTCTTGATTTTGCACTCCGTAAATGCGTCGAGCCT 1016
Query 1092 GCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCT 1151
|||||||||||||| || |||||||||||||||||||||||||||||| ||||||||
Sbjct 1017 GCACATGAGAAGATAGGAGTTGTGGATTCTCAATGGATCATTCATCAATCTCTTCCTTCT 1076
Query 1152 TTAGGCAGCCAGGGA-ACCGCGCAGGAAGGGAAAACCGCGTTCCAAGGGGTAAGAGAGAG 1210
||||||||||||||| | || || || || ||| | | || |||||||| ||||| ||
Sbjct 1077 TTAGGCAGCCAGGGAGAG-GCACAAGATGGTAAAGCAGGGTGGCAAGGGGTGAGAGACAG 1135
Query 1211 ATGTAAACGGGAATGGACAATGTTTCAGAAAA-GAATGACCCGATCAGAGCAGAAGTATC 1269
||||||||| ||||||||||||||||| || || || | | || ||| || ||||||
Sbjct 1136 ATGTAAACGAGAATGGACAATGTTTCA-AAGCCGATTGGCGAGTTCCGAGAAGCAGTATC 1194
Query 1270 TGAAAGAAATTGCA 1283
| || ||||| |||
Sbjct 1195 TCAAGGAAATCGCA 1208
> Ahg481676 jgi|Araly1|481676|fgenesh2_kg.4__736__AT2G28310.1
Length=1402
Score = 281 bits (152), Expect = 8e-75
Identities = 441/577 (76%), Gaps = 34/577 (6%)
Strand=Plus/Plus
Query 681 AAGCAAACCAAGTGGTGGTATGCTAAAAGGTTTCTGCATCCTGATATCATAG-CACCATA 739
|||||||| || |||||||| || || |||||| | ||||||||| | | | || | ||
Sbjct 715 AAGCAAACAAAATGGTGGTACGCGAAGAGGTTTTTACATCCTGATGTTGT-GTCAGCTTA 773
Query 740 TGAATATATATTCATTTGGGATGAAGATCTTGGCGTTGAAAACTTCGACGCAGA-AGAGT 798
|| || ||||| || ||||||||||||||||| || || | ||| | || || | |||
Sbjct 774 CGAGTACATATTTATATGGGATGAAGATCTTGGAGTGGAGCATTTCAATGCGGATA-AGT 832
Query 799 ACATCAAGATT-GTGAATAAGCATGGTCTAGAAATATCGCAACC-CGCTGTGGAATCAAG 856
|||| || || || || ||||||||| |||| || || ||||| || | || | |
Sbjct 833 ACATTGAG-TTAGTTAAGAAGCATGGTTTAGAGATTTCTCAACCAGGC-CTAGAGCCCA- 889
Query 857 AAAAT-CAATCACAT-GGAAGATAACAAAGAGAATACCCGG-AATCGA-A-GTTCACAAA 911
| ||| | |||||| |||| || ||||| || | | || | ||| | || ||||||
Sbjct 890 ACAATGGACTCACATGGGAA-ATGACAAAAAGGAGA---GGTGACCGAGAGGTCCACAAA 945
Query 912 GAAGT-CG-AAGAGAAACCAGGCCGCTGCAATGACCCTCACCTACCTCCTTGTGCAGGGT 969
| | | || |||| |||||||| | || || ||||| || ||||||| ||||| | |
Sbjct 946 G-A-TACGAAAGAAAAACCAGGATGGTGTAAAGACCCACATTTACCTCCATGTGCCGCAT 1003
Query 970 TTATAGAGATTATGGCTCCAGT-TTTCTCTAGAGAGGCATGGCGTTGTGTGTGGCATATG 1028
|| | || || ||||| || || ||| ||| |||| |||||||| |||||||||||||||
Sbjct 1004 TTGTTGAAATAATGGCGCCCGTATTT-TCTCGAGAAGCATGGCGATGTGTGTGGCATATG 1062
Query 1029 ATTCAGAATGACT-TGGTTCACGGTTGGGGTCTTGACTTTGCGCTAAGAAAATGCGTCGA 1087
|||||||| || | ||||||| || |||||||| ||||||||||| |||| |||||| ||
Sbjct 1063 ATTCAGAACGA-TCTGGTTCATGGATGGGGTCTCGACTTTGCGCTTAGAAGATGCGTTGA 1121
Query 1088 GCCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAA-GATTC 1146
||||| ||||||||||||||||||||||||||||||||||| || ||| ||| ||| |
Sbjct 1122 ACCTGCTCATGAGAAGATTGGTGTTGTGGATTCTCAATGGATAATACAT-AAAGTGATAC 1180
Query 1147 CTTCT-TTAGGCAGCCAGGGAACCGCGCAG-GAAGGGAAAACCGCGTTC-CAAGGGGTAA 1203
| || || || || || |||| | ||| ||| |||||| | | | ||||| || |
Sbjct 1181 CGTCACTT-GGAAGTCAAGGAAA-GT-CAGAGAATGGAAAAGCTCCATGGCAAGGAGTGA 1237
Query 1204 GAGAGAGATGTAAACGGGAATGGACAATGTTTCAGAA 1240
|||||||||| ||| |||||||||||||||||||||
Sbjct 1238 GAGAGAGATGCAAAATGGAATGGACAATGTTTCAGAA 1274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57363908970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5