BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26470.1
Length=1454
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888852 jgi|Araly1|888852|Al_scaffold_0007_838 1088 0.0
Ahg353574 jgi|Araly1|353574|fgenesh1_pg.C_scaffold_7000747 536 2e-151
> Ahg888852 jgi|Araly1|888852|Al_scaffold_0007_838
Length=678
Score = 1088 bits (589), Expect = 0.0
Identities = 651/681 (96%), Gaps = 3/681 (0%)
Strand=Plus/Plus
Query 47 ATGGCCGTCACTGATTATTTCGCCGGTGAGATAGCGACGGAGCTTTTGAAGCAGCTCTTT 106
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCGTCACTGATTATTTCGCCGGTGAAATAGCGACGGAGCTTTTGAAGCAGCTCTTT 60
Query 107 CTGATATCTGCGAGAGCAGGCCGGTACAAAAACACAGCCGACAACCTCAGCACCTTGATC 166
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 61 CTGATATCTGCGAGAGCAGGCCGGTATAAAAACACTGCCGACAACCTCAGCACTTTGATT 120
Query 167 GAGAACATTCAACCGACGATCAAAGAGATCCAGTACAGTGGAGTTGAGCTGCCTGCTCAC 226
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGAACATTCAACCAACGATCAAAGAGATCCAGTACAGTGGAGTTGAGCTGCCTGCTCAC 180
Query 227 CGCCAGGCTCAAATCCGTATACTCTTTGAGTCTCTAGAGAAGGGCAAGAAACTCATGGAC 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGCCAGGCTCAAATCCGTATACTCTTTGAGTCTCTAGAGAAGGGCAAGAAACTCATGGAC 240
Query 287 AAATTCTTAACATGCAATCGTTGGAATATGATTCGACAGTTATATCTCATGAAGAAAATG 346
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAATTCTTAACATGCAATCGCTGGAATATGATTCGACAGTTATATCTCATGAAGAAAATG 300
Query 347 GAGAAGCTAGAGAAGACCCTCTCTGATTTCTTTAGGGCTTCCATTTTGACACACATCCTT 406
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGAAGCTAGAGAAGACTCTCTCTGATTTCTTTAGGGCTTCCATTTTGACACACATCCTC 360
Query 407 GCCGATCTTCATCTTCTCCGGGCCAATTCTGATGAACGTTCCCATGAGCACGTCACATCA 466
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCCGATCTTCATCTTCTACGAGCCAATTCTGATGAACGTTCCCATGAGCACGTCACATCA 420
Query 467 ACCAAAGGGTGTGACTACGACGGACTTGGCTCAATTCAGTACCAGCACATCCAGCCTAAC 526
||||||||||||||||| | | ||||||||||||||||||||||||| ||||||| |||
Sbjct 421 ACCAAAGGGTGTGACTATG--G-ACTTGGCTCAATTCAGTACCAGCACCTCCAGCCCAAC 477
Query 527 CTAGACATGGATATGCGGGTCACCATTTTGGAGGCTGAATTCCGCACCTTCTCCAACAAC 586
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 478 CTAGACATGGATATGCGGGTCACCATTTTGGAGACTGAATTCCGCACCTTCTCCAACAAC 537
Query 587 GTCATCAACAACATGCTTGCGATGAAGCGAGCGCAAGATGTCTTACTACGAGCCAACGGC 646
|||| |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 538 GTCACCAACAACATGCTGGCGATGAAGCGAGCGCAGGATGTGTTACTACGAGCCAACGGC 597
Query 647 TTTGACCCCGAGACCCTCCTACCGATGATGTCTCCTCCTGCAGCCTCCATGAATCCTCCT 706
||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 598 ATTGACCCTGAGACCCTCCTACCGATGGTGTCTCGTCCTGCAGCCTCCATGAATCCTCCT 657
Query 707 GCTTGACCACATACGACTTAG 727
|||| | || |||||||||||
Sbjct 658 GCTTTAGCAGATACGACTTAG 678
> Ahg353574 jgi|Araly1|353574|fgenesh1_pg.C_scaffold_7000747
Length=2307
Score = 536 bits (290), Expect = 2e-151
Identities = 328/347 (95%), Gaps = 0/347 (0%)
Strand=Plus/Minus
Query 1085 TCAAGAGCTATGTCTTTCAGGTTGTCTATCTGCTCTCTCACACACCTCTTTCTGCATCCG 1144
|||||||||||| |||||||||| ||| ||||||||||||||||||| ||||||||||||
Sbjct 2307 TCAAGAGCTATGACTTTCAGGTTCTCTCTCTGCTCTCTCACACACCTTTTTCTGCATCCG 2248
Query 1145 GGAACTGAAGAACGAAGCGCACAAGTCGGGGAAAGGCGGGAAATTGAGTGTTGATCCACA 1204
|||||||||||| | || ||||| |||||||||||||||||||||||| |||||||||||
Sbjct 2247 GGAACTGAAGAAAGCAGAGCACACGTCGGGGAAAGGCGGGAAATTGAGCGTTGATCCACA 2188
Query 1205 AAACATTGTTTCCCAAGGTTTCTCTGACATCAATGCTTTCTTCCTAGATCTCTTCTTCTT 1264
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2187 AAAGTTTGTTTCCCAAGGTTTCTCTGACATCAATGCTTTCTTCCTAGATCTCTTCGTCTT 2128
Query 1265 TTTGCTTATTGCTGCAAGAAAAACTTCATAATCTATGGCGCTAGTCTCGAGTTTTTCATC 1324
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2127 CTTGCTTATTGCTGCAAGAAAAACTTCATAATCTATGGCGCTAGTCTCGAGTTTTTCATC 2068
Query 1325 GCTATAAGGATCAAATAGAACATATTCATGGCTCCTGTTTACATACGCGAGAAGCGGCTG 1384
|| |||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2067 GCCATAAGGATCAAAAAGAACATATTCATGGCTCCTGTTTACATATGCGAGAAGTGGCTG 2008
Query 1385 AGACTTTTTACCATCTTCCACAAATGAAAGTGTTCCTCCTCTGGCCT 1431
|||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 2007 AGACTTTTTACCATCTTCCACAAATGAAAGCGTTCCTCCCCTGGCCT 1961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54392869860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5