BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26480.1
Length=2295
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353574 jgi|Araly1|353574|fgenesh1_pg.C_scaffold_7000747 3518 0.0
> Ahg353574 jgi|Araly1|353574|fgenesh1_pg.C_scaffold_7000747
Length=2307
Score = 3518 bits (1905), Expect = 0.0
Identities = 2181/2313 (94%), Gaps = 24/2313 (1%)
Strand=Plus/Plus
Query 1 ATGATTCGCGGCGGAAGAAACAACATTACTTCCGCTCCGGCGTTTTCGAAAGACGCAAAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATTCGCGGCGGAAGAAACAACATTACTTCCGCTCCGGCGTTTTCGAAAGACGCAAAG 60
Query 61 AAGCTTCTTTTATGCACAGCCAACACCGTCTCTGTTTACAGCGTCGCCACTGGCTTAAAG 120
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 AAGCTTCTTCTATGCACAGCCAACACCGTCTCTGTTTACCGCGTCGCCACTGGCTTAAAG 120
Query 121 ATTACTTCACTCGAGGATCATACAGCGCCTGTGACGTCTGTGATTGTTGATCCGTCTTCC 180
|||||||||||||||||||||||||| ||||||||| |||||||||||||| | | |||
Sbjct 121 ATTACTTCACTCGAGGATCATACAGCACCTGTGACGACTGTGATTGTTGATATGGCGTCC 180
Query 181 GACGAAACCGTCAGTTACTGTTGGACTTCGTCGCTCGATGGGAAAATTCGGATTTGGGAG 240
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AACGAGACCCACAGTTACTGTTGGACTTCGTCGCTCGATGGGAAAATTCGGATTTGGGAG 240
Query 241 TTCTCTGCGCCGAAGCTTTTGAAGATATTTGATACCCACCTTCCAATTCACTCTCTGGTG 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 TTCTCTGCGCCGAAGCTTTTGAAGACATTTGATACCCACCTTCCAATTCACTCTCTGGTG 300
Query 301 ATGATTCCAGCTCAAGTGTCACATTCCGTGATTGCTTATGTTTCGGTTGAGGACTATTCA 360
||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGATTCCATCTCACGTGTCACACTCCGTGATTGCTTATGTTTCGGTTGAGGACTATTCA 360
Query 361 AGTGTGTCCAAAGATTTGTTTGGACAAATCCGGAGATATGATCTCACTCAAGACCCTCTT 420
|||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 361 AGTGTGTCCAGTGATTTGTTTGGACAAATCCGGAGATATGATCTCACTGAAGAGCCTCTT 420
Query 421 CATAGTGGAGACACTTTGAAAGAGATGGAAGAACCAAAACCTATTGTTTTAAGTCCCTCT 480
| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 421 CCTAGTGGAGACATTTTGAAAGAGATGGAAGAACCAAAACCTATTGTTCTAAGTCCCT-T 479
Query 481 -GGAGAGTTTTTCGGCGTCTGTCATAACTGCAGTATACATATATGGAATG-------T-- 530
||||| |||||||||||| ||| || |||| ||||||||||||||||| |
Sbjct 480 AGGAGATTTTTTCGGCGTCAGTCGTAGTTGCAATATACATATATGGAATGCCTCTCTTGG 539
Query 531 GGCATCAGAGCACCTCATGCCAAAGGAGACGACATTACATCATACAGAGTTGATTACTGT 590
|||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 GGCATCAGAGCATCTCAAGCCAAAGGAGACGACATTACATCACACAGAGTTGATTACTGT 599
Query 591 TTTTGCTTTCCATCCCAATCAGAGAATATTAGCAGCCGGTGATGTAACAGGAAGAGTGTT 650
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 TTTTGCTTTCCATCCCAATCAGAGAATATTAGCAGCCGGTGATGTAAAAGGAAGAGTGTT 659
Query 651 AATTTGGAAGGATAATGGTATTGGAGAATTTACTTCAGTGAAAACTGAAGATGATACTGA 710
|||||||||||||| ||||| ||||||| ||||||||||||||| ||||| |||| ||||
Sbjct 660 AATTTGGAAGGATATTGGTAATGGAGAACTTACTTCAGTGAAAAGTGAAGGTGATCCTGA 719
Query 711 ATCTTGCACTACTTTCAACTGGCACAGCGCTGAAGTAACCGTCCTTAATTTCTCTTCAGA 770
|||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 720 ATCTTGCACTGCATTCAACTGGCACTCCGCTGAAGTAACCGTCCTTAATTTCTCTTCAGA 779
Query 771 TGGAGCACTTTTGTATTCTGGGGTAAAGGCAGGTGATTTTGTTGTTTGGGAGCTAGGTAC 830
||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 780 TGGAGCACTGTTGTATTCTGGGGTAAAGGAAGGTGTTTTTGTTGTTTGGGAGCTAGATAC 839
Query 831 AGGGAAGAAGCAACTTTTGCCAAAGATTGGATCTCCC-TTGTTGTATTTCATCTTCTCTT 889
| |||| |||||||||||||||||||||||||| ||| |||||||||||||||| |||||
Sbjct 840 AAGGAAAAAGCAACTTTTGCCAAAGATTGGATC-CCCGTTGTTGTATTTCATCTCCTCTT 898
Query 890 CAGATTCAACTCTTTCTTCTGTGATTTGTGCAGATAATCAAATTCATCTTCTT-AAAATG 948
||||| |||||||||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 899 CAGATCCAACTCTTTCTTCTGTGATTTGTGCAGATAATCAGATTCATCTT-TTAAAAATG 957
Query 949 CCTTCCATGGAGATATTGAGAACGATATCTGGAATCAAGCCTCCGACACCAGAGCGTCAC 1008
||||||||||||||| ||||||||||||||||||||||||||| || | |||||||||||
Sbjct 958 CCTTCCATGGAGATACTGAGAACGATATCTGGAATCAAGCCTCGGAGATCAGAGCGTCAC 1017
Query 1009 GGGTTTATATGCTACGTCAAAACGCGGGATATATGCCTCACCAGAACTGTATCCATTGAT 1068
||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1018 GGGTTTATATGCTACGTTAAAACGAGGGATATATGCCTCACCAGAACTGTGTCCATTGAT 1077
Query 1069 CGTTCTTCCGGTATAGCTGCTTTCTGCACAGCGAATCATCGTGTTCAACTCTACAACCTT 1128
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1078 CGTTCTTCCGGTATAGCTGCTTTCTGTGCAGAGAATCATCGTGTTCAACTCTACAACCTT 1137
Query 1129 TTAAGTGACCATGACATTTCAGAGGTTCAAATTTGC----G--ATCATCATCCAGACGAT 1182
|||||||||||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 1138 TTAAGTGACCATGAAATTTCAGAGGTTCAAATTTGCGAGAGAAATCATCATCCAGACG-- 1195
Query 1183 GATGATCAAGTCCGGGTTCTCGTGACTGCGGTTGCTCTCTCTCGGAATGGCTCAGTAATG 1242
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1196 G-TGATGAAGTCCGGGTTCTCGTGACTGCGGTTGCTCTCTCTCGGAATGGCTCAGTGATG 1254
Query 1243 ACTACAGCTGAGGCCAGATTTGCTGCAAGCAATTTCAGTGAAGGCATAGTTTCTCTCAAG 1302
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1255 ACTACAGCTGATGCCAGATTTGCTGCAAGCAATTTCAGTGAAGGCTTAGTTTCTCTCAAG 1314
Query 1303 TTTTGGGTATTTGTACCGGACAGCAAAACTTTCAGCTTATCGACAGTCATAAATCAACCT 1362
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 TTTTGGGTGTTTGTACCGGACAGCAAAACTTTCAGCTTATCGACAGTCATAAATCAACCT 1374
Query 1363 CACAGGGAAGCTGCAATTACAGCCATTGCCCTTAACCCCGCCCGTTCCATGGCTGTTAGT 1422
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 CACAGGGAAGCTGCTATCACAGCCATTGCCCTTAACCCCGCCCGTTCCATGGCTGTTAGT 1434
Query 1423 ATATCTTCTGCTGGGGACTTCAAGATTTGGGTTTGCAGTAGCGACAAGAATCTGACACCT 1482
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1435 ATATCTTCTGCTGGGGACTTCAAGATTTGGGTTTGCAATAGCGACAAGAATCTGACACCT 1494
Query 1483 GAGGACTCAAACTGGATTTGTCATGGAGTTGGCTCTTATAAGAGAACGCCAATAACAGCT 1542
||||| ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1495 GAGGATTCAAACTGGATATGTCATGGAGATGGCTCTTACAAGAGAACGCCAATAACAGCT 1554
Query 1543 GCTGTTTTTTCCGGGGATGGTTCTTGTCTGGCTCTTGCGGCTAAAACAGTTATTACGATC 1602
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1555 GCTGTTTTTTCCGGGGATGGTTCTTGTCTGGCTATTGCGGCTAAAACAGTTATTACGATC 1614
Query 1603 TGGCACCCGTTAAAGAACGAACTCCTGTATGTAGTTGGAAAGGCAAATGCGCCAATTATG 1662
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1615 TGGCACCCGTTAAAGAACGAACTCTTGTATGTAGTTGGAAAGGCAAATGCGACAATTATG 1674
Query 1663 GAACTCTCATTCACTGGAGGAGGCTTCCTTATTGCTGCATCCCATGGTTCCACACCGCAC 1722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 GAACTCTCATTCACTGGAGGAGGCTTCCTTATTGCTGCATCCCATGGTTCCACACCGCAC 1734
Query 1723 TTATCTGTCTGGGATCTGATGACGTTCTGCTTATCATGGTCATATAGATTATACATAGAA 1782
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1735 TTATCTGTCTGGGATTTGATGACGTTCTGCTTATCATGGTCTTATAGATTATACATAGAA 1794
Query 1783 GCCATTGCTACTGAAGTGGACTCACCATACTTTGCAGTTTTAACATGGCTTCCAGAATCT 1842
|||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 1795 GCCATTGCCACTGAAGTGGGCTCGCCATACTTTGCAGTATTAACATGGCTTCCAGAATCT 1854
Query 1843 GATAGGTTGGTAAAATCTAACGAACAGATATTCCGCGGGAAAGATGGTGCTATCCTCTTG 1902
|||||||||||||||||||||| ||| || ||| ||||||||||||||||||| ||||||
Sbjct 1855 GATAGGTTGGTAAAATCTAACGGACAAATGTTCTGCGGGAAAGATGGTGCTATTCTCTTG 1914
Query 1903 TTTGATGGGTCAGGCCCTAAACCAGTAGCTATTTGGACTGTAATGAAGGCCAGAGGAGGA 1962
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1915 TTTGATGGGTCAGGCCCTAAACCAGTAGCTATTTGGACTGTAATGAAGGCCAGGGGAGGA 1974
Query 1963 ACACTTTCATTTGTGGAAGATGGTAAAAAGTCTCAGCCGCTTCTCGCGTATGTAAACAGG 2022
|| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1975 ACGCTTTCATTTGTGGAAGATGGTAAAAAGTCTCAGCCACTTCTCGCATATGTAAACAGG 2034
Query 2023 AGCCATGAATATGTTCTATTTGATCCTTATAGCGATGAAAAACTCGAGACTAGCGCCATA 2082
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 2035 AGCCATGAATATGTTCTTTTTGATCCTTATGGCGATGAAAAACTCGAGACTAGCGCCATA 2094
Query 2083 GATTATGAAGTTTTTCTTGCAGCAATAAGCAAAAAGAAGAAGAGATCTAGGAAGAAAGCA 2142
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 2095 GATTATGAAGTTTTTCTTGCAGCAATAAGCAAGAAGACGAAGAGATCTAGGAAGAAAGCA 2154
Query 2143 TTGATGTCAGAGAAACCTTGGGAAACAATGTTTTGTGGATCAACACTCAATTTCCCGCCT 2202
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 2155 TTGATGTCAGAGAAACCTTGGGAAACAAACTTTTGTGGATCAACGCTCAATTTCCCGCCT 2214
Query 2203 TTCCCCGACTTGTGCGCTTCGTTCTTCAGTTCCCGGATGCAGAAAGAGGTGTGTGAGAGA 2262
||||||||| ||||| || | |||||||||||||||||||||||| ||||||||||||||
Sbjct 2215 TTCCCCGACGTGTGCTCTGCTTTCTTCAGTTCCCGGATGCAGAAAAAGGTGTGTGAGAGA 2274
Query 2263 GCAGATAGACAACCTGAAAGACATAGCTCTTGA 2295
||||| ||| |||||||||| ||||||||||||
Sbjct 2275 GCAGAGAGAGAACCTGAAAGTCATAGCTCTTGA 2307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86426765905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5