BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26500.1
Length=1522
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484411 jgi|Araly1|484411|fgenesh2_kg.5__403__AT3G26500.1 2161 0.0
> Ahg484411 jgi|Araly1|484411|fgenesh2_kg.5__403__AT3G26500.1
Length=1449
Score = 2161 bits (1170), Expect = 0.0
Identities = 1358/1451 (94%), Gaps = 4/1451 (0%)
Strand=Plus/Plus
Query 1 GACTAATAATCACAAAAACCATGGATCACGATCTCGACAAATTCCCTTTACTCTCTTACG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GACTAATAATCACAAAAACCATGGATCACGATCTCGACAAATTCCCTTTACTCTCTTATG 60
Query 61 TCCTTCATCAACATGACTCCAATCTCCACGCGCCGCCGTCTATGGCCGCGCAAGAAACTC 120
||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 TCCTTCACCAACTTGACTCCAATCTCCACGCGCCGCCGTCTATGGCTGCGCAAGAAACTC 120
Query 121 TCCTTCCTTCTTTTCCTCTTCTCTCCAATCCAGAAATCATGTCTATGTT-GACTCAATCC 179
|||||||||||||||||||||||||| |||| || |||||||| | || ||||||||||
Sbjct 121 TCCTTCCTTCTTTTCCTCTTCTCTCCGATCCTCAAGTCATGTCT-TCTTTGACTCAATCC 179
Query 180 ATCCCCACAACGATCACACAGACGCTTTTCGTCTTCAACTCTCTCGGCTCTCGACCTGAT 239
|||||||| || ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 180 ATCCCCACCACCATCACACAGACGCTTTTCGTCTTCAACTCTCTCGGCTCTCGTCCCGAT 239
Query 240 CCCTTAGCGGTTTCCTCTGCTCGATTCAAGATCGCTCAAATTATGGATTCGCTCTCGCCG 299
||||| ||||| ||||||||||| | |||||||||||| |||||||||||||||||||||
Sbjct 240 CCCTTGGCGGTCTCCTCTGCTCGGTCCAAGATCGCTCAGATTATGGATTCGCTCTCGCCG 299
Query 300 GAGGAAGCAGCGAAGGAGTCGGAGATTTATGCCGGGGTTGTGCGGTTGGATGAAGTGCAC 359
|| ||||| || ||||||||||||||||| |||| ||||||||||||||||| || |||
Sbjct 300 GAAGAAGCGGCAAAGGAGTCGGAGATTTACACCGGAGTTGTGCGGTTGGATGAGGTACAC 359
Query 360 GATAGTTACGAGAAGAAGTTGAAGGATACAGAGGAGGAGCTTTCTAGGGTTTATTCTACG 419
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 360 GATAGTTACGAGAAGAAGTTGAAGGATATAGAGGAGGAGCTTTCTAGGGTTTATGCTACG 419
Query 420 GAGGTGGAATCGATGTTGAGAAGCGGTGAAGAAGTGAACGAGAAGGTTCTTGCGGTGCTC 479
||||| |||||| ||||||||||||| ||||||||||| ||| ||||| |||| ||||||
Sbjct 420 GAGGTAGAATCGTTGTTGAGAAGCGGCGAAGAAGTGAATGAGGAGGTTGTTGCTGTGCTC 479
Query 480 AAGGAGGCGGAATCCGGCGGAACCGTTGAGAGGATTGATCTCTCCAGCCAAGAACTTAAG 539
|||| |||||||||||||| || | ||||||||| |||||||| ||||||||||||||
Sbjct 480 AAGGTGGCGGAATCCGGCGAAATCAATGAGAGGATCGATCTCTCTGGCCAAGAACTTAAG 539
Query 540 CTTATCCCTGAAGCTTTTTGGAAAGTAGTTGGCTTAGTATACTTGAATCTCTCTGGCAAT 599
||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 540 CTTCTCCCTGAAGCGTTTTGGAAAGTAGTTGGCTTAGTTTACTTGAATCTCTCTGGCAAT 599
Query 600 GACTTGACGTTTATACCGGATGCAATCTCGAAACTCAAGAAGCTAGAAGAGCTCGATGTA 659
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GACTTGACGGTTATACCTGATGCAATCTCGAAACTCAAGAAGCTAGAAGAGCTCGATGTA 659
Query 660 TCTTCAAATTCT-TTGGAATCTCTTCCTGACTCTATAGGGATGTTGCTTAACCTTAGAAT 718
|||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 660 TCTTCAAATTCTCTTG-AATCTCTTCCTGACTCTATAGGAATGTTGCTTAACCTTAGGAT 718
Query 719 CCTTAATGTGAATGCGAACAATCTAACCGCACTCCCTGAGAGCATCGCGCATTGCAGGTC 778
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CCTTAATGTGAATGGGAACAATCTAACCGCACTCCCTGAGAGCATCGCGCATTGCAGGTC 778
Query 779 ACTAGTTGAGTTAGATGCAAGCTACAACAACTTGACTTCATTACCTACAAACATTGGATA 838
||| ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 779 ACTGGTTGAGTTAGATGCAAGCTACAACAACTTGACTACATTGCCTACAAATATTGGATA 838
Query 839 CGGATTACAAAACCTCGAGAGATTATCGATCCAGCTGAACAAACTCCGTTACTTTCCAGG 898
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CGGATTACAGAACCTGGAGAGATTATCGATCCAGCTGAACAAACTCCGTTACTTTCCAGG 898
Query 899 TTCGATAAGTGAAATGTATAATCTAAAGTATCTTGACGCACACATGAACGAGATCCACGG 958
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 899 TTCGATAAGCGAAATGTATAATCTGAAGTATCTTGACGCACACATGAACGAGATCCACGG 958
Query 959 GATACCAAACTCGATCGGGAGACTAACGAAACTTGAGGTTCTAAACCTAAGCAGCAATTT 1018
|||||| || || |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 959 GATACCGAATTCTATCGGGAGGCTAACGAAACTCGAGGTTCTAAACCTAAGCAGCAATTT 1018
Query 1019 CAACAACTTGATGGGTGTCCCTGACACTATCACTGATCTAACTAACCTGAGGGAGCTTGA 1078
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1019 CAACAACTTGATGGGTGTTCCTGACACAATCACTGATCTAACTAACCTGAGGGAGCTTGA 1078
Query 1079 TCTAAGCAACAACCAAATCCAAGCTATACCAGACTCATTTTATAGGCTGAGGAAGCTAGA 1138
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1079 TCTAAGCAACAACCAAATCCAAGCGATACCAGACTCATTTTACAGGCTGAGGAAGCTGGA 1138
Query 1139 GAAACTGAACTTGGACCAAAACCCGCTTGAGATCCCATCTCAAGAAGTGGCTACTCAAGG 1198
|||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1139 GAAACTGAACTTGGACCAGAACCCGCTTGAGATCCCGTCTCAAGAAGTGGCTAGTCAAGG 1198
Query 1199 AGCTGAAGTTGTTAGAGAGTTTATGAGGAAGAGATGGGGTGATATCATGGCAGAGCAGCA 1258
|||||||| |||||||||||||||| |||||||||| |||| || ||||||||||||||
Sbjct 1199 AGCTGAAGCGGTTAGAGAGTTTATGAAGAAGAGATGGAGTGAGATTATGGCAGAGCAGCA 1258
Query 1259 ACAGAGGATTGGCGTTGAGGCTGAGCGACATGGAGATGAAAACGGGTGGGTCTATTGGGG 1318
||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||
Sbjct 1259 ACAGAGGATTGGCGTTGAGGCTGAGAGACATGGAAATGAAACCGGGTGGGTCTATTGGGG 1318
Query 1319 AACCTCCATGGTTACTAATCTTGTTTCTGGAGTGACCCATACCATTGGATTTGGAGGAGC 1378
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct 1319 AACCTCCATGGTTACTAATCTTGTTTATGGAGTGACACAGACCATTGGATTTGGAGGAGC 1378
Query 1379 AACTAGCGATGGTGGAGATAAGAAACCGGGAGACTCGTACTTTTATCACCAAATCTGACT 1438
| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1379 ATCTAGTGATGGTGGAGATAAGAAACCTGGAGACTCGTATTTTTATCACCAAATCTGACT 1438
Query 1439 TCTGCTAAATT 1449
|| ||||||||
Sbjct 1439 TCAGCTAAATT 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56983006520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5