BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26510.5
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484412 jgi|Araly1|484412|fgenesh2_kg.5__404__AT3G26510.3 845 0.0
> Ahg484412 jgi|Araly1|484412|fgenesh2_kg.5__404__AT3G26510.3
Length=1015
Score = 845 bits (457), Expect = 0.0
Identities = 621/694 (89%), Gaps = 36/694 (5%)
Strand=Plus/Plus
Query 329 GAGTTAGCGTCGAAGATGGCGGAGA--T---GT-GCGGCGGC-GT--CGGCGGATCTATA 379
||||||||||||||||||||||||| | || |||||||| || ||||||||||| |
Sbjct 215 GAGTTAGCGTCGAAGATGGCGGAGATGTGCGGTGGCGGCGGCGGTGGCGGCGGATCTACA 274
Query 380 ACCGTAACGATCCGATGTCAGCTTCCGACGGAAGATCTCGACGCGCTCGTTTCAATTACT 439
|||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||
Sbjct 275 ACCGTAACGATCCGATGTCAACTTCCGATGGAAGATCTCGATGCGCTCGTTTCAATTACT 334
Query 440 TCCGATGAAGATCTAGTGAATCTAATCGAAGAGTACGATCTCGTTTCCTCTTCATCTCCG 499
|||||||||||||||| |||||||||||||||||||||||||||||| || || ||||||
Sbjct 335 TCCGATGAAGATCTAGCGAATCTAATCGAAGAGTACGATCTCGTTTCTTCATCTTCTCCG 394
Query 500 ATGAAAATCAGAGTCTTCTTAAATCCACCAAAATCCGCCGCCGGATCTAAAAAATCTCCT 559
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 395 ATGAAAATCAGAGTCTTCTTAAATCCACCAAAATCCGCCGTCGGATCTAGAAAATCACCG 454
Query 560 CCTCCGTTAGCGTTACCGTCATCAACCACCACGTCATCATCTTCCACAACTTCCTCTACT 619
||||||||||||||||||| | | ||||||||||||||||||| || ||||||||| ||
Sbjct 455 CCTCCGTTAGCGTTACCGT--T-ATCCACCACGTCATCATCTTCTACTACTTCCTCTTCT 511
Query 620 TCATCAAGTCCTAGATCTCCGTC-TCTATCAAAACCACCGCTACCTCCGTCTCCACCGAG 678
||||||||||||||||||||||| | |||| ||||||||||| |||||||| || |||||
Sbjct 512 TCATCAAGTCCTAGATCTCCGTCGT-TATCTAAACCACCGCTTCCTCCGTCACCGCCGAG 570
Query 679 AATAACGACGGTTACGAAGAATCCGTGTTATGGTTGTTATGTTCACCGTAATTCCAGAAA 738
||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 571 AATGACGACGGTTACGAAGAATCCATGTTACGGTTGTTATGTTCACCGTAATTCGAGAAA 630
Query 739 TATCTACCTTGTTCACAACGGCAATCACTGGCAATAACGTGAAGAATCTTCG-AATATAC 797
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 631 TATCTACCTTGTTCACAACGGCAATCACTGGCAATAACGTGAAGAATCGTCGGAATATAC 690
Query 798 GATTaaaaaaaaaaaGAATCTTCGttttttttttCTAATGTAAAAAAGAGCGAGAGATTA 857
||||||||||||| | ||||||||| |||| | ||||||||| ||||||||||| |
Sbjct 691 AATTAAAAAAAAAA-GTATCTTCGTTGTTTTATAA-AATGTAAAA--GAGCGAGAGAT-A 745
Query 858 TAATAGAAGGGTGTACGTGATCTAACCATCGCCATTAATGAAATCATCCCAAAAGCTTTT 917
|||||||||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 746 TAATAGAAGGGTGTACGTGACCTGACCATCGCCATTAATGAAATCATCCCAAA---TTT- 801
Query 918 TATTCTCTGTTTGTTGGTGATGATGATGAATTGGGTAATTTAATCTATCCTTGTAAAATT 977
||| | | ||||||||||||||||||||||||| | ||||||| |||||||
Sbjct 802 --------GTT-G--G-TGATGATGATGAATTGGGTAATTTACTTTATCCTTATAAAATT 849
Query 978 CGAGCAATGGCGTGATCGATTTTTCTCGTTTATG 1011
||||||| ||||||||||||||||||||||||||
Sbjct 850 CGAGCAAAGGCGTGATCGATTTTTCTCGTTTATG 883
Score = 309 bits (167), Expect = 4e-83
Identities = 205/223 (92%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 2 GCTTGCACAGAACAAACCAACCTTCTAGATTCTT-CTCCTTCCTTCTTCAACTCTCTCTC 60
|||||||||||||||||||| |||||||| |||| || |||||||||||| |||| ||||
Sbjct 1 GCTTGCACAGAACAAACCAATCTTCTAGAATCTTCCTTCTTCCTTCTTCATCTCT-TCTC 59
Query 61 ACTTCTCCAGATATGGTTACATCTCCGACGAACTCAACAATCAAATTTCTCTGTAGCTAT 120
| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TC-TCTACAGTTATGGTTGCATCTCCGACGAACTCAACAATCAAATTTCTCTGTAGCTAT 118
Query 121 GGCGGCAAAATCCTACCTCGTTATCCCGACGGTAAACTCCGTTACAACGGTGGTCACACT 180
|||||||||||| |||||||||||||||| || |||||||||||||||| |||||||||
Sbjct 119 GGCGGCAAAATCTTACCTCGTTATCCCGATGGCAAACTCCGTTACAACGACGGTCACACT 178
Query 181 CGCGTCCTCGCCGTTCCTCGCTCCGTCTCATTTTCCG-GTTAG 222
|||||||||||||||||||||||| |||||||||||| |||||
Sbjct 179 CGCGTCCTCGCCGTTCCTCGCTCCATCTCATTTTCCGAGTTAG 221
Score = 110 bits (59), Expect = 5e-23
Identities = 72/78 (92%), Gaps = 2/78 (3%)
Strand=Plus/Plus
Query 1576 CATTTTTCAAAGAAGTACTTGCATAT-GAAGTTTTAGCAAAGAAAATATGAAACACATAT 1634
||||||||||| |||||||||| ||| ||| | |||||||||||||| ||||||||||||
Sbjct 939 CATTTTTCAAATAAGTACTTGCCTATCGAA-TATTAGCAAAGAAAATGTGAAACACATAT 997
Query 1635 GATGTAAGATAGAAGTGC 1652
||||||||||||||||||
Sbjct 998 GATGTAAGATAGAAGTGC 1015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63572618905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5