BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G26560.1

Length=3778
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949423 jgi|Araly1|949423|scaffold_801310.1                        342    9e-93
  Ahg347015 jgi|Araly1|347015|fgenesh1_pg.C_scaffold_5000407           289    1e-76


> Ahg949423 jgi|Araly1|949423|scaffold_801310.1
Length=328

 Score =  342 bits (185),  Expect = 9e-93
 Identities = 255/287 (89%), Gaps = 11/287 (4%)
 Strand=Plus/Plus

Query  2013  CTGATGAAACGTAGACTCGACCTTCGTCTGATAGTCACGTCTGCCACATTGGATGCAGAG  2072
             |||||||||||||| || ||||||| |||||||||||| |||||||||||||||||||||
Sbjct  18    CTGATGAAACGTAGGCTTGACCTTCATCTGATAGTCACATCTGCCACATTGGATGCAGAG  77

Query  2073  AAGTTCTCTGGGTACTTCTTTAACTGCAACATTTTTACCATTCCTGGAAGAACATTTCCT  2132
             |||||||||  ||| ||||| |||||||||||||||||||||||| ||||||| ||||||
Sbjct  78    AAGTTCTCTAAGTATTTCTTCAACTGCAACATTTTTACCATTCCTAGAAGAACCTTTCCT  137

Query  2133  GTTGAGATACTATATACCAAACAGCCAGAAACAGATTACTTGGATGCCGCTCTGATCACA  2192
             ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct  138   GTTGAGATACTATATACCAAACAGCCAGAAACAGATTACTTGGATGCAGCTTTGATCACA  197

Query  2193  GTCCTTCAGATTCACTTGACTGAACCTGAGGGTGATATTCTGGTCTTTTTGACGGGACAG  2252
             |||||||||||||||||||  |     | | | |  ||||| ||||||| || ||| |||
Sbjct  198   GTCCTTCAGATTCACTTGA--G-----G-GTG-GC-ATTCTCGTCTTTT-GATGGGGCAG  246

Query  2253  GAAGAAATCGATTCTGCCTGCCAGTCTCTGTACGAGAGGATGAAAGG  2299
             ||||| ||||||||||| ||||||||||||| |||||| ||||||||
Sbjct  247   GAAGAGATCGATTCTGCATGCCAGTCTCTGTGCGAGAGAATGAAAGG  293


> Ahg347015 jgi|Araly1|347015|fgenesh1_pg.C_scaffold_5000407
Length=828

 Score =  289 bits (156),  Expect = 1e-76
 Identities = 170/177 (96%), Gaps = 0/177 (0%)
 Strand=Plus/Plus

Query  3384  TACATGAGGGAAGTGACTGTGATTGACCCAAAGTGGCTTGTTGAGTTAGCTCCAAGGTTC  3443
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  652   TACATGAGGGAAGTGACTGTGATTGACCCAAAATGGCTTGTTGAGTTAGCTCCAAGGTTC  711

Query  3444  TTCAAAGTGTCTGACCCAACAAAAATGAGCAAGCGTAAGCGCCAAGAACGGATTGAGCCG  3503
             || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct  712   TTTAAAGTCTCTGACCCAACGAAAATGAGCAAGCGTAAGCGCCAAGAACGGATTGAGCCT  771

Query  3504  TTGTATGACCGTTACCACGAGCCTAACTCATGGCGTCTCAGCAAAAGGCGTGCTTGA  3560
             |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  772   TTGTATGATCGTTACCACGAGCCTAACTCATGGCGTCTCAGCAAAAGACGTGCTTGA  828



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 142753956323


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5