BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26580.1
Length=1294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484422 jgi|Araly1|484422|fgenesh2_kg.5__414__AT3G26580.1 1866 0.0
> Ahg484422 jgi|Araly1|484422|fgenesh2_kg.5__414__AT3G26580.1
Length=1286
Score = 1866 bits (1010), Expect = 0.0
Identities = 1217/1310 (93%), Gaps = 41/1310 (3%)
Strand=Plus/Plus
Query 1 CTCTGGTTCTACTTGTTCCTCTGTTTTGGATTGTGGT-G-GCT--CTCTAATGGCGGCGG 56
||||||||||||||||||||||| ||||||||||||| | | | ||| ||||||||||
Sbjct 1 CTCTGGTTCTACTTGTTCCTCTG-TTTGGATTGTGGTGGTGGTGGTTCTCATGGCGGCGG 59
Query 57 TTATTGGAAACGTGGCGTTGTTACTTGACGTTAACTCTCACCGTACGGTGGTAACTGATC 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTATTGGAAACGTGGCGTTGTTACTTGACGTTAACTCTCACCGTACGGTGGTAACTGATC 119
Query 117 GGAGAATTCGTTTAACGGTGGTCGACGTCGTTTTGAATTTACAAAAGAGAGATTCGCACA 176
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 120 GGAGAATTCGTTTAACGGTGGTTGACGTCGTTCTGAATTTACAAAAGAGAGATTCGCACA 179
Query 177 GTCACGTTTCTCATTACGCTGCTCTCTCTTCCAATAAGCCTCTTGAATCTGACGGCGAAG 236
||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 180 GTCACGTTTCTCACTACGCTGCTCTTTCCTCCAATAAGCCTCTTGAATCTGACGGCGAGG 239
Query 237 CTCGGGTTCGCCGGTTTTTAACTCGCGGAAAAGCGAATTCCAGAGCTAACGCCGTCGATT 296
||||| |||||||||||||||||||||| || |||||||| || ||||||||||||||||
Sbjct 240 CTCGGATTCGCCGGTTTTTAACTCGCGGTAAGGCGAATTCGAGGGCTAACGCCGTCGATT 299
Query 297 TCGACGACGCGGGATCCAGCGACGAAGAAAGTAGTGACGGAGGCGGTGGTGGTGGTGACg 356
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 300 TCGACGACGCGGGATCCAGCGACGAGGAAAGTAGTGACGGAGGCGGTGGTGGTGGTGACG 359
Query 357 aggaggaggaggaggaatatttcgatgtggagaaggagaggaagaggagagctaaggaaT 416
||||||||||||| || | || |||||||||||||||||||||||||||||||||||||
Sbjct 360 AGGAGGAGGAGGAAGACT-TT--GATGTGGAGAAGGAGAGGAAGAGGAGAGCTAAGGAAT 416
Query 417 TTCATGATACGAAGGAGCTTGAGAGGAAAGCAGAGGAGTTACAGTATaagattgatgaag 476
|||| |||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 417 TTCAGGATATGAAGGAGCTAGAGAGGAAAGCAGAGGAGTTGCAGTATAAGATTGACGAAG 476
Query 477 aaggagacgattcagaggagaagaagaggatgagagtgaaga-gagaaCTCCAAAAGGTA 535
|||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||
Sbjct 477 AAGGAGACGATTCAGAGGAGAAGAAGAGGATGAGAGTGAA-ACGAGAGCTCCAAAAGGTA 535
Query 536 GCTCAGGAGCAAGCAGAGAGGAGAAAAACTGCAGAATTGATGTTTGAACTAGGTCAAAAG 595
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 536 GCTCAGGAGCAAGCAGAGAGGAGAAAAACTGCAGAATTGATGTTTGAATTGGGTCAAAAG 595
Query 596 GCTTATGGTAAAGGAATGTATGGACGAGCGATAGAGTTTCTT-GAAGGAGCTCTTACGAT 654
|||||||||||||||||||||||||| ||||| |||||| || |||||||||||||||||
Sbjct 596 GCTTATGGTAAAGGAATGTATGGACGCGCGATCGAGTTT-TTAGAAGGAGCTCTTACGAT 654
Query 655 TATCCCAAGGCCAACACTCTTTGGTGGTGAGATACAAATTTGGTTAGCTATGGCATATGA 714
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 655 TATCCCAAGGTCAACACTCTTTGGTGGTGAGATTCAAATTTGGTTAGCTATGGCATATGA 714
Query 715 GGCCAATAATCGCCACGCTGATTGCATTGATCTTTATCAGCAATTAGAGAAGAAACATCC 774
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 715 GGCCAATAATCGCCACGCTGATTGCATTGATCTTTATCAGCAACTAGAGAAGAAACA-CC 773
Query 775 C-AGTCCTGGTATTCGTCGTCAAGCTTCTGAGCTTCGGTATATCTTGCAAGCTCCTAAGC 833
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CGAGTCCTGGTATTCGTCGTCAAGCTTCTGAGCTTCGGTATATCTTGCAAGCTCCTAAGC 833
Query 834 TTAAGATATCTCAGGAGGAAATGGTTACTATTCCCATGATCGGTTCAAGTTACGACAGCT 893
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 834 TTAAGATATCTCAAGAGGAAATGGTTACTATTCCAATGATCGGTTCAAGTTACGACAGCT 893
Query 894 ATGCAGTGACATGGAGTGATAAGGAAAGGGATAAGGAGCGGCGAATGAATGCATCGACTA 953
||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||
Sbjct 894 ATGCAGTGACATGGAGTGACAAGGAGAGGGATAAGGAGCGGCGAATGAATGAATCGACTA 953
Query 954 CGAATCAGCTCAACTCGAGTGATGATTTTCTAGGAAAGCTCTTGGTTTGGCGACCGGTGG 1013
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||| | ||
Sbjct 954 CGAATCAGCTCAACTCGAGTGAAGACTTTCTTGGAAAGCTCTTGGTTTGGCGACCAGCGG 1013
Query 1014 TCGGTATGGAGAAGAACCGAGTCTTTTGGCTTGCTTTGACACTGTGGTTTGGTTTGGTTG 1073
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1014 TCGGTATGGAGAAGAACCGAGTCTTTTGGCTTGCTTTGACACTGTGGTTCGGTTTGGTTG 1073
Query 1074 GAGCAGCACTCATCTTACAAAGATAAGTAGAAGACATGCAAAATATTTTTCCATCGCTTT 1133
|||||||||||||||||||||||||||||||| | | ||| | ||||||||
Sbjct 1074 GAGCAGCACTCATCTTACAAAGATAAGTAGAA----T------T-TTT--C-ATCGCTTT 1119
Query 1134 AAATTATGGTTTGGTACTACTGTTTCTTCTACTTGTCTTGAAATTATATTTGATTTCATG 1193
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1120 CAATTATGGTTTGGTACT---GTTTCTTCTACATGTCTTGAAATTATATTTGATTTCATG 1176
Query 1194 TATAAATGTGTAAGCAAATGAATTCGTCGT-TGTATATA-A-A------GTATTTGATGG 1244
||||||| |||||||| |||||||||| || | |||||| | | |||||||||||
Sbjct 1177 TATAAATTTGTAAGCAGATGAATTCGTTGTATATATATATATATATATAGTATTTGATGG 1236
Query 1245 AAATATATATA-ACTTTGTTTATTTGATTATGTGTAATCTTTTTATAGTT 1293
||||||||||| | ||| | ||||||||||||||| |||||||||||||
Sbjct 1237 AAATATATATATAATTTATGTATTTGATTATGTGTTCTCTTTTTATAGTT 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48377981673
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5