BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26590.1
Length=1786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936365 jgi|Araly1|936365|scaffold_500556.1 2486 0.0
Ahg494175 jgi|Araly1|494175|fgenesh2_kg.7__3608__AT5G38030.1 1831 0.0
> Ahg936365 jgi|Araly1|936365|scaffold_500556.1
Length=1544
Score = 2486 bits (1346), Expect = 0.0
Identities = 1477/1541 (96%), Gaps = 6/1541 (0%)
Strand=Plus/Plus
Query 43 CTCTTTCTCTTAAGATGGCAAAAGACAAAGATATAACGGAGACGCTTCTCACTGCGGCGG 102
|||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 8 CTCTCTCTCTCAAGATGATAAAAGACAAAGATATAACGGAGACGCTTCTCACTGCGGCGG 67
Query 103 AAGAACGTTCTGATCTTCCTTTCTTATCCGTCGACGATATTCCTCCGATCACCACCGTCG 162
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 AAGAACATCCTGATCTTCCTTTCTTATCCGTCGACGATATTCCTCCGATCACCACCGTCG 127
Query 163 GTGGCTTCGTTAGGGAATTCAACGTGGAAACCAAAAAGCTATGGTACTTGGCCGGTCCCG 222
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 128 GTGGCTTCGTTAGGGAGTTCAACGTGGAAACCAAAAAGCTATGGTACTTGGCCGGCCCCG 187
Query 223 CCATTTTCACATCCGTGAACCAATATTCTCTCGGCGCTATTACTCAGGTCTTCGCCGGTC 282
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 188 CCATTTTCACGTCCGTGAACCAATATTCTCTCGGCGCTATTACTCAGGTCTTCGCTGGTC 247
Query 283 ACATCAGCACCATCGCTCTTGCCGCTGTCTCCGTCGAAAACTCCGTCGTTGCCGGCTTCT 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 ACATCAGCACCATCGCTCTTGCCGCTGTCTCCGTCGAAAACTCCGTCGTTGCCGGCTTCT 307
Query 343 CATTCGGCATCATGCTTGGAATGGGAAGTGCGTTAGAAACGCTATGTGGACAAGCGTTTG 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 CATTCGGCATCATGCTTGGAATGGGAAGTGCGTTAGAAACGCTATGTGGACAAGCGTTTG 367
Query 403 GAGCAGGAAAATTGTCAATGCTTGGCGTTTACTTGCAACGATCATGGGTGATACTAAACG 462
||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 368 GAGCAGGGAAATTGTCAATGCTCGGCGTTTACTTGCAACGTTCATGGGTGATACTAAACG 427
Query 463 TGACTGCTCTTATCCTCTCTCTCCTTTACATTTTCGCCGCCCCTATCCTCGCGTCCATTG 522
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 428 TGACCGCTCTTATCCTCTCTCTCCTTTACATTTTCGCCGCCCCAATCCTCGCGTCCATCG 487
Query 523 GTCAAACGGCGGCAATCTCTAGCGCGGCCGGAATATTTTCCATCTACATGATCCCTCAAA 582
| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 488 GCCAAACGGCGGCGATCTCTAGCGCCGCCGGAATATTTTCCATCTACATGATCCCTCAGA 547
Query 583 TCTTT-GCCTACGCCATCAATTTTCCAACCGCTAAATTTTTGCAATCGCAAAGCAAGATA 641
| ||| || ||||| || ||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 548 T-TTTCGCATACGCGATTAATTTCCCAACCGCTAAATTCTTGCAATCACAAAGCAAGATA 606
Query 642 ATGGTCATGGCCGTGATATCGGCTGTTGCACTTGTTATACACGTGCCTCTCACGTGGTTT 701
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 ATGGTCATGGCCGCGATCTCGGCTGTTGCACTTGTTATACACGTGCCTCTCACGTGGTTT 666
Query 702 GTCATTGTGAAGCTCCAGTGGGGTATGCCAGGTCTAGCCGTAGTGCTTAACGCGTCGTGG 761
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 667 GTCATTGTGAAGCTCCATTGGGGTATGCCGGGTCTAGCCGTCGTGCTTAACGCGTCGTGG 726
Query 762 -TGCTTCATTGACATGGCTCAGCTTGTGTACATATTTAGTGGTACGTGTGGTGAGGCTTG 820
|| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 727 GTG-TTCATTGACATGGCTCAGCTCGTGTACATATTTAGTGGTACGTGTGGTGAAGCTTG 785
Query 821 GTCTGGTTTCTCGTGGGAGGCTTTTCATAATTTGTGGAGTTTCGTTAGATTATCTTTGGC 880
||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 786 GTCTGGTTTATCGTGGGAGGCTTTTCATAATTTGTGGGGTTTCGTTAGATTGTCTTTGGC 845
Query 881 TTCTGCTGTTATGCTCTGTTTGGAGGTTTGGTATTTTATGGCAATCATATTATTTGCTGG 940
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 846 TTCTGCTGTTATGCTCTGTTTGGAGGTGTGGTATTTTATGGCAATCATATTATTTGCTGG 905
Query 941 ATATTTGAAGAATGCTGAAATCTCTGTAGCTGCCCTCTCCATCTGCATGAATATTTTGGG 1000
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 906 ATATTTGAAGAATGCTGAAATCTCCGTTGCTGCCCTCTCCATCTGCATGAATATTTTGGG 965
Query 1001 ATGGACTGCTATGATTGCTATTGGGATGAACACAGCCGTAAGTGTGAGAGTGTCTAATGA 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 ATGGACTGCTATGATTGCTATTGGGATGAACACAGCCGTAAGTGTGAGAGTGTCTAATGA 1025
Query 1061 ATTAGGAGCTAACCATCCAAGAACCGCGAAATTCTCACTACTTGTGGCAGTGATAACATC 1120
| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1026 ACTAGGAGCTAACCATCCAAGAACCGCGAAATTCTCACTACTAGTGGCAGTGATTACATC 1085
Query 1121 GACGCTAATCGGATTCATTGTATCAATGATTCTACTCATCTTTAGAGATCAATATCCATC 1180
|||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1086 GACGTTGATCGGATTCATTGTATCAATGGTTCTACTCATCTTTAGAGATCAATATCCATC 1145
Query 1181 ACTTTTTGTGAAAGACGAAAAAGTCATCATTCTTGTTAAAGAACTCACACCAATACTTGC 1240
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1146 GCTTTTTGTGAAAGACGAAGAAGTCATCAATCTTGTTAAAGAACTCACACCAATACTTGC 1205
Query 1241 ACTTTCCATTGTCATCAACAATGTCCAACCTGTCTTATCAGGTGTGGCTGTGGGAGCTGG 1300
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1206 ACTCTCCATTGTCATCAACAATGTCCAACCTGTCTTATCAGGTGTGGCTGTCGGAGCTGG 1265
Query 1301 ATGGCAAGCAGTGGTGGCCTACGTTAACATCGCCTGCTATTACGTGTTTGGAATCCCATT 1360
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1266 ATGGCAAGCAGTGGTGGCGTACGTTAACATCGCCTGTTATTACGTGTTTGGAATACCATT 1325
Query 1361 TGGTCTATTATTGGGGTACAAGCTTAACTATGGTGTAATGGGAATCTGGTGTGGAATGTT 1420
||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1326 TGGTCTATTATTGGGATACAAGCTTAACTTTGGTGTAATGGGAATCTGGTGCGGAATGTT 1385
Query 1421 GACGGGGACCGTGGTTCAGACAATAGTTTTAACATGGATGATCTGCAAAACAAATTGGGA 1480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 GACGGGAACCGTGGTTCAGACAATAGTTTTAACATGGATGATCTGCAAAACAAATTGGGA 1445
Query 1481 CACAGAGGCTTCAATGGCTGAGGATAGGATAAGAGAATGGGGAGGAGAAGTATCAGAAAT 1540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1446 CACAGAGGCTTCAATGGCTGAGGATAGGATAAGAGAATGGGGAGGAGAAGTATCGGAAAT 1505
Query 1541 AAAGCAACTCATAAACTAAAAGACATCATAGTATTCAAAGA 1581
|||||||||||||||||||||||||| |||||||||||||
Sbjct 1506 AAAGCAACTCATAAACTAAAAGACAT--TAGTATTCAAAGA 1544
> Ahg494175 jgi|Araly1|494175|fgenesh2_kg.7__3608__AT5G38030.1
Length=1730
Score = 1831 bits (991), Expect = 0.0
Identities = 1391/1583 (88%), Gaps = 31/1583 (2%)
Strand=Plus/Plus
Query 1 ACTCGTTGGTCCTTAGTC-TTCGACCTCCTTTAATCTCTCCATCTCT-T-TC--TCT--T 53
|||| |||||| |||||| || ||| | ||||||||| ||||||||| | || ||| |
Sbjct 42 ACTCTTTGGTCTTTAGTCTTTTGACATTCTTTAATCTTTCCATCTCTGTCTCTGTCTCGT 101
Query 54 -AAGATGGCAAAAGACAAAGATATAACGGAGACGCTTCTCA-CTGCGGCGGAAGAACGTT 111
| |||| |||||||||| || |||||||||| ||||| | ||||||||||||||||
Sbjct 102 CGACATGGAAAAAGACAAAAATCTAACGGAGACCCTTCT-ATCTGCGGCGGAAGAACGAC 160
Query 112 CTGATCTTCCTTTCTTATCCGTCGACGATATTCCTCCGATCACCACCG-TCGGTGGCTTC 170
|| |||||||||||| |||||| || |||||||||||||||||||||| || ||||||||
Sbjct 161 CTCATCTTCCTTTCTCATCCGTAGATGATATTCCTCCGATCACCACCGTTC-GTGGCTTC 219
Query 171 GTTAGGGAATTCAACGTGGAAACCAAAAAGCTATGGTACTTGGCCGGTCCCGCCATTTTC 230
| ||||| || |||||||| |||||||||||||||||||||||| || || ||||||
Sbjct 220 CTCAGGGAGTTTAACGTGGAGGTCAAAAAGCTATGGTACTTGGCCGGGCCAGCTATTTTC 279
Query 231 ACATCCGTGAAC-CAATATTCTCTCGGCGCTATTACTCAGGTCTTCGCCGGTCACATCAG 289
| | ||| ||| || ||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 280 ATGT-CGTTAACTCAGTATTCTCTCGGCGCTGCTACTCAGGTCTTCGCCGGACACATCAG 338
Query 290 CACCATCGCTCTTGCCGCTGTCTCCGTCGAAAACTCCGTCGTTGCCGGCTTCTCATTCGG 349
||| |||||||| || || ||||||||||||||||| ||| | ||||| |||||||| ||
Sbjct 339 CACTATCGCTCTGGCGGCCGTCTCCGTCGAAAACTCGGTCATCGCCGGGTTCTCATTTGG 398
Query 350 CATCATGCTTGGAATGGGAAGTGCGTTAGAAACGCTATGTGGACAAGCGTTTGGAGCAGG 409
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 399 CGTCATGCTTGGAATGGGAAGCGCGTTAGAAACGCTATGTGGACAAGCGTTTGGAGCAGG 458
Query 410 AAAATTGTCAATGCTTGGCGTTTACTTGCAACGATCATGGGTGATACTAAACGTGACTGC 469
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 459 GAAATTGTCAATGCTTGGCGTTTACTTGCAACGATCATGGGTGATACTTAACGTGACCGC 518
Query 470 TCTTATCCTCTCTCTCCTTTACATTTTCGCCGCCCCTATCCTCGCGTCCATTGGTCAAAC 529
|| | ||||||||||| |||||||||||||| || ||||| |||| ||| || || ||
Sbjct 519 GATTTTACTCTCTCTCCTATACATTTTCGCCGCTCCAATCCTGGCGTTCATCGGCCAGAC 578
Query 530 GGCGGCAATCTCTAGCGCGGCCGGAATATTTTCCATCTACATGATCCCTCAAATCTTTGC 589
| | || ||||||||||| | |||||||||||||||||||||||||| || ||||||||
Sbjct 579 GCCAGCGATCTCTAGCGCCACAGGAATATTTTCCATCTACATGATCCCACAGATCTTTGC 638
Query 590 CTACGCCATCAATTTTCCAACCGCTAAATTTTTGCAATCGCAAAGCAAGATAATGGTCAT 649
|||||| | |||| |||||||||||||| |||||||| |||||||| || ||||||||
Sbjct 639 TTACGCCGTTAATTACCCAACCGCTAAATTCTTGCAATCACAAAGCAAAATCATGGTCAT 698
Query 650 GGCCGTGATATCGGCTGTTGCACTTGTTATACACGTGCCTC-TCACGTGGTTTGTCATTG 708
||| | |||||| || |||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct 699 GGCTGCGATATCAGCGGTTGCACTTGTTCTACACGTG-CTCTTCACGTGGTTTGTCATTG 757
Query 709 TGAAGCTCCAGTGGGGTATGCCAGGTCTAGCCGTAGTGCTTAACGCGTCGTGGTGCTTCA 768
| |||||||||||| | | | ||||||||||| |||||||||||||||||||| ||||
Sbjct 758 AGGGGCTCCAGTGGGGCACGGCGGGTCTAGCCGTCGTGCTTAACGCGTCGTGGTGGTTCA 817
Query 769 TTGACATGGCTCAGCTTGTGTACATATTTAGTGGTACGTGTGGTGAGGCTTGGTCTGGTT 828
||| | | || ||||| ||||||||||||||||| || |||||||| ||||||||||| |
Sbjct 818 TTGTCGTCGCACAGCTCGTGTACATATTTAGTGGCACATGTGGTGAAGCTTGGTCTGGAT 877
Query 829 TCTCGTGGGAGGCTTTTCATAATTTGTGGAGTTTCGTTAGATTATCTTTGGCTTCTGCTG 888
|||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 TCTCCTGGGAAGCCTTCCATAATTTGTGGAGTTTCGTTAGATTATCTTTGGCTTCTGCTG 937
Query 889 TTATGCTCTGTTTGGAGGTTTGGTATTTTATGGCAATCATATTATTTGCTGGATATTTGA 948
||||||| ||||||||||| |||||| | |||||| ||||| ||||||||||||||||||
Sbjct 938 TTATGCTTTGTTTGGAGGTGTGGTATCTCATGGCAGTCATACTATTTGCTGGATATTTGA 997
Query 949 AGAATGCTGAAATCTCTGTAGCTGCCCTCTCCATCTGCATGAATATTTTGGGATGGACTG 1008
|||||||||| ||||| ||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 998 AGAATGCTGAGATCTCCGTAGCCGCTCTCTCCATCTGCATGAACATTTTGGGATGGACTG 1057
Query 1009 CTATGATTGCTATTGGGATGAACACAGCCGTAAGTGTGAGAGTGTCTAATGAATTAGGAG 1068
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1058 CAATGATTGCTATTGGGATGAACACAGCCGTAAGTGTGAGAGTGTCTAATGAACTAGGAG 1117
Query 1069 CTAACCATCCAAGAACCGCGAAATTCTCACTACTTGTGGCAGTGATAACATCGACGCTAA 1128
| || |||||||||||||||||||| || ||||| |||||||||||||||||||| ||
Sbjct 1118 CAAAGCATCCAAGAACCGCGAAATTTTCTCTACTAGTGGCAGTGATAACATCGACACTGC 1177
Query 1129 TCGGA-TT-CATTGTATCAAT-GATTCTACTCATCTTTAGAGATCAATATCCATCACTTT 1185
||||| || | | ||||||| | | ||||||||||||||||||||||||||||| |||
Sbjct 1178 TCGGACTTGC-TA-TATCAATTGCT-CTACTCATCTTTAGAGATCAATATCCATCGTTTT 1234
Query 1186 TTGTGAAAGACGAAAAAGTCATCATTCTTGTTAAAGAACTCACACCAATACTTGCACTTT 1245
||||| ||||||| ||||||||||| |||||||||| || |||||||| ||| |||| |
Sbjct 1235 TTGTGGGAGACGAAGAAGTCATCATTGTTGTTAAAGATCTTACACCAATTCTTACACTCT 1294
Query 1246 CCATTGTCATCAACAATGTCCAACCTGTCTTATCAGGTGTGGCTGTGGGAGCTGGATGGC 1305
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1295 CCATTGTCATCAACAATGTCCAACCTGTCTTATCAGGGGTGGCTGTGGGAGCTGGATGGC 1354
Query 1306 AAGCAGTGGTGGCCTACGTTAACATCGCCTGCTATTACGTGTTTGGAATCCCATTTGGTC 1365
|||||| ||||| ||||||||||| | |||||||||| |||||||||||||||||||||
Sbjct 1355 AAGCAGCCGTGGCGTACGTTAACATAGTCTGCTATTACTTGTTTGGAATCCCATTTGGTC 1414
Query 1366 TATTATTGGGGTACAAGCTTAACTATGGTGTAATGGGAATCTGGTGTGGAATGTTGACGG 1425
||||||| || ||||||||||||| ||| ||||||||||| ||||| |||||||||||||
Sbjct 1415 TATTATTAGGATACAAGCTTAACTTTGGCGTAATGGGAATTTGGTGCGGAATGTTGACGG 1474
Query 1426 GGACCGTGGTTCAGACAATAGTTTTAACATGGATGATCTGCAAAACAAATTGGGACACAG 1485
| |||||||| ||||||||||| ||||||| ||||||||||| |||||||||||||||||
Sbjct 1475 GAACCGTGGTACAGACAATAGTCTTAACATTGATGATCTGCAGAACAAATTGGGACACAG 1534
Query 1486 AGGCTTCAATGGCTGAGGATAGGATAAGAGAA-TGGGGAGGAGAAGTATCAGAAATAAAG 1544
||||| |||||||||||| |||||||||| || ||||||||||||| |||||| |
Sbjct 1535 AGGCTGCAATGGCTGAGGGTAGGATAAGA-AAGTGGGGAGGAGAAGGATCAGA------G 1587
Query 1545 CAACTCATAAACTAAAA-GACAT 1566
|||||| |||||||||| |||||
Sbjct 1588 CAACTCTTAAACTAAAAAGACAT 1610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67038831200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5