BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26600.1
Length=2292
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484424 jgi|Araly1|484424|fgenesh2_kg.5__416__AT3G26600.1 3330 0.0
> Ahg484424 jgi|Araly1|484424|fgenesh2_kg.5__416__AT3G26600.1
Length=2159
Score = 3330 bits (1803), Expect = 0.0
Identities = 2050/2169 (95%), Gaps = 17/2169 (1%)
Strand=Plus/Plus
Query 41 aacaacaacaacaacacactagtaacaacaGTAGCATCAGCTTGAAAGAGAGAACTAAA- 99
||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||
Sbjct 1 AACAACAACAACAACACACTAGTAACAACAGTAGCATCACCTTGAAAGAGAGAGC-AAAT 59
Query 100 ACCTAGAAATCGAGAGAGATTGGTGGAAGATTTTTCACCAGA-TTTCATGGGAGAAGAAG 158
||||||||||||||||||||||||||||| ||||||||||| ||| || || | |||||
Sbjct 60 CCCTAGAAATCGAGAGAGATTGGTGGAAGA-TTTTCACCAGATTTTAAT-GG-G-AGAAG 115
Query 159 AGAGTCGAATTGGAGACGAGCTTTCGATTTTGGTTCTCACGGCGGAGCGACTCCGTGTAG 218
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 116 AGAGTCGAATTGGAGACGAGCTTTCGATTTTGGTACTCACGGCGGAGCGACTCCGTGTAG 175
Query 219 CT-GTGGATGAAGCTGAATCATTCAAAACAGAGTGTGGCGAGGTTGGTAAACAAGTAGAT 277
| ||||||||||||||||| ||||||||||||||||| |||||||| |||| |||||||
Sbjct 176 -TGGTGGATGAAGCTGAATCGTTCAAAACAGAGTGTGGTGAGGTTGGGAAACTAGTAGAT 234
Query 278 CGGCTTGCTCAAATGCTTAGAACACTTGTTCGATTCGTCTCTAGTTCTTCTCAACAAGTT 337
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 235 CGGCTTGCTCAAATGCTTAGAACACTTGCTCGATTCGTCTCTAGTTCTTCTCAACAGGTT 294
Query 338 TATGATCGGCCGATTCGTAGAGTTATCGTCGATGTTAAGAAGAATCTCGAGCGTGGTTTT 397
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 295 TATGATCGGCCGATTCGTAGAGTTATCGTCGATGTTAAGAAGAATCTAGAGCGAGGTTTT 354
Query 398 GCTCTTGTTCGTAAGTGTAGGAGACACAATATAATCCGACGAGTTTGTACTATCATCAAC 457
|||| |||||||||||| ||||||||||||| ||||| |||||||||||||||||||||
Sbjct 355 TCTCTGGTTCGTAAGTGTCGGAGACACAATATTATCCGGCGAGTTTGTACTATCATCAAC 414
Query 458 GCTGCTGATTTTCGTAAGGTGATTAATCTTCTGGAATCTTCTAATGGTGATGTGAAATGG 517
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 415 GCTGCTGATTTTCGTAAGGTGATTAATCTTCTCGAATCTTCTAATGGTGATGTGAAATGG 474
Query 518 ATTCTGAGTGTGTTTGATTCCGACGGAGATGGAAGTTTTGGTGGTGGAATCGTGATTTCG 577
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 475 ATTCTGAGTGTGTTTGATTCTGACGGAGATGGAAGTTTTGGTGGTGGAATTGTGATTTCG 534
Query 578 CTTCCTCCGATTGCTACGAATGATCCGATTTTGCCTTGGGTTTGGTCTTTGGTTGCGTCG 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CTTCCTCCGATTGCTACGAATGATCCGATTTTGCCTTGGGTTTGGTCTTTGGTTGCGTCG 594
Query 638 ATACAGATGGGGAAATTGGTTGATAAGATTGATGCGGCGAATCAGCTTGGTTCTCTTGCC 697
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 595 ATACAGATGGGGAAATTGGTTGATAAGATTGACGCGGCGAATCAGCTTGGTTCTCTTGCC 654
Query 698 GGAGATAATGATCGGAATAAGAAGATTATTGTTGATGAAGGTGGTGTTTCTCCGTTGTTA 757
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GGAGATAATGATCGGAATAAGAAGATTATTGTTGATGAAGGTGGTGTTTCTCCGTTGTTG 714
Query 758 AGGCTTTTAAAGGAGAGTTCATCGGCGGAGGGGCAAATCGCGGCGGCTACTGCGTTAGGG 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AGGCTTTTAAAGGAGAGTTCATCGGCGGAGGGGCAAATCGCGGCGGCTACTGCGTTAGGG 774
Query 818 TTGTTGGCTTGTGATGAAGATAAGGTTAGGTCTATTGTTAATGAACTTGGTGTTCCGATT 877
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 775 TTATTGGCTTGTGATGAAGATAAGGTTAGGTCTATTGTTAATGAACTCGGTGTTCCGATT 834
Query 878 ATTGTTCAGGTTCTTGGTGATTCTTCTGTTAGAGTTCAGATTAAGGTAGCTACATTGGTT 937
||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 835 ATTGTTCAGGTTCTTGGGGATGCTTCGGTTAGAGTTCAGATTAAGGTAGCTACATTGGTT 894
Query 938 GCTAGAATGGCTGAACATGATCCTGTTGCTCAAGATGAGTTTGCTAGGCAGAGTGTGATT 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GCTAGAATGGCTGAACATGATCCTGTTGCTCAAGATGAGTTTGCTAGGCAGAGTGTGATT 954
Query 998 AAGCCATTAGTTACGTTGCTTTCGCTTGATGTGTTT-GTTGATGATATTCATTTGAGTAA 1056
||||| |||||||||||||||| |||||||| ||| || ||||| ||||||||||||||
Sbjct 955 AAGCCGCTAGTTACGTTGCTTTCACTTGATGT-TTTCGTGGATGACATTCATTTGAGTAA 1013
Query 1057 GCATAATAGTATTCACTCTCTTGTTCAGATGAACAAAGAGGTTGAGAAAGATCCGTCTTC 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GCATAATAGTATTCACTCTCTTGTTCAGATGAACAAAGAGGTTGAGAAAGATCCGTCTTC 1073
Query 1117 GAAGCTTTATAGGCCGCTTAAGAGTTCTAAGTCGAATGTGTATCGTGACATTGGTGGTAG 1176
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 AAAACTTTATAGGCCGCTTAAGAGTTCTAAGTCGAATGTGTATCGTGACATTGGTGGTAG 1133
Query 1177 TGGAAGTAGAACTGGGAATTTCAAGAAGGAGAGGGATAATGAGAATCCTGAGGTGAAACA 1236
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1134 TGGAAGTAGAACAGGGAATTTCAAGAAAGAGAGGGATAATGAGAATCCTGAGGTGAAACA 1193
Query 1237 TGAGCTTAAGGTCAATTGTGCGGAAGCTTTGTGGATGCTTGCTCGAGGAAATGTAGCGAA 1296
|||||||||||| ||||| |||||||||||||||||||||||| |||| |||||||||||
Sbjct 1194 TGAGCTTAAGGTTAATTGCGCGGAAGCTTTGTGGATGCTTGCTAGAGGGAATGTAGCGAA 1253
Query 1297 TAGTAGGAGGATTACGGAAACGAAAGGGTTGCTTTCTTTGGCGAAGATTGTGGAAAAGGA 1356
|||||||||||| ||||| || |||||| ||||||||||||||||||| |||||||| ||
Sbjct 1254 TAGTAGGAGGATAACGGAGACAAAAGGGCTGCTTTCTTTGGCGAAGATAGTGGAAAAAGA 1313
Query 1357 AGTTGGTGAATTGCAATATAATTGTTTGATGACTCTGATGGAGATAACCGCTGCTGCGGA 1416
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1314 AGTTGGTGAATTGCAATACAATTGTTTGATGACTCTGATGGAGATAACCGCTGCTGCAGA 1373
Query 1417 GTCGAGTGCTGACCTTAGACGGGCAGCATTCAAGACTAATTCTCCTGCTGCTAAAGCTGT 1476
||||| ||||||||||||||| ||||| |||||||||||||| || ||||| ||||||||
Sbjct 1374 GTCGAATGCTGACCTTAGACGAGCAGCTTTCAAGACTAATTCCCCGGCTGCCAAAGCTGT 1433
Query 1477 TATTGATCAGATGTTATGGATAATCAAAGATGTCGATAGCCCGATTTTAAAAATCCCAGC 1536
|||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 1434 TATTGACCAGATGTTATGGATAATCAAAGAAGTCGATAGCCCAATTTTGAAAATCCCAGC 1493
Query 1537 GATTCAATCTATCGGGTCATTGGCACGGACATTCCCGGCAAGAGAAACGAGAATGAT-CA 1595
||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 1494 GATTCAATCTATCGGATCATTGGCACGGACATTCCCAGCAAGAGAAACAAGAATGATACA 1553
Query 1596 AGCCATTGGTTGAGAAACTCGGTAGTAGCAACCAAGAAGTGGCTATAACAGCTGTAATTT 1655
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1554 -GCCATTGGTGGAGAAACTCGGTAGTAGCAACCAAGAAGTGGCGATAACAGCTGTAATAT 1612
Query 1656 CATTGCAGAAATTCGTATGTCCCGAGAACTTCCTCTGCGCAGAGCACTCGAAGAACATAA 1715
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 CATTGCAGAAATTCGTCTGTCCCGAGAACTTCCTCTGCGCAGAGCACTCGAAGAACATAA 1672
Query 1716 TCGAATACGGAGCAATCCCGTTATTGATGAAACTAATAAGGAACGTCGAGCAGCAAATGC 1775
|||||||||| |||||||||||| |||||||||| ||||| ||| |||||||||||||||
Sbjct 1673 TCGAATACGGGGCAATCCCGTTACTGATGAAACTGATAAGAAACTTCGAGCAGCAAATGC 1732
Query 1776 AGTTACAGTGTCTAGCTTTACTCTGCTACCTTTCCGTGAATGCCAGTAACCACCAACAGT 1835
||||||||||||||||| | ||||| |||||||| | || || ||||||||| | || |
Sbjct 1733 AGTTACAGTGTCTAGCTCTGCTCTGTTACCTTTCAATAAACGCTAGTAACCACGAGCAAT 1792
Query 1836 TGGAACAGGCCAAGGTTTTGACGGTGCTCGAAGGTGCAGAACGTTTGGCGGGTCTGCAGA 1895
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1793 TGGAACAGGCCAAGGTTTTGACTGTGCTCGAAGGTGCAGAACGTTTGGCGGGTCTGCAGA 1852
Query 1896 ATATGGAGTTGAGAGAACTCGTGTCGAAAGCTATATATCAGCTAAGTCTATACAATGCAG 1955
||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 1853 ATATGGAGTTGAGAGAACTTGTGTCGAAAGCGATATATCAACTAAGTCTATACAATGCAG 1912
Query 1956 GAAGTCACAGTCAAATGCTATCGTATGTTGGTCCTTAAAGCAAGATACAGTTTATAGTGT 2015
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1913 GAAGTCACAGTCAAATGCTAACGTATGTTGGTCCTTAAAGCAAGATACAGTTTTTAGTGT 1972
Query 2016 GTTGGATTCATATCGTACAGACAG-GAATCTTCATTGTTAGATTTACAGAGAAAGAGCAA 2074
||||||||||||| ||| || ||| || ||||||||||||||||||||||||||||||||
Sbjct 1973 GTTGGATTCATATGGTATAGGCAGAGATTCTTCATTGTTAGATTTACAGAGAAAGAGCAA 2032
Query 2075 AAAGCAGAATCTCTCATTTTGTGATCGCTGATTGATCAAATCCTTCATTGTATATGGAAC 2134
||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||
Sbjct 2033 AAA-CAGAATCTCTCATTTTGTGATCGTTGATTGATCAAATCCTTCATTGTAAATGAAAT 2091
Query 2135 G-ACACAAAGATAATTAGGTGGAAGGGTAATAAAACTAGCTTTGCTCTCTGTGATTCGCT 2193
| | |||||||||||||| ||||||||||||||||||||||||||||||| || || |||
Sbjct 2092 GGA-ACAAAGATAATTAGATGGAAGGGTAATAAAACTAGCTTTGCTCTCTCTGGTTTGCT 2150
Query 2194 AGGCTATGA 2202
|| |||||
Sbjct 2151 TGGTTATGA 2159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86312495170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5