BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26610.1
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484425 jgi|Araly1|484425|fgenesh2_kg.5__417__AT3G26610.1 2514 0.0
> Ahg484425 jgi|Araly1|484425|fgenesh2_kg.5__417__AT3G26610.1
Length=1631
Score = 2514 bits (1361), Expect = 0.0
Identities = 1547/1636 (95%), Gaps = 15/1636 (1%)
Strand=Plus/Plus
Query 38 aaaacataacacaaa-gttataagaaaaTATGAAGACAGTAAAGAGTTTACCTATTTTAG 96
||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 AAAACATAACA-AAAGGTTATAAGAAAATATGAAGACAGTAAAGAGTTTACCTCTTTTAG 59
Query 97 CTATGCTACTCGGTGTCATAATTGTAGCCGCCGCCATCTCCACCGTCTCCGTTGAGGGCC 156
||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct 60 CTATGCTACTCGGTGTCATAATTGTAGCCGCAGCCATCTCCACTATCTCCGTCGAGGGCC 119
Query 157 GTAAACATCACGTAAAGAAGATTAAACCCAAACACCGTCGTCATTCCAAAAACACTCCTA 216
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 120 GTAAACATCAGGTAAAGAAGATTAAACCCAAACACCGTCGTCATTCCAAAAACACCCCTA 179
Query 217 CCGGCTCTCCGGCACCCGCACCTTACCCGTCCACCAACGAGGGCGTTTTCAACATTTTCT 276
||||||| |||||||| || ||||||||||||||| |||||||||||||||||||| |||
Sbjct 180 CCGGCTCACCGGCACCAGCTCCTTACCCGTCCACCCACGAGGGCGTTTTCAACATTATCT 239
Query 277 CCTATGGTGCCAAGGGTGATGGAGTCTCTGACGACTCAAAGGCATTGGTCGGAGCGTGGA 336
||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 240 CCTTTGGTGCCAAGGGTGATGGAGTCTCCGACGACTCAAAGGCATTGGTAAGAGCGTGGA 299
Query 337 AGGCAGCTTGTAAAGTGGTCGGAGGGAAAGTGGAGATTCCGGCAGGGACACAGTTTTTGG 396
|||| |||||| |||| ||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 300 AGGCGGCTTGTGAAGTTGTCGGAGGGAAGGTGGAGATTCCGGCAGGGAAACAGTTTTTGG 359
Query 397 TGAAGGCAGTGACACTGCAAGGGCCGTGTAAGGAGGAGACGGTGGTTCAAATAGAAGGAA 456
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 360 TGAAGGCAGTGACACTGCAAGGGCCGTGCAAGGAGGAGACGGTGGTTCAAATAGAAGGAA 419
Query 457 TCTTAGTGGCTCCAGAGAAGATAGGGTCATGGCCTAATTCAAGCTTGTTTCAATGGCTTA 516
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 420 CCTTAGTGGCTCCAGAGAAGATAGGGTCATGGCCTAAGTCAAGCTTGTTTCAATGGCTTA 479
Query 517 ACTTCAAATGGGTCAGTCATTTGACCATCCAAGGCTCAGGGACTCTTAACGGTCGTGGCT 576
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACATCAAATGGGTCAGTCATGTGACCATCCAAGGCTCAGGGACTCTTAACGGTCGTGGCT 539
Query 577 ATAACTGGTGGAACTTAGACACTTATCAAACTCAGACGAGAAATAAGTATATCCCACCAA 636
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 540 CTAACTGGTGGAACTTAGACACTTATCAAATTCAGACAAGAAATAAGTATATCCCACCAA 599
Query 637 TGAAACCAACGGCACTTCGGTTTTATTCAAG-TAATAACGTCACGGTCCGTGATATAAGC 695
||||||||||||||||| | |||||| | || | ||||||| || ||||||||||||||
Sbjct 600 TGAAACCAACGGCACTTAGATTTTATGC-AGCTCATAACGTGACAGTCCGTGATATAAGT 658
Query 696 ATCGTGAACAGTCCATTATGTCATTTGAAGTTCGATGATTCGGATGGAGTCAAAGTCAAC 755
||||||||||||||| | || |||||||||||||||||||| || |||||||||||||||
Sbjct 659 ATCGTGAACAGTCCACTGTGCCATTTGAAGTTCGATGATTCCGACGGAGTCAAAGTCAAC 718
Query 756 AACATTACGATCTCTTCGCCGGAGAATAGCCCTAACACCGACGGCATCCACCTCCAGAAC 815
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 719 AACATAACGATTTCTTCGCCGGAGAACAGCCCTAACACCGACGGCATCCACCTCCAGAAC 778
Query 816 ACACGTAACGTCGAGATTCAACACTCCAACATCGCTTGTGGAGATGACTGTGTATCCATT 875
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 779 ACACGTAACGTCGAGATTCAACACTCTAACATCGCTTGTGGAGATGACTGTGTATCCATT 838
Query 876 CAAACCGGCTCCTCCAATGTACATATTCACCACATCAATTGTGGCCCTGGCCATGGCATT 935
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CAAACTGGTTCCTCCAATGTACATATTCACCACATCAATTGTGGCCCTGGCCATGGCATT 898
Query 936 AGCATAGGTGGACTAGGGAAAGATAAGAGTGTGGCATGTGTTTCTGATATCATTGTAGAG 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AGCATAGGTGGACTAGGGAAAGATAAGAGTGTGGCATGTGTTTCTGATATCATTGTAGAG 958
Query 996 GATATCTCTATACAAAACACTCTTGCTGGTGTTCGAATCAAGACTTGGCAGGGAGGATTA 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GATATCTCTATACAAAACACTCTTGCTGGTGTTCGAATCAAGACTTGGCAGGGAGGATTA 1018
Query 1056 GGGGTCGTCAAGAACCTAACGTTTTCGAACATTCAAGTAAAGGACGTGAAGGTACCAATA 1115
|| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||
Sbjct 1019 GGAGTCGTCAAGAACCTAACATTTTCGAACATTCAAGTAACGGACGTGAAGGTACCGATA 1078
Query 1116 GTAATCGACCAATATTACTGCGACAAGTCCAAGTGTAAGAATCAGACGCGTGCAGTGTCG 1175
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1079 GTAATAGACCAATATTACTGCGACAAGTCCAAGTGTAAGAATCAGACCCGTGCTGTGTCG 1138
Query 1176 ATTTCCGGCGTTAAATACAACAACATTGTCGGTAGTTTCACGGTGCAACCGGTACGTATT 1235
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1139 ATTTCCGGTATTAAATACAACAACATTGTCGGTAGTTTCACGGTGCAACCAGTACGTATC 1198
Query 1236 GCATGCAGCAACAACGTGCCATGCATGGACGTGGATCTTATGGATATAAGGCTACGACCT 1295
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1199 GCATGCAGCAACAACGTGCCATGCATGGACGTGGATCTTATGGATATAAGGCTAAGACCT 1258
Query 1296 TCTGGAGGAATCAGAGGGTTACAAACTCATCAGCAACAACAAGCTTTGTGTTGGAACTCA 1355
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCCGGAGGAATCAGAGGGTTACAAACTCATCAGCAACAACAAGCTTTGTGTTGGAACTCG 1318
Query 1356 TATGGCAAAACACAAGGGCCTTTGGTTCCTTCTAGCATTGGCTATTGCTTGAGGAAGAGT 1415
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1319 TACGGCAAAACACAAGGGCCTTTGGTTCCTTCAAGTATTGGCTATTGCTTGAGGAAGAGT 1378
Query 1416 AATATTGGTGGTTATTATTCACAAAAAGTTTCTCGGTCCTATGACAAGATTTGCCCTTCA 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AATATTGGTGGTTATTATTCACAAAAAGTTTCTCGGTCCTATGACAAGATTTGCCCTTCA 1438
Query 1476 TAAAACCT-TAAATAAAAAA--CTAATATCAGTAATGCTA--C--CGATTCTAGGTATCT 1528
||||| | |||| || ||| ||| ||||||||||| | | |||||||||||||||
Sbjct 1439 TAAAAG-TATAAA-AATAAATTCTAG-ATCAGTAATGCCATGCATCGATTCTAGGTATCT 1495
Query 1529 ATGTTT-ACTATATTTGCTATTTAATTTGTGTTTATTTTGGGATGTCATGATGTATCCTT 1587
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1496 ATGTTTTACTATATTTGCTATTTAATTTGTGTTTATTTTGGGAGGTCATGATGTATCCTT 1555
Query 1588 TTGCTTCCCCTCTGCAACTTTTTGTGGATGTGAGAAGGTGGTGGCTTTTGTATCAGCTTT 1647
||||||||| |||||||||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct 1556 TTGCTTCCCTTCTGCAACTTTTTGTGGATGTGAGAAGGTGATGGCTATTGCATCAGCTTT 1615
Query 1648 TTATTTTGTTCCATAG 1663
||||||| ||||||||
Sbjct 1616 TTATTTTATTCCATAG 1631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64143972580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5