BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26618.1
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484426 jgi|Araly1|484426|fgenesh2_kg.5__418__AT3G26618.1 2433 0.0
Ahg920157 jgi|Araly1|920157|scaffold_101438.1 1548 0.0
> Ahg484426 jgi|Araly1|484426|fgenesh2_kg.5__418__AT3G26618.1
Length=1528
Score = 2433 bits (1317), Expect = 0.0
Identities = 1455/1521 (96%), Gaps = 12/1521 (1%)
Strand=Plus/Plus
Query 50 GCGTGCTCTGTTTTAAGCTTGAAGGAGGAAAAACATGGCAGACCAAGAATCAGATAAGAA 109
||||||||||| ||||||||||||| || | |||||||| ||||||||||||||||||||
Sbjct 10 GCGTGCTCTGTCTTAAGCTTGAAGGGGGGAGAACATGGCGGACCAAGAATCAGATAAGAA 69
Query 110 CATTGAGATTTGGAAGATTAAGAAGCTAATCAAAGGACTTGAAACCGCAAGAGGTAATGG 169
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 70 CATCGAGATTTGGAAGATTAAGAAGCTAATCAAAGGACTTGAAACCGCTAGAGGTAATGG 129
Query 170 AACAAGTATGATCTCTCTTATAATGCCTCCTAGAGATCAAGTAGCTCGTGTCACTAAGAT 229
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 130 AACAAGTATGATCTCTCTTATTATGCCTCCTAGAGATCAAGTAGCTCGTGTTACTAAGAT 189
Query 230 GCTTGCTGATGAATACGGAACCGCCTCAAACATCAAGAGTCGAGTGAATCGTCAATCTGT 289
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 190 GCTTGCTGATGAATACGGAACCGCCTCAAACATTAAGAGTCGAGTGAATCGTCAATCTGT 249
Query 290 TTTATCTGCCATTACTTCTGCTCAACAAAGATTGAAGCTTTACAACAAAGTTCCTCCGAA 349
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 250 TTTATCTGCTATTACTTCTGCTCAACAAAGATTGAAGCTTTACAATAAAGTTCCTCCAAA 309
Query 350 TGGTCTTGTTCTCTATACTGGAACCATTGTTACTGATGATGGTAAAGAGAAGAAAGTGAC 409
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 TGGTCTTGTTCTGTATACTGGAACCATTGTTACTGATGATGGTAAAGAGAAGAAAGTGAC 369
Query 410 GATTGATTTCGAGCCTTTTAAACCGATTAATGCTTCGTTGTATTTGTGTGACAATAAGTT 469
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 TATTGATTTCGAGCCTTTTAAACCGATTAATGCTTCGTTGTATTTGTGTGACAATAAGTT 429
Query 470 CCACACCGAGCCTTTGAATGAGCTTTTGGAGTCTGATGATAAGTTTGGTTTCATTGTTAT 529
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TCATACCGAGCCTTTGAATGAGCTTTTGGAGTCTGATGATAAGTTTGGTTTCATTGTTAT 489
Query 530 GGATGGAAATGGAACTTTGTTTGGTACTTTGAGTGGGAATACAAGAGAGGTTCTTCATAA 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 490 GGATGGAAATGGAACTTTGTTTGGTACTTTGAGTGGGAATACAAGAGAGGTTCTTCACAA 549
Query 590 GTTCACTGTCGATCTTCCGAAAAAGCACGGAAGAGGAGGACAATCTGCGTTGCGATTTGC 649
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GTTCACTGTTGATCTTCCTAAAAAGCACGGAAGAGGAGGACAATCTGCGTTGCGATTTGC 609
Query 650 TCGTCTTAGGATGGAGAAGAGACATAACTATGTGAGGAAAACCGCGGAGCTTGCCACTCA 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 TCGTCTTAGGATGGAGAAGAGACATAACTATGTGAGGAAAACCGCGGAGCTTGCCACTCA 669
Query 710 GTTTTACATTAATCCAGCTACGAGTCAGCCTAATGTCTCTGGTCTTATACTTGCTGGTTC 769
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 670 GTTTTACATTAATCCAGCTACGAGTCAGCCCAATGTCTCTGGTCTTATACTTGCTGGTTC 729
Query 770 AGCGGATTTTAAGACCGAGCTAAGTCAATCAGAACTGTTTGATCCTCGTCTTCAAGCTAA 829
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 AGCGGATTTCAAGACTGAGCTAAGTCAATCAGAACTGTTTGATCCTCGTCTTCAAGCTAA 789
Query 830 GATATTGAATGTGGTTGATGTTTCTTACGGAGGAGAGAATGGTTTCAACCAAGCAATTGA 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 GATATTGAATGTGGTTGATGTTTCTTACGGAGGAGAGAATGGTTTCAACCAAGCAATTGA 849
Query 890 GCTGTCTGCTGAGATTCTATCTAATGTGAAGTTCATACAAGAAAAGAAATTGATTGGGAA 949
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 850 GCTGTCTGCTGAGATTCTATCTAATGTGAAGTTCATACAGGAAAAGAAATTGATTGGGAA 909
Query 950 GTACTTTGAGGAGATTAGTCAAGACACTGGGAAATATGTTTTCGGTGTTGAAGATACTTT 1009
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 910 GTACTTTGAGGAGATCAGTCAAGACACTGGGAAATATGTTTTCGGTGTTGAGGATACTTT 969
Query 1010 AAAGGCTCTGGAAATGGGTGCTGTTGAGACTCTTATAGTGTGGGAGAATCTAGATATTAA 1069
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 970 AAAGGCTCTAGAAATGGGTGCTGTTGAAACTCTTATAGTGTGGGAGAATCTAGATATCAA 1029
Query 1070 TAGGTATGAGTTAAAGAACAACACGACCGGAGAAATCGTGATTAAGCATTTGGGAAAGGA 1129
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1030 TAGGTATGAGTTAAAAAACAACACGACCGGAGAAATTGTGATTAAGCATTTGGGAAAAGA 1089
Query 1130 TCAAGAGAACAACCAAAGCAATTTCCATGATGCAGAGACTAATGCAGAGTTAGAAGTTCA 1189
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1090 TCAAGAGAACAACCAAAGCAATTTCCATGATGCAGAGACCAATGCAGAGTTAGAAGTTCA 1149
Query 1190 GGAGAAGATGCCTCTGCTTGAATGGTTTGCTAACGAATATAAACGTTTTGGTTGTACACT 1249
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1150 GGAGAAGATGCCTCTGCTTGAATGGTTTGCTAACGAGTATAAACGTTTTGGTTGTACACT 1209
Query 1250 TGAGTTTGTGACTAACAAGTCCCAAGAAGGATCACAATTTTGCAGAGGCTTTGGCGGTAT 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1210 TGAGTTTGTGACTAACAAGTCCCAAGAAGGATCACAATTTTGCAGAGGCTTTGGCGGAAT 1269
Query 1310 TGGTGGATTGTTGCGGTACCAGCTTGATATGAGGACATTCGATGAATTATCCGATGGTGA 1369
|||||||||||||| |||||||||||||||||||| || ||||||||||| ||||| ||
Sbjct 1270 CGGTGGATTGTTGCGATACCAGCTTGATATGAGGACGTTTGATGAATTATCGGATGGGGA 1329
Query 1370 AGTTTATGAAGACTCAGATTAAGTAAGAGAAAATGTGGTTTAAGATCTGAAGAAGGATTT 1429
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 TGTTTATGAAGATTCCGATTAAGTAAGAGAAAATGTGGTTTAAGATCTGAAGAAGGATTT 1389
Query 1430 GAAGTTTGGGGaaaaaaaGAAAGACT-ATGAACTTTTGTTTGATATACTTTGTCTCTCTC 1488
||||||||||||||||| |||||||| | |||||||||||| | ||| |||||| ||||
Sbjct 1390 GAAGTTTGGGGAAAAAA-GAAAGACTCA-GAACTTTTGTTTTTTTTACCTTGTCTGTCTC 1447
Query 1489 TATTATCTTC--TGTT---GCCGC-T-TT-T-AAGTTTTTCTGAAACAGTTATGTTAAAA 1539
|||||||||| | || || || | || | |||||||||||||||| || ||||||||
Sbjct 1448 TATTATCTTCCATTTTCATGCTGCCTCTTCTTAAGTTTTTCTGAAACACTTTTGTTAAAA 1507
Query 1540 TGTATGAGAAATTTGAGCTTC 1560
||||||| |||||||||||||
Sbjct 1508 TGTATGAAAAATTTGAGCTTC 1528
> Ahg920157 jgi|Araly1|920157|scaffold_101438.1
Length=1346
Score = 1548 bits (838), Expect = 0.0
Identities = 1163/1321 (88%), Gaps = 18/1321 (1%)
Strand=Plus/Plus
Query 78 AAAAACATGGCAGACCAAGAATCAGATAAGAACATTGAGATTTGGAAGATTAAGAAGCTA 137
||||| ||||||| |||||||||||| |||||| ||||| |||||||||||||| |||
Sbjct 16 AAAAA-ATGGCAG---AAGAATCAGATACGAACATCGAGATCTGGAAGATTAAGAAACTA 71
Query 138 ATCAAAGGACTTGAAACCGCAAGAGGTAATGGAACAAGTATGATCTCTCTTATAATGCCT 197
||||| ||||||||| | || |||||||||||||| ||||||||||||||||| ||||||
Sbjct 72 ATCAAGGGACTTGAATCAGCTAGAGGTAATGGAACGAGTATGATCTCTCTTATTATGCCT 131
Query 198 CCTAGAGATCAAGTAGCTCGTGTCACTAAGATGCTTGCTGATGAATACGGAACCGCCTCA 257
||| | ||||||||| |||||||||| |||||||||| ||||||||| ||||| || |||
Sbjct 132 CCTCGTGATCAAGTATCTCGTGTCACAAAGATGCTTGGTGATGAATATGGAACTGCTTCA 191
Query 258 AACATCAAGAGTCGAGTGAATCGTCAATCTGTTTTATCTGCCATTACTTCTGCTCAACAA 317
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 192 AACATTAAGAGTCGAGTCAATCGTCAATCTGTTTTGTCTGCCATTACTTCTGCTCAACAA 251
Query 318 AGATTGAAGCTTTACAACAAAGTTCCTCCGAATGGTCTTGTTCTCTATACTGGAACCATT 377
|| ||||||||||||||||| |||||| | |||||||||||||||||||| || || |||
Sbjct 252 AGGTTGAAGCTTTACAACAAGGTTCCTACTAATGGTCTTGTTCTCTATACCGGCACTATT 311
Query 378 GTTACTGATGATGGTAAAGAGAAGAAAGTGACGATTGATTTCGAGCCTTTTAAACCGATT 437
|||| |||||||||||||||||||||||| || ||||||||||||| |||| ||||||
Sbjct 312 GTTAATGATGATGGTAAAGAGAAGAAAGTCACCTTTGATTTCGAGCCCTTTAGGCCGATT 371
Query 438 AATGCTTCGTTGTA-TTTGTGTGACAATAAGTTCCACACCGAGCCTTTGAATGAGCTT-T 495
|| ||||| ||||| || |||||||| |||||||| |||||| | ||||| |||||| |
Sbjct 372 AACGCTTCCTTGTACCTT-TGTGACAACAAGTTCCATACCGAGGCATTGAACGAGCTTCT 430
Query 496 TGGAGTCTGATGATAAGTTTGGTTTCATTGTTATGGATGGAAATGGAACTTTGTTTGGTA 555
| ||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 431 T-GAGTCTGATGACAAGTTTGGTTTCATTGTTATGGATGGTAATGGGACACTGTTTGGTA 489
Query 556 CTTTGAGTGGGAATACAAGAGAGGTTCTTCATAAGTTCACTGTCGATCTTCCGAAAAAGC 615
|||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct 490 CTTTGAGTGGGAATACTAGAGAGGTTCTTCATAAGTTTACTGTTGATCTCCCGAAGAAGC 549
Query 616 ACGGAAGAGGAGGACAATCTGCG-TTGCGATTTGCTCGTCTTAGGATGGAGAAGAGACAT 674
|||| |||||||||||||||||| || || |||||||| ||||||||||||||||||||
Sbjct 550 ACGGTAGAGGAGGACAATCTGCGCTT-CGTTTTGCTCGACTTAGGATGGAGAAGAGACAC 608
Query 675 AACTATGTGAGGAAAACCGCGGAGCTTGCCACTCAGTTTTACATTAATCCAGCTACGAGT 734
|| ||||| ||||||||||| |||||||| || ||||||||||| |||||||||||||||
Sbjct 609 AATTATGTTAGGAAAACCGCTGAGCTTGCTACACAGTTTTACATCAATCCAGCTACGAGT 668
Query 735 CAGCCTAATGTCTCTGGTCTTATACTTGCTGGTTCAGCGGATTTTAAGACCGAGCTAAGT 794
|||||||||||||||||||| || |||||||||||||| |||||||| || ||||| |||
Sbjct 669 CAGCCTAATGTCTCTGGTCTGATCCTTGCTGGTTCAGCTGATTTTAAAACTGAGCTCAGT 728
Query 795 CAATCAGAACTGTTTGATCCTCGTCTTCAAGCTAAGATATTGAATGTGGTTGATGTTTCT 854
|| || || ||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 729 CAGTCTGAGTTGTTTGATCCTCGTCTTCAAGCTAAGATATTGAATGTTGTCGATGTTTCT 788
Query 855 TACGGAGGAGAGAATGGTTTCAACCAAGCAATTGAGCTGTCTGCTGAGATTCTATCTAAT 914
|||||||| || || |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 789 TACGGAGGTGAAAACGGTTTCAACCAAGCTATTGAGCTGTCTGCTGAGATTCTATCAAAT 848
Query 915 GTGAAGTTCATACAAGAAAAGAAATTGATTGGGAAGTACTTTGAGGAGATTAGTCAAGAC 974
|||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||||
Sbjct 849 GTGAAGTTCATACAGGAGAAGAAACTGATTGGGAAGTACTTTGAGGAGATAAGTCAAGAT 908
Query 975 ACTGGGAAATATGTTTTCGGTGTTGAAGATACTTTAAAGGCTCTGGAAATGGGTGCTGTT 1034
|| |||||||| ||||||||||| || |||||| |||||||||| |||||||||||| |
Sbjct 909 ACCGGGAAATACGTTTTCGGTGTGGAGGATACTCTAAAGGCTCTAGAAATGGGTGCTATC 968
Query 1035 GAGACTCTTATAGTGTGGGAGAATCTAGATATTAATAGGTATGAGTTAAAGAACAACACG 1094
|| || ||||| |||||||||||||| ||||| || ||||| ||| ||||||||| ||||
Sbjct 969 GAAACCCTTATCGTGTGGGAGAATCTGGATATAAACAGGTACGAGCTAAAGAACAGCACG 1028
Query 1095 ACCGGAGAAATCGTGATTAAGCAT-TTGGGAAAGGATCAAGAGA-ACA-ACCAAAGCAAT 1151
|| |||||||| ||| | || || ||||||||| |||||||| | | || || ||||
Sbjct 1029 ACAGGAGAAATGGTGGTGAAACACCTTGGGAAAG-ATCAAGAGTCAGATAC-AA-GCAAC 1085
Query 1152 TTCCATGATGCAGAGACTAATGCAGAGTTAGAAGTTCAGGAGAAGATGCCTCTGCTTGAA 1211
||||||||| |||||||||| || ||| ||||||| |||||||||||||||||||| |||
Sbjct 1086 TTCCATGATTCAGAGACTAACGCCGAGCTAGAAGTCCAGGAGAAGATGCCTCTGCTAGAA 1145
Query 1212 TGGTTTGCTAACGAATATAAACGTTTTGGTTGTACACTTGAGTTTGTGACTAACAAGTCC 1271
|||||||| || || || |||||||| || || ||||||||||||||||||||||| |||
Sbjct 1146 TGGTTTGCAAATGAGTACAAACGTTTCGGCTGCACACTTGAGTTTGTGACTAACAAATCC 1205
Query 1272 CAAGAAGGATCACAATTTTGCAGAGGCTTTGGCGGTATTGGTGG-ATTGTTGCGGTACCA 1330
|||||||| ||||| ||||||||||| ||||| || |||||||| || ||| || |||||
Sbjct 1206 CAAGAAGGGTCACAGTTTTGCAGAGGTTTTGGTGGGATTGGTGGGAT-GTTACGTTACCA 1264
Query 1331 GCTTGATATGAGGACATTCGATGAATTATCCGATGGTGAAGTTTATGAAGACTCAGATTA 1390
|||||| ||||||||||| ||||| ||||| ||| ||||||||||||||| || |||||
Sbjct 1265 GCTTGACATGAGGACATTTGATGAGTTATCGGATACTGAAGTTTATGAAGATTCTGATTA 1324
Query 1391 A 1391
|
Sbjct 1325 A 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59230330975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5