BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26630.1
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484429 jgi|Araly1|484429|fgenesh2_kg.5__421__AT3G26630.1 2322 0.0
> Ahg484429 jgi|Araly1|484429|fgenesh2_kg.5__421__AT3G26630.1
Length=1565
Score = 2322 bits (1257), Expect = 0.0
Identities = 1478/1581 (93%), Gaps = 29/1581 (2%)
Strand=Plus/Plus
Query 34 TTATCGTTAATCCATGGCGGCTCCGTCGCCGTCTTCACCACCAAACCTCCTCTCTCCTCC 93
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1 TTATCGTTAATCCATGGCGGCTCCGTCGCCGTCTTCGCCACCAAACCTTCTCTCTCCTCC 60
Query 94 ACCATTCCGATCTCCCGAAGCTTCTTACTTTCTCCGAACTTGTTCAAATTTCTCTCAATT 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACCATTCCGATCTCCCGAAGCTTCTTACTTTCTCCGAACTTGTTCAAATTTCTCTCAATT 120
Query 154 GAAACAAATTCACACCAAAATCATCAAACACAATCTCACCAACGATCAGTTACTAGTTCG 213
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 GAAACAAATTCACACCAAAATCATCAAACACAATCTCACCAACGATCAATTACTAGTTCG 180
Query 214 TCAGCTCATAAGTGTTTCTTCTTCCTTCGGAGAAACCCAATACGCTTCTCTCGTCTTTAA 273
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 TCAGCTCATAAGTGTTTCTTCTTCCTTCGGAGAAACCCGGTACGCTTCTCTCGTCTTTAA 240
Query 274 TCAACTTCAATCTCCTTCTACTTTTACCTGGAACCTTATGATAAGATCTCTCTCTGTTAA 333
||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| | ||
Sbjct 241 TCAACTTCAATCTCCTTCTACGTTTACTTGGAACCTTATGATACGATCTCTCTCACTCAA 300
Query 334 TCACAAACCTCGTGAAGCTCTTCTTCTCTTTATCCTTATGATGATCTCTCATCAATCC-C 392
|||||| |||||||||||||||||||||||||| |||||| | |||||||||| || |
Sbjct 301 TCACAAGCCTCGTGAAGCTCTTCTTCTCTTTATTCTTATGCT---CTCTCATCAA-CCTC 356
Query 393 AGTTTGATAAATTCACTTTCCCTTTTGTTATCAAAGCTTGTCTCGCTTCTTCGTCGATTC 452
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 357 AGTTTGATAAATTCACTTTCCCTTTTGTTATCAAAGCTTGTCTCGCTTCTTCTTCTCTTC 416
Query 453 GTTTAGGTACCCAAGTTCATGGTTTAGCTATTAAAGCTGGGTTTTTTAATGATGTCTTCT 512
||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 417 GTTTAGGAACTCAAGTTCATGGTTTAGCTATTAAAGCTGGGTTTTTTAATGATGTGTTCT 476
Query 513 TCCAAAACACTCTCATGGATCTTTACTTTAAGTGTGGGAAACCAGATAGTGGACGTAAGG 572
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 477 TCCAAAACACTCTTATGGATCTTTACTTTAAGTGTGGGAAACCAGATTGTGGACGTAAGG 536
Query 573 TGTTTGATAAAATGCCTGGGAGAAGTATTGTTTCATGGACTACTATGCTTTATGGTCTTG 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGTTTGATAAAATGCCTGGGAGAAGTATTGTTTCATGGACTACTATGCTTTATGGTCTTG 596
Query 633 TCTCCAATTCTCAGTTAGATTCTGCAGAGATTGTATTCAATCAAATGCCAATGAGAAACG 692
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 597 TATCTAATTCTCAGTTAGATTCTGCAGAGATTGTATTCAATCAAATGCCAATGAGAAATG 656
Query 693 TTGTTTCATGGACTGCAATGATTACGGCTTACGTTAAGAACCGTAGACCCGACGAGGCGT 752
|||||||||||||||| ||||| || ||||| |||||||||||||||||||| |||||||
Sbjct 657 TTGTTTCATGGACTGCGATGATCACTGCTTATGTTAAGAACCGTAGACCCGATGAGGCGT 716
Query 753 TTCAGCTCTTTAGGAGAATGCAGGTTGATGATGTCAAGCCTAATGAGTTTACGATTGTTA 812
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 717 TTCAGCTCTTTAGGAGAATGCAGGTTGATGATGTTAAGCCGAATGAGTTTACGATTGTTA 776
Query 813 ATTTGTTGCAAGCTTCTACTCAGTTAGGAAGCTTGTCTATGGGAAGATGGGTTCATGACT 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ATTTGTTGCAAGCTTCTACTCAGTTAGGAAGCTTGTCTATGGGAAGATGGGTTCATGACT 836
Query 873 ATGCTCATAAAAACGGTTTTGTGCTTGATTGTTTCCTTGGAACCGCTTTGATCGATATGT 932
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 837 ATGCTCACAAAAATGGTTTTGTGCTTGATTGTTTTCTTGGAACCGCTTTGATCGATATGT 896
Query 933 ATAGCAAATGTGGAAGCTTGCAGGACGCAAGGAAAGTATTTGACGTGATGCAGGGTAAGA 992
||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||
Sbjct 897 ATAGCAAATGTGGAAGCTTGCAGGATGCAAGGAAAGTCTTTGATGTGATGCAGAGTAAGA 956
Query 993 GTTTAGCGACTTGGAACTCGATGATCACTAGCTTAGGG-GTACATGGATGTGGTGAAGAG 1051
|||||||||||||||| ||||||||||||||||| ||| |||||||||||||| |||||
Sbjct 957 GTTTAGCGACTTGGAATTCGATGATCACTAGCTT-GGGAGTACATGGATGTGGAGAAGAA 1015
Query 1052 GCTTTGTCTCTGTTTGAAGAGATGGAAGAAGAAGCAAGCGTAGAACCAGACGCTATCAC- 1110
|||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 1016 GCTTTGTCTCTGTTTGAAGAGATGGAAGAAGAAGCAAGTGCAGAACCAGATGCTATCACG 1075
Query 1111 TTTCGTTGGTGTCTTATCCGCTTGTGCGAATACTGGAAATGTAAAGGATGGTTTGAGGTA 1170
||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 1076 TTT-GTTGGTGTCTTATCCGCTTGTGCAAATACCGGGAATGTAAAGGATGGTTTGAGGTA 1134
Query 1171 CTTTACTCGGATGATCCAAGTTTACGGTATCTCACCTATTCGAGAACATAATGCTTGTAT 1230
||| || ||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1135 CTTCACACGGATGATCCAAGTTTACGGTATCTCACCTATTCGGGAACATAATGTTTGTAT 1194
Query 1231 GATCCAATTGTTGGAGCAAGCCCTTGAGGTGGAGAAAGCTTCAAACTTGGTTGAATCCAT 1290
||||||||||||||||||||| || || ||||| |||||||| | | || ||||
Sbjct 1195 GATCCAATTGTTGGAGCAAGCTCTCGAAGTGGAAAAAGCTTC----T-GATT----CCAT 1245
Query 1291 GGATTCTGATCCAGACTTCAATTCTTCATTTGGTAATGAATACACGGATGGAA-TGAATG 1349
||||||||||||| ||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct 1246 GGATTCTGATCCAAACTTCAATTCTTCATTTGGTAATGAATACACAGATC-AAGTGAATG 1304
Query 1350 AAACGAACGAAACTCCGAGCCAACATCAAATTATGTTCACCAAGTGGGATACAGGCCGAT 1409
||| | |||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1305 AAAGGCACGAAACTCCGAGCCAGCATCAAATTATGTTCTCCAAGTGGGATACAGGCCGAT 1364
Query 1410 TTTGAAGGTTCAGTGTCTCTTGACATATATATTTTCGTCTATTAAACAGATTCATTGATC 1469
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1365 TTTGAAGGTTCAGTGTCTCTTGACATATATTTTTTCGTCCGTTAAACAGATTCATTGATC 1424
Query 1470 ATCTTTGTAACTATACAAGAAAAGCTCCTTCAAAAGTAGTGTAATGTCATGTACTTGTAA 1529
||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1425 ATCTTTGTAACTATAAAAGAAAAGCTCCTGCAAAAGTAGTGTAATCCCATGTACTTGTAA 1484
Query 1530 AAGGAATGG-G---AG-----CTTAAGCAGGGAAAATAGTAAATTCGATTTGTAATAGTG 1580
| ||||||| | || ||||||||| |||||||||||||||||||||||||| ||
Sbjct 1485 AGGGAATGGAGTTTAGATATGCTTAAGCAGTGAAAATAGTAAATTCGATTTGTAATAATG 1544
Query 1581 TCATGTATTTTGTAAACAGAT 1601
|||||||||||||||||||||
Sbjct 1545 TCATGTATTTTGTAAACAGAT 1565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60525399305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5