BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26640.1
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484430 jgi|Araly1|484430|fgenesh2_kg.5__422__AT3G26640.1 1779 0.0
Ahg920156 jgi|Araly1|920156|scaffold_101437.1 1146 0.0
> Ahg484430 jgi|Araly1|484430|fgenesh2_kg.5__422__AT3G26640.1
Length=1115
Score = 1779 bits (963), Expect = 0.0
Identities = 1066/1116 (96%), Gaps = 5/1116 (0%)
Strand=Plus/Plus
Query 6 AGAAGAAGACGAAGCAGAGGAATCTAGGGTTTATGC-TACATTGAAGCAA-AGATGGTTA 63
|||||||||||||||||||||||||||||||||||| | ||| ||||||| | ||||| |
Sbjct 2 AGAAGAAGACGAAGCAGAGGAATCTAGGGTTTATGCTTTCATCGAAGCAACA-ATGGTAA 60
Query 64 CGAGCAGCGATCAAATCCAAAATGGTTCTGAAGAGCAATCAAAAAGATCAGAGATTTACA 123
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 61 CGAGCAGCGATCAAATCCAAAATGGTTCCGATGAGCAATCAAAAAGATCAGAGATTTACA 120
Query 124 CATACGAAGCACCATGGCAGATCTACGCAATGAACTGGAGCATTCGTCGAGACAAGAAGT 183
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 CATACGAAGCACCATGGCAGATCTACGCAATGAATTGGAGCATTCGTCGAGACAAGAAGT 180
Query 184 ATCGGCTCGCAATCACAAGCCTCATCGAGCAATATCCGAATCGCGTCGAAATTGTTCAGC 243
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 ATCGACTCGCAATCACAAGCCTCATCGAGCAATATCCAAATCGCGTCGAAATTGTTCAGC 240
Query 244 TTGATGAATCAAATGGTGAGATTCGTTCAGATCCAAATCTCTGCTTCGAACATCCTTACC 303
||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 241 TTGATGAATCAAATGGTGAGATTCGATCAGATCCAAATCTTTGCTTCGAGCATCCTTACC 300
Query 304 CACCAACGAAAACCAGTTTCATACCCGATAAAGAATGTCAAAGACCCGATCTTTTAGCTA 363
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 CACCAACGAAAACCAGTTTCATTCCCGATAAAGAATGTCAAAGACCCGATCTTTTAGCTA 360
Query 364 CTTCTAGTGATTTCCTTCGTTTATGGCGAATCTCTGATGATGAATCTCGTGTTGAGCTTA 423
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTCTAGTGATTTTCTTCGTTTATGGCGAATCTCTGATGATGAATCTCGTGTTGAGCTTA 420
Query 424 AGTCTTGTCTTAGTAGTGATAAGAATAGTGAGTTTAGTGGTCCAATCACTTCATTTGATT 483
|||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||
Sbjct 421 GGTCTTGTCTTAGTAGTGATAAGAATAATGAGTTTAGTGGTCCTATTACTTCATTTGATT 480
Query 484 GGAATGAAGCTGAGCCTAGACGAATTGGTACTTCTAGTATTGATACCACTTGTACTATTT 543
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 481 GGAATGAAGCTGAGCCTAGACGAATTGGGACTTCTAGTATTGATACGACTTGTACTATTT 540
Query 544 GGGATATAGAGCGTGAAGTTGTTGATACCCAGCTTATTGCTCATGATAAAGAGGTTTATG 603
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 541 GGGATATAGAGCGTGAAGTTGTTGATACTCAGCTTATTGCTCATGATAAAGAGGTTTATG 600
Query 604 ACATTGCTTGGGGTGGTGTTGGTGTCTTT-GCCTCTGTCTCAGAGGATGGTTCCGTTAGA 662
|||||||||||||||| |||||||| ||| |||||||| ||||| |||||||||||||||
Sbjct 601 ACATTGCTTGGGGTGGAGTTGGTGT-TTTCGCCTCTGTTTCAGAAGATGGTTCCGTTAGA 659
Query 663 GTGTTTGATCTCCGTGATAAGGAGCATTCGACGATTATCTACGAGAGTGGTGAGCCTAGT 722
||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 660 GTGTTCGATCTCCGTGATAAGGAGCATTCGACGATTATCTATGAGAGTGGCGAGCCGAGT 719
Query 723 ACTCCTTTGGTGCGACTTAGTTGGAACAAGCAGGATCCGAGGTATATGGCTACTGTTATC 782
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 720 ACTCCTTTGGTGCGTCTTAGTTGGAATAAGCAGGATCCGAGGTATATGGCTACTGTTATC 779
Query 783 ATGGGCAGTGCTAAAATTGTTGTGTTGGATATTCGGTTTCCGGCTCTTCCTGTCGTGGAG 842
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 780 ATGGGCAGTGCTAAAATTGTTGTGTTGGATATTCGGTTTCCGGCTCTTCCTGTTGTGGAG 839
Query 843 CTTCAGCGACATCAGGCTAGTGTCAATGCTATAGCTTGGGCTCCTCATAGCTCTTCCCAT 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTTCAGCGACATCAGGCTAGTGTCAATGCTATAGCTTGGGCTCCTCATAGCTCTTCCCAT 899
Query 903 ATCTGCTCCGCTGGAGATGATTCTCAGGCGTTGATTTGGGATATATCTTCCATGGGACAG 962
|| ||| | ||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 900 ATTTGCACTGCTGGTGATGATTCTCAGGCGTTGATTTGGGATATTTCTTCGATGGGACAG 959
Query 963 CATGTTGAAGGTGGTCTGGATCCGATTCTAGCTTACACAGCCGGCGCTGAGGTTGAGCAG 1022
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 960 CATGTTGAAGGTGGTTTGGATCCGATTCTGGCTTACACAGCCGGCGCTGAGGTTGAGCAG 1019
Query 1023 CTTCAGTGGTCATCTTCTCAGCCTGATTGGGTTGCCATTGCCTTCTCTAACAAGCTGCAG 1082
|| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CTGCAATGGTCTTCTTCCCAGCCTGATTGGGTTGCCATTGCCTTCTCTAACAAGCTGCAG 1079
Query 1083 ATTCTCCGGGTCTGATTATGTTTTACAGATTTCTGT 1118
|||||| ||||||||||||| ||| |||||||||||
Sbjct 1080 ATTCTCAGGGTCTGATTATGGTTTCCAGATTTCTGT 1115
> Ahg920156 jgi|Araly1|920156|scaffold_101437.1
Length=1104
Score = 1146 bits (620), Expect = 0.0
Identities = 908/1049 (87%), Gaps = 12/1049 (1%)
Strand=Plus/Plus
Query 56 GATGGTTACGAGCAGCGATCAAATCCAAAATGGTTCTGAAGAGCAATCA-AAAAGATCAG 114
||||| ||||||||||||| || ||| ||||||| || |||| | || ||| | ||||
Sbjct 42 GATGGGAACGAGCAGCGATCCGATTCAAGATGGTTCCGATGAGC-AGCAGAAACGTTCAG 100
Query 115 AGATTTACACATACGAAGCACCATGGCAGATCTACGCAATGAACTGGAGCATTCGTCGAG 174
|||| |||||||||||||| |||||||| |||||||||||||| |||||| ||||||| |
Sbjct 101 AGATCTACACATACGAAGCTCCATGGCACATCTACGCAATGAATTGGAGCGTTCGTCGCG 160
Query 175 ACAAGAAGTATCGGCTCGCAATCACAAGCCTCATCGAGCAATATCCGAATCGCGTCGAAA 234
| |||||||| || ||||| ||||| |||||| |||||||||| ||||| || ||||| |
Sbjct 161 ATAAGAAGTACCGTCTCGCCATCACTAGCCTCCTCGAGCAATACCCGAACCGTGTCGAGA 220
Query 235 TTGTTCAGCTTGATGAATCAAATGGTGAGATTCGTTCAGATCCAAATCTCTGCTTCGAAC 294
|||| ||||| |||||||| ||||||||||| ||||| ||||| || |||| ||| || |
Sbjct 221 TTGTGCAGCTCGATGAATCCAATGGTGAGATCCGTTCCGATCCTAACCTCTCCTTTGAGC 280
Query 295 ATCCTTACCCACCAACGAAAACCAGTTTCATACCC-GATAAAGAATGTCAAAGACCCGAT 353
||||||||||||||||||| |||| |||||| ||| ||||||||||| |||||||| |||
Sbjct 281 ATCCTTACCCACCAACGAAGACCATTTTCAT-CCCTGATAAAGAATGCCAAAGACCTGAT 339
Query 354 CTTTTAGCTACTTCTAGTGATTTCCTTCGTTTATGGCGAATCTCTGATGATGAATCTCGT 413
||| | |||||||| ||||||||||||||||||||| ||||| |||||||| | || |||
Sbjct 340 CTTCTCGCTACTTCAAGTGATTTCCTTCGTTTATGGAGAATCGCTGATGATCATTCCCGT 399
Query 414 GTTGAGCTTAAGTCTTGTCTTAGTAGTGATAAGAATAGTGAGTTTAGTGGTCCAATCACT 473
|||||||| || |||||||| | ||| ||||||| ||||||||| ||||||| | |||
Sbjct 400 GTTGAGCTCAAATCTTGTCTCAATAGCAATAAGAACAGTGAGTTTTGTGGTCCTCTTACT 459
Query 474 TCATTTGATTGGAATGAAGCTGAGCCTA-GACGAATTGGTACTTCTAGTATTGATACCAC 532
|| ||||||||||| ||||||||||| | | |||||||| || ||||||| |||||| ||
Sbjct 460 TCTTTTGATTGGAACGAAGCTGAGCC-ACGCCGAATTGGAACATCTAGTACTGATACGAC 518
Query 533 TTGTACTATTTGGGATATAGAGCGTGAAGTTGTTGATACCCAGCTTATTGCTCATGATAA 592
||||||||| ||||| || |||||||||| ||||||||| ||||||||||||||||||||
Sbjct 519 TTGTACTATCTGGGACATTGAGCGTGAAGCTGTTGATACTCAGCTTATTGCTCATGATAA 578
Query 593 AGAGGTTTATGACATTGCTTGGGGTGGTGTTGGTGTCTTTGCCTCTGTCTCAGAGGATGG 652
|| |||| ||| ||||||||||||||||||||||| ||||||||||| |||| |||||
Sbjct 579 GGAAGTTTTTGATATTGCTTGGGGTGGTGTTGGTGTTTTTGCCTCTGTTTCAGCTGATGG 638
Query 653 TTCCGTTAGAGTGTTTGATCTCCGTGATAAGGAGCATTCGACGATTATCTACGAGAG-TG 711
||||||||| ||||||||||| |||||||| || ||||||||||||||||| ||||| |
Sbjct 639 TTCCGTTAGGGTGTTTGATCTTCGTGATAAAGAACATTCGACGATTATCTATGAGAGCT- 697
Query 712 GTGAGCCTAG-TACTCCTTTGGTGCGACTTAGTTGGAACAAGCAGGATCCGAGGTATATG 770
||||||| | ||||||||||||||| ||| ||||||||||||||||||| ||||| |||
Sbjct 698 CTGAGCCT-GATACTCCTTTGGTGCGTCTTGGTTGGAACAAGCAGGATCCTAGGTACATG 756
Query 771 GCTACTGTTATCATGGGCAGTGCTAAAATTGTTGTGTTGGATATTCGGTTTCCGGCTCTT 830
|||||| ||||||||| |||||||||| |||| ||| | || ||||| ||||||||||||
Sbjct 757 GCTACTATTATCATGGACAGTGCTAAAGTTGTGGTGCTCGACATTCGTTTTCCGGCTCTT 816
Query 831 CCTGTCGTGGAGCTTCAGCGACATCAGGCTAGTGTCAATGCTATAGCTTGGGCTCCTCAT 890
||||| ||||||||||| |||||||| |||||||||||||| || |||||||||||||||
Sbjct 817 CCTGTTGTGGAGCTTCAACGACATCAAGCTAGTGTCAATGCCATTGCTTGGGCTCCTCAT 876
Query 891 AGCTCTTCCCATATCTGCT-CCGCTGGAGATGATTCTCAGGCGTTGATTTGGGATATATC 949
||||||| || || || | | ||||||||||||||||| || |||||||||||||| ||
Sbjct 877 AGCTCTTGTCACATTTG-TACTGCTGGAGATGATTCTCAAGCCTTGATTTGGGATATTTC 935
Query 950 TTCCATGGGACAGCATGTTGAAGGTGGTCTGGATCCGATTCTAGCTTACACAGCCGGCGC 1009
||||||||||||||||||||||||||||| || || ||||| |||||||| || || ||
Sbjct 936 ATCCATGGGACAGCATGTTGAAGGTGGTCTTGACCCTATTCTCGCTTACACTGCTGGTGC 995
Query 1010 TGAGGTTGAGCAGCTTCAGTGGTCATCTTCTCAGCCTGATTGGGTTGCCATTGCCTTCTC 1069
|||| ||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||
Sbjct 996 TGAGATTGAGCAGCTTCAATGGTCCTCTTCTCAGCCTGATTGGGTCGCCATTGCTTTCTC 1055
Query 1070 TAACAAGCTGCAGATTCTCCGGGTCTGAT 1098
| ||||||||| |||||| |||| ||||
Sbjct 1056 CACCAAGCTGCAAATTCTCAGGGTTTGAT 1084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46243098321
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5