BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26650.1
Length=1543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484431 jgi|Araly1|484431|fgenesh2_kg.5__423__AT3G26650.1 2386 0.0
Ahg471443 jgi|Araly1|471443|fgenesh2_kg.1__1397__AT1G12900.1 1236 0.0
> Ahg484431 jgi|Araly1|484431|fgenesh2_kg.5__423__AT3G26650.1
Length=1529
Score = 2386 bits (1292), Expect = 0.0
Identities = 1456/1532 (95%), Gaps = 23/1532 (2%)
Strand=Plus/Plus
Query 1 ACAACCATAGAAACAAGTAAGAAAGCTATCCAGAATCTAATCTTATTTGCCTCCAAGTCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACAACCATAGAAACAAGTAAGAAAGCTATCCAGAATCTAATCTTATTTGCCTCCAAGTCA 60
Query 61 TCAATTCTTTATCCTATATTACTAGTCTCTGCTTCACCAATCCTTTTTGCTCTCCTGTCT 120
|||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||
Sbjct 61 TCAATTCTTTATCCTATATTACCAATCTCTGCTTCACCAATCCTTTTTGCTCT-CTGTCT 119
Query 121 GCTACAAACCTTAACTTGGATTCTTTCTGGTCACCATGGCTTCGGTTACTTTCTCTGTCC 180
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 120 GCTAC-AACCTTAACTTGGATTCTTTCTGGTCACCATGGCTTCGCTTACTTTCTCTGTGC 178
Query 181 CCAAGGGTTTCACTGAATTCTCAGGATTGCGAAGCTCCTCTGCTTCTCTTCCCTTCGGCA 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 179 CCAAGGGTTTCACTGAATTCTCAGGATTGCGAAGCTCCTCTGCTTGTCTTCCCTTTGGCA 238
Query 241 AGAAACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAATGGGAA 300
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 239 AGAAACTTTCTTCCGATGAGTTTGTTTCCATCGTATCCTTCCAGACTTCTGCAATGGGAA 298
Query 301 GCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAGGTGGCCATTAATGGAT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 299 GCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAGGTGGCCATCAATGGAT 358
Query 361 TCGGTAGGATCGGGAGGAACTTCCTGAGATGTTGGCATGGTCGCAAGGACTCTCCTCTTG 420
|||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 359 TCGGTAGGATTGGGAGGAACTTCTTGAGATGTTGGCATGGTCGCAAAGACTCTCCTCTTG 418
Query 421 ATATCATTGCCATTAATGACACTGGTGGCGTCAAGCAGGCTTCGCATTTACTTAAATACG 480
||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct 419 ATATCATTGCCATTAATGACACTGGTGGCGTCAAGCAGGCTTCCCATCTCCTTAAATACG 478
Query 481 ACTCTACTCTCGGAATCTTTGATGCTGATGTCAAACCTTCTGGAGAGACTGCAATCTCTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ACTCTACTCTCGGAATCTTTGATGCTGATGTCAAACCTTCTGGAGAGACTGCAATCTCTG 538
Query 541 TTGATGGAAAGATCATCCAAGTTGTCTCTAACCGAAACCCGTCTCTTCTCCCTTGGAAGG 600
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 539 TTGATGGAAAGATCATCCAAGTTGTTTCTAACCGAAACCCGTCTCTTCTCCCCTGGAAGG 598
Query 601 AGCTAGGAATTGACATTGTCATCGAAGGAACCGGAGTGTTTGTGGATAGAGAAGGTGCAG 660
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 599 AGTTAGGAATTGACATTGTCATCGAAGGAACCGGAGTGTTTGTCGATAGAGAAGGTGCAG 658
Query 661 GGAAACACATTGAAGCTGGTGCCAAGAAGGTTATCATTACTGCTCCAGGCAAAGGAGATA 720
||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 659 GGAAACACATTGAAGCTGGAGCCAAGAAGGTTATCATTACCGCTCCAGGGAAAGGAGATA 718
Query 721 TTCCAACTTATGTCGTTGGTGTCAATGCAGATGCTTACAGTCATGATGAACCTATCATCA 780
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 719 TTCCAACTTACGTCGTTGGTGTCAATGCAGATGCTTACAGTCATGATGAACCAATCATCA 778
Query 781 GCAATGCATCTTGCACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAAT 840
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GCAATGCATCTTGCACTACTAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAAT 838
Query 841 TCGGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGAGGTTGC 900
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTGGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGAGGTTGC 898
Query 901 TAGACGCGAGTCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTGAACATTGTTCCTA 960
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TAGACGCAAGTCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTGAACATTGTTCCTA 958
Query 961 CTTCTACAGGAGCAGCTAAAGCTGTGGCTCTTGTGCTCCCTAACCTCAAAGGAAAACTCA 1020
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 959 CATCTACAGGAGCAGCTAAAGCTGTGGCTCTTGTGCTCCCTAACCTCAAGGGAAAACTCA 1018
Query 1021 ACGGGATCGCTCTCCGTGTACCAACACCAAACGTATCAGTGGTTGATCTCGTTGTGCAGG 1080
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1019 ACGGAATCGCTCTCCGTGTACCTACACCAAACGTATCAGTCGTTGATCTCGTTGTGCAGG 1078
Query 1081 TCTCAAAGAAGACATTTGCTGAGGAAGTCAACGCTGCTTTCAGAGATTCTGCAGAGAAAG 1140
| |||||||| || |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1079 TTTCAAAGAAAACTTTTGCTGAGGAAGTTAACGCTGCTTTCAGAGATTCTGCTGAGAAAG 1138
Query 1141 AGCTTAAAGGTATACTCGATGTCTGCGATGAGCCACTAGTGTCCGTTGATTTCAGATGCT 1200
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1139 AGCTTAAAGGAATACTCGATGTCTGCGATGAGCCACTAGTGTCAGTTGATTTCAGATGCT 1198
Query 1201 CAGATTTTTCAACGACCATTGATTCATCACTCACTATGGTTATGGGAGATGATATGGTTA 1260
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CAGATTATTCAACGACCATTGATTCATCACTCACTATGGTTATGGGAGATGATATGGTTA 1258
Query 1261 AGGTGATTGCTTGGTATGATAATGAATGGGGTTACTCACAGAGAGTTGTTGACTTGGCTG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGGTGATTGCTTGGTATGATAATGAATGGGGTTACTCACAGAGAGTTGTTGACTTGGCTG 1318
Query 1321 ACATTGTTGCCAACAACTGGAAGTGATT-TCA-TC---AAA-C---TTTGTTTCATGttt 1371
|||||||||||||||||||||||||| | | | | ||| | ||||||||||||||
Sbjct 1319 ACATTGTTGCCAACAACTGGAAGTGAATGTAACTTTTGAAATCAACTTTGTTTCATGTTT 1378
Query 1372 ttccattt-tt-t-t---ctctttctcttttttACATTATGGTTCTCAAAATATCGGTGA 1425
|||||||| || | | |||||| | |||||||||||||| ||||||||||||||||||
Sbjct 1379 TTCCATTTATTCTCTTTTCTCTTTTTTTTTTTTACATTATGATTCTCAAAATATCGGTGA 1438
Query 1426 AGACTGTATAATTGTAGTA-TG-GATT-TGTAATA--AATAATCATAAACTATTCAAACT 1480
|||||||||||||||||| || | || || | | |||||| ||||||||||||||||
Sbjct 1439 AGACTGTATAATTGTAGTCCTGAG-TTATGGATTTGTAATAATAATAAACTATTCAAACT 1497
Query 1481 TGTTTACATTTTGTGTTTTGTGATACACTTTT 1512
||||||||||||||||||| ||| ||||||||
Sbjct 1498 TGTTTACATTTTGTGTTTTATGAAACACTTTT 1529
> Ahg471443 jgi|Araly1|471443|fgenesh2_kg.1__1397__AT1G12900.1
Length=1348
Score = 1236 bits (669), Expect = 0.0
Identities = 1008/1172 (86%), Gaps = 21/1172 (2%)
Strand=Plus/Plus
Query 184 AGGGTTTCACTGAATTCTCAGGATTGCGAAGCTCCTCTGCTTCTCTTCCCTTCGGCAAGA 243
|||||||| |||| ||||||||| | |||| |||||||| |||||||||| | |||||
Sbjct 41 AGGGTTTCTCTGAGTTCTCAGGACTCCGAAACTCCTCTG---CTCTTCCCTTTGCCAAGA 97
Query 244 AACT-TTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAATGGGAAGC 302
|| | ||||||||||||||| |||||| ||||| ||||| ||||||||||||||||||
Sbjct 98 AA-TCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAATGGGAAGC 156
Query 303 AGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAGGTGGCCATTAATGGATTC 362
| |||||||||||||||||| ||||| ||||||||| | ||||| ||||| | ||| |||
Sbjct 157 AATGGTGGATACAGGAAAGGAGTGACCGAGGCCAAGATAAAGGTAGCCATCAGTGGGTTC 216
Query 363 GGTAGGATCGGGAGGAACTTCCTGAGATGTTGGCATGGTCGCAAGGACTCTCCTCTTGAT 422
|||||||| || ||||||||| |||| |||||||||||||| ||||||||||||||||||
Sbjct 217 GGTAGGATTGGTAGGAACTTCTTGAGGTGTTGGCATGGTCGTAAGGACTCTCCTCTTGAT 276
Query 423 ATCATTGCCATTAATGACACTGGTGGCGTCAAGCAGGCTTCGCATTTACTTAAATACGAC 482
|| ||| |||||| ||||||||||| || || || || || ||| | || |||||||||
Sbjct 277 GTCGTTGTCATTAACGACACTGGTGGTGTTAAACAAGCATCACATCTCCTCAAATACGAC 336
Query 483 TCTACTCTCGGAATCTTTGATGCTGATGTCAAACCTTCTGGAGA-GACTGCAATCTCTGT 541
|| ||||| ||||||||||| ||||||||||||||||||||||| | | || |||||||
Sbjct 337 TCAACTCTTGGAATCTTTGACGCTGATGTCAAACCTTCTGGAGATG-CAGCTCTCTCTGT 395
Query 542 TGATGGAAAGATCATCCAAG-TTGTCTCTAACCGAAACCCGTCTCTTCTCCCTTGGAAGG 600
|||||||||||||| |||| |||| ||| | || ||||| ||| |||||| ||| ||
Sbjct 396 CGATGGAAAGATCAT-CAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGGG 454
Query 601 AGCTAGGAATTGACATT-GTCATCGAAGGAACCGGAGTGTTTGTGGATAGAGAAGGTGCA 659
| ||||| |||||| || || ||||||||||||||||||||||| || ||||| |||||
Sbjct 455 AACTAGGCATTGAC-TTGGTTATCGAAGGAACCGGAGTGTTTGTTGACAGAGATGGTGC- 512
Query 660 GGGAAA-CACATTGAAGCTGGTGCCAAGAAGGTTATCATTACTGCTCCAGGCAAAGGAGA 718
||||| ||| || | ||||| |||||||||||| | |||||||| || || ||||| ||
Sbjct 513 TGGAAAGCACCTTCAGGCTGGAGCCAAGAAGGTTCTAATTACTGCACCTGGAAAAGGTGA 572
Query 719 TATTCCAACTTATGTCGTTGGTGTCAATGCAGATGC-TTACAGTCATGATGA-ACCTATC 776
|| ||||||||||||||||| |||||||| || | ||| || ||||| || | | |||
Sbjct 573 CATCCCAACTTATGTCGTTGGCGTCAATGCTGA-ACTTTATAGCCATGAAGATA-CAATC 630
Query 777 ATCAGCAATGCATCTTGCACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAG 836
||||||||||| ||||| ||||| |||||||| ||||| || ||||| ||||||||||||
Sbjct 631 ATCAGCAATGCGTCTTGTACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAG 690
Query 837 AAATTCGGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGAGG 896
|||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||
Sbjct 691 AAATTCGGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAAGG 750
Query 897 TTGCTAGACGCGAGTCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTGAACATTGTT 956
||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 751 TTGTTAGATGCGAGCCACCGTGATCTAAGGAGAGCAAGAGCAGCAGCTTTGAACATTGTT 810
Query 957 CCTACTTCTACAGGAGCAGCTAAAGCTGTGGCTCTTGTGCTCCCTAACCTCAAAGGAAAA 1016
|| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 811 CCAACATCTACAGGAGCAGCCAAAGCTGTGGCTCTTGTGCTTCCTAACCTCAAAGGAAAA 870
Query 1017 CTCAACGGGATCGC-TCTCCGTGTACCAACACCAAACGTATCAGTGGTTGATCTC-GTTG 1074
||||| || ||||| | | ||||| ||||| |||||||| ||||||||||| || || |
Sbjct 871 CTCAATGGAATCGCAT-TGCGTGTGCCAACTCCAAACGTTTCAGTGGTTGA-CTTAGTCG 928
Query 1075 TGCAGGTCTCAAAGAAGACATTTGCTGAGGAAGTCAACGCTGCTTTCAGAGATTCTGCAG 1134
| |||||||| |||||||| |||||||| |||||||| ||||||||||||||| | || |
Sbjct 929 TTCAGGTCTCCAAGAAGACTTTTGCTGAAGAAGTCAATGCTGCTTTCAGAGATGCAGCTG 988
Query 1135 AGAAAGAGCTTAAAGGTATACTCGATGTCTGCGATGAGCCACTAGTGTCCGTTGATTTCA 1194
||||||||||||||||||||||||| ||||| |||||||| || || || ||||| ||||
Sbjct 989 AGAAAGAGCTTAAAGGTATACTCGACGTCTGTGATGAGCCTCTTGTCTCTGTTGACTTCA 1048
Query 1195 GATGCTCAGATTTTTCAACGACCATTGATTCATCACTCACTATGGTTATGGGAGATGATA 1254
| ||||| ||| | || | || |||||||| || ||||| |||||||||||||||||||
Sbjct 1049 GGTGCTCTGATGTATCCTCAACTATTGATTCTTCTCTCACAATGGTTATGGGAGATGATA 1108
Query 1255 TGGTTAAGGTGATTGCTTGGTATGATAATGAATGGGGTTACTCACAGAGAGTTGTTGACT 1314
||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| |
Sbjct 1109 TGGTTAAAGTGATTGCTTGGTATGACAATGAATGGGGTTACTCGCAGAGAGTCGTTGATT 1168
Query 1315 TGGCTGACATTGTTGCCAACAACTGGAAGTGA 1346
||||||||||||||||||| ||||||||||||
Sbjct 1169 TGGCTGACATTGTTGCCAATAACTGGAAGTGA 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57782901665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5