BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G26660.1

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936371 jgi|Araly1|936371|scaffold_500562.1                        586    4e-167


> Ahg936371 jgi|Araly1|936371|scaffold_500562.1
Length=409

 Score =  586 bits (317),  Expect = 4e-167
 Identities = 363/385 (94%), Gaps = 3/385 (1%)
 Strand=Plus/Plus

Query  1    AAAATC-TAAGATGAATCCAAAAAGATGTGCAGCTTGCAAGTATCTGAGAAGAAGATGTC  59
            |||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  13   AAAATCTTGAGATGAATCCAAAAAGATGTGCAGCTTGCAAATATCTGAGAAGAAGATGTC  72

Query  60   CAAAAGATTGCGTATTCTCACCATATTTCCCTCCAAACGATCCT-CAAAAATTTGCATGT  118
            ||||||||||| | ||||||||||||||||| |||||||||||| | |||||||||||| 
Sbjct  73   CAAAAGATTGCATTTTCTCACCATATTTCCCCCCAAACGATCCTGC-AAAATTTGCATGC  131

Query  119  GTCCACAGAATCTATGGTGCTGGAAACGTTTCCAAAATGCTTCAGCAACTTCCTGATCAG  178
             |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  132  ATCCACAGAATCTATGGTGCTGGTAATGTTTCCAAAATGCTTCAGCAACTTCCTGATCAG  191

Query  179  ACAAGAGCTGAAGCAGTGGAATCTTTGTGCTTTGAAGCAAAATGCAGAGTAGATGACCCT  238
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  192  ACAAGAGCAGAAGCAGTGGAATCTTTGTGCTTTGAAGCAAAATGCAGAGTAGATGATCCT  251

Query  239  GTTTATGGTTGTGTTGGCATTATTCATTTACTTAAAACTCAGATTCAGAAAACTCAGAAT  298
            ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||
Sbjct  252  GTTTATGGTTGTGTTGGCATTATTCATTTACTTCAAACTCAAATTCAGCAAACTCAGAAT  311

Query  299  GAATTAGCCAAAACTCAAGCTGAGATTGCTGTTGCTCAAACCAAACTTAGCCAAACCCAA  358
             | || ||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct  312  CAGTTGGCCAAAACTCAAGCTGAGATTGCTGTTGCTCAAACCAAATTTAGCCAAACCCAT  371

Query  359  AATTCTGATTTTATGTAATATCTCT  383
            |||||||||||||||||||||||||
Sbjct  372  AATTCTGATTTTATGTAATATCTCT  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13697856451


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5