BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26670.1
Length=1794
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484434 jgi|Araly1|484434|fgenesh2_kg.5__426__AT3G26670.2 2798 0.0
Ahg948956 jgi|Araly1|948956|scaffold_800843.1 379 3e-104
> Ahg484434 jgi|Araly1|484434|fgenesh2_kg.5__426__AT3G26670.2
Length=2025
Score = 2798 bits (1515), Expect = 0.0
Identities = 1695/1777 (95%), Gaps = 32/1777 (2%)
Strand=Plus/Plus
Query 22 GAGAGAACTTGT--GCAATCTGCATCTTCTGTTAGAAATCGATCTGGATCTGAAGCTCCT 79
||||| |||||| ||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 277 GAGAGGACTTGTAATCAATCTGCATCTTTTGTTAG-AGTCGATCTGGATCTGAAGCTCCT 335
Query 80 CTATCGTCCCTTCGCAGGTTTTATGCTTCTTCTCTTGAAGGCTAAGATTCATATGAGGGA 139
|||||||| ||||||||| || || || | | | || | | |||| |
Sbjct 336 CTATCGTCTCTTCGCAGG---TA---ATC-TC-C--G-A----AA-A--C--ATGA--G- 372
Query 140 GGCCTGAGCTAGTTGATTGGTTCAAGTTTGCAGCTTTAGATGATCCTTTAACTGAGCTAT 199
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 373 GGCCTGAGCTAGTTGATTGCTTCAAGTTTGCAGCTTTAGATGATCCTTTAACTAAGCCAT 432
Query 200 CTTCATTCTTTAATTACCAATGGGAGAGTGGGTCATCGGAGCTTTCATCAACATTTTTGG 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 CTTCATTCTTTAATTACCAATGGGAGAGTGGGTCATCGGAGCTTTCATCAACATTTTTGG 492
Query 260 AAGTGTTGCTATTAATTTTGGCACAAACCTTCTCAAATTGGGACATAATGAGAGAGAAAG 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 AAGTGTTGCTATTAATTTTGGCACAAACCTTCTCAAATTGGGACATAATGAGAGAGAAAG 552
Query 320 GTTAGCCCTACAAGATGGCGGAGGAAAGATGCCATTGAAGCCAATTATACATAATCAGAC 379
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 553 GTTAGCTCTACAAGATGGCGGAGGAAAGATGCCATTGAAGCCAATTATACATTTTCAGAC 612
Query 380 TTGGAGAGTTGGGATCCTTGTCTTTCTTCTTGGGAATTGCCTCAATTTCATTTCGTTTGG 439
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 TTGGAGAGTTGGGATTCTTGTCTTTCTTCTTGGGAATTGCCTCAATTTCATTTCGTTTGG 672
Query 440 TTATGCTGCTCAGTCCCTTCTAGCAGCTCTTGGATCCATTCAATTTGTATCCAACATAGC 499
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 673 TTATGCTGCTCAGTCCCTTCTAGCAGCTCTTGGATCTATTCAATTTGTATCTAACATAGC 732
Query 500 ATTTGCTTATGTTGTATTGAACAAAATGGTTACTGTCAAAGTACTCGTTGCTACAGCCTT 559
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 733 ATTTGCTTATGTTGTATTGAACAAAATGGTGACTGTCAAAGTACTCGTTGCTACAGCCTT 792
Query 560 TATAGTTCTTGGAAACGTTTTCCTTGTAGCTTTTGGTAATCACCAGTCACCAGTTTTCAC 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TATAGTTCTTGGAAACGTTTTCCTTGTAGCTTTTGGTAATCACCAGTCACCAGTTTTCAC 852
Query 620 ACCCGAACAGTTGGCAGAGAAATATAGCAATGTAACATTCTTGGTCTACTGTGGTATTTT 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 ACCCGAACAGTTGGCAGAGAAATATAGCAATGTAACATTCTTGGTCTACTGTGGTATTTT 912
Query 680 GATTTTAATAGTAGCCGTGCACCATTTCCTCTATAGGAAGGGAGAAGTTTTGATATCTAC 739
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 913 GATTTTAATAGTAGCTGTGCACCATTTCCTCTATAGGAAGGGTGAAGTTTTGATATCTAC 972
Query 740 ACCTGGACAAGAAATTAGCTCTTATTGGAAAATGCTGCTTCCTTTCTCATATGCAGTGGT 799
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 973 ACCTGGACAAGAAATTAGCTCCTATTGGAAAATGCTGCTTCCTTTCTCATATGCTGTGGT 1032
Query 800 CTCGGGTGCTATAGGATCATGTTCAGTTTTATTTGCCAAGTCACTCTCGAACTTGCTGAG 859
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1033 CTCGGGTGCTATAGGATCATGTTCGGTTTTATTTGCCAAGTCACTCTCAAACTTGCTGAG 1092
Query 860 ATTGGCCATGTCTAGTAGCTATCAACTGCACAGCTGGTTCACATACTCTATGCTTCTTTT 919
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1093 ATTGGCCATGTCTAGTAGCTATCAATTGCACAGCTGGTTCACATACTCTATGCTTCTTTT 1152
Query 920 ATTTCTTAGTACAGCCGGATTCTGGATGACAAGATTGAATGAAGGATTGTCTCTATATGA 979
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1153 ATTTCTCAGTACAGCCGGATTCTGGATGACAAGATTGAATGAAGGATTGTCTCTGTATGA 1212
Query 980 TGCAATTCTCATAGTTCCAATGTTTCAGATTGCTTGGACTTTCTTCTCCATCTGTACAGG 1039
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1213 TGCAATTCTCATAGTTCCAATGTTTCAGATTGCTTGGACTTTCTTCTCCATATGTACAGG 1272
Query 1040 ATGCATTTACTTTCAAGAGTTTCAGGTTTTCGATGCGCTAAGAACAACAATGTTCATATT 1099
|| ||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1273 ATTCATCTACTTTCAAGAGTTTCAGGTTTTCGATGCACTGAGAACAACAATGTTCATATT 1332
Query 1100 AGGAATGATGTGTGTATTCATAGGCATTTCTTTACTAGCACCTGATGATACAAGAGGCAA 1159
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1333 AGGAATGATGTGTGTATTCATAGGCATTTCTTTACTAGCACCTGATGATACAAGTGGCAA 1392
Query 1160 TGAGACAAAAGATAATTCATCATCTCTTGACTCCATCGTGTCCTCGAGTGTGCCAACTGA 1219
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 TGAGACAAGAGATAATTCATCATCTCTTGACTCCATCGTGTCCTCGAGTGTGCCAACTGA 1452
Query 1220 GGAGGACAGGTTGATACCACAATCATCTGAAGATGGACACAGCAAAGACACAAGAGTAGT 1279
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1453 GGAGGACAGGTTGATGCCACAATCATCTGAAGATGGACATAGCAAAGACACAAGAGTAGT 1512
Query 1280 TGTACAAGGAATGTATATGAAAGCAGCTGATTTAATTGCCAAGACAAAGACTGCTTGTTT 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 TGTACAAGGAATGTATATGAAAGCAGCTGATTTAATTGCCAAGACAAAGACTGCTTGTTT 1572
Query 1340 AGCAGCACTAGGATTTGGTGAAGACTCTATAAATGCATCTGCGATTCTAGTGATGCCAAT 1399
||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 AGCAGCATTGGGCTTTGGTGAAGACTCTATAAATGCATCTGCGATTCTAGTGATGCCAAT 1632
Query 1400 GGTATCTTCGAAGATTACAGGGTTTAGAGGAAACGGACTCGAACGGGCAAAGATTTTGTC 1459
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1633 GGTATCTTCGAAGATTACAGGGTTTAGAGGAAATGGACTCGAACGGGCTAAGATTTTGTC 1692
Query 1460 CATGAGAGGGTCAGGATGGAGCAAACTAGCCATGGAAGAAGAAGGAACAAGAATGCTTGA 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 CATGAGAGGGTCAGGATGGAGCAAACTAGCCATGGAAGAAGAAGGAACAAGAATGCTTGA 1752
Query 1520 AAAGACCATCTCTTCAAAGGCTTAAGTAGGTAGTGAAAACAGAAAGCATGAGACCGAATC 1579
||||||||| |||||||||||||||||||||||| ||||| || |||||||||| |||||
Sbjct 1753 AAAGACCATGTCTTCAAAGGCTTAAGTAGGTAGTTAAAACGGATAGCATGAGACAGAATC 1812
Query 1580 TCATGCACATTCTTCTCTTATCACATATG--TTGTAGTAGCAAAATCTGTTTTTAGGAAA 1637
||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 1813 TCATGTACATTCTTCTCTTATCATATATGGCTT-TAGTAGCAAAATCTGTTTTTAGGAAA 1871
Query 1638 CCATCCCACGATTGTGTATTCTTGCAAGAACCAAATTGTATTACATAACAACATCTCTGT 1697
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1872 CCATCCCACGATTGTGTATTCTTGTAAGAACCAAATTGTATTACATAACA---TCTCTGT 1928
Query 1698 ATATTCAtttttttGTTTGAGACCTGTGAAAAGTGTTTCATAAAGCACAAAATGTAAACA 1757
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1929 ATATTCATTTTTTTGTTTGAGACCTGTGAAAAGTGTTTCATAATGCACAAAATGTAACCA 1988
Query 1758 AGTTTGAATCGAGTTTATATTATTATTACAAATCCAT 1794
||||||| |||||||||||||||||||||||||||||
Sbjct 1989 AGTTTGATTCGAGTTTATATTATTATTACAAATCCAT 2025
> Ahg948956 jgi|Araly1|948956|scaffold_800843.1
Length=439
Score = 379 bits (205), Expect = 3e-104
Identities = 237/252 (94%), Gaps = 4/252 (2%)
Strand=Plus/Plus
Query 204 ATTCTTTAATTACCAATGGGAGAGTGGGTCATCGGAGCTTTCATCAACATTTTTGGAAGT 263
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 ATTCTTTAATAACC-ATGGGAGAGTGGGTCATCGGAGCTTTCATCAACATTTTTGGAAGC 65
Query 264 GTTGCTATTAATTTTGGCACAAACCTTCTCAAATTGGGACATAATGAGAGAGAAAGGTTA 323
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 GTAGCTATTAATTTCGGCACAAACCTTCTCAAATTGGGACATAATGAGAGAGAAAGGTTA 125
Query 324 GCCCTACAAGAT---GGCGGAGGAAAGATGCCATTGAAGCCAATTATACATAATCAGACT 380
|| |||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 126 GCTTTACAAGATAATGGCGGAGGAAAGATGCCATTGAAGCCAATTATACATTTTCAGACA 185
Query 381 TGGAGAGTTGGGATCCTTGTCTTTCTTCTTGGGAATTGCCTCAATTTCATTTCGTTTGGT 440
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TGGAGAGTTGGGATCCTTGTCTTTCTTCTTGGGAATTGCCTCAATTTCATTTCGTTTGGC 245
Query 441 TATGCTGCTCAG 452
|||| |||||||
Sbjct 246 TATGTTGCTCAG 257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67343553160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5