BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26680.1
Length=2132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484438 jgi|Araly1|484438|fgenesh2_kg.5__430__AT3G26680.2 2327 0.0
> Ahg484438 jgi|Araly1|484438|fgenesh2_kg.5__430__AT3G26680.2
Length=1955
Score = 2327 bits (1260), Expect = 0.0
Identities = 1403/1469 (96%), Gaps = 21/1469 (1%)
Strand=Plus/Plus
Query 2 ATGGATTTTTCTGATGAAGACGACGACGAAAACTGTTTTGGTTCTCGTTTCAACGACGGT 61
|||||||||||||||||||| | |||||| |||| ||||||||||||||||||||||||
Sbjct 93 ATGGATTTTTCTGATGAAGA--A-GACGAAGACTGGTTTGGTTCTCGTTTCAACGACGGT 149
Query 62 GTAAATgaagaagaagaagacgaagagggttttgtgtttaacgacgatgttgaagagaat 121
|| ||| ||||||| | | |||||||||||||||||| |||||||||||| ||| |||
Sbjct 150 GTTAAT---GAAGAAG-A-A-GAAGAGGGTTTTGTGTTTTACGACGATGTTGGAGAAAAT 203
Query 122 gaagaagaagaGGGTTTTGCGTCTGATTTCTATAAGGCTGGTTCTGATTGGTCTTGTTTA 181
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 GAAGAAGAGGAGGGTTTTGCGTCTGATTTCTATAAGGCTGGTTCTGATTGGTCTTGTTTG 263
Query 182 GTGGAAGATGAAGAGACTGTTTCTTCTTCT--G-TGAAG---AAGATGAAAC-AGTCGAA 234
|||||||||||||||||||||||||||||| | |||| |||||||||| || ||||
Sbjct 264 GTGGAAGATGAAGAGACTGTTTCTTCTTCTGAGAAGAAGAAAAAGATGAAACAAG-CGAA 322
Query 235 CTTGTTTCAGATTTGGGGTTTACAAGAGAATTCTCCTGATACAACGAAGAAGATGAAACA 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CTTGTTTCAGATTTGGGGTTTACAAGAGAATTCTCCTGATACAACGAAGAAGATGAAACA 382
Query 295 AACTGATTTGTTTCAGAGTTGGGGTTTACAAAAGCCTTCTCCTTTCACTTCACCTGCTTC 354
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 383 AACTGATTTGTTTCAGAGTTGGGGTTTACAAAAGCCTTCTCCTTTCACTTCCCCTGCTTC 442
Query 355 GAATTCGGCGAAGAAGACGACGAGTGCTCTTGGAAAAAGGCGTAGAGACTCTTCGTTTAG 414
||||||| |||| ||| ||||||||||||||||||| || ||||||||||||||||||||
Sbjct 443 GAATTCGTCGAAAAAGCCGACGAGTGCTCTTGGAAAGAGACGTAGAGACTCTTCGTTTAG 502
Query 415 CAATGACTCGCCTCGACCATGTCCATTTTACAAGAAACTTCCAGGAACACCGTTCACTGT 474
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 503 CAATGACTCGCCTCGACCATGTCCTTTTTACAAGAAACTTCCAGGAACACCGTTTACTGT 562
Query 475 GGATGCTTTTCGCTATGGTTGTGTTCAAGGATGTTCTGCTTATTTCCTTACTCATTTTCA 534
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 GGATGCTTTTCGTTATGGTTGTGTTCAAGGATGTTCTGCTTATTTCCTTACTCATTTTCA 622
Query 535 CGCTGATCATTACATTGGTCTCACTAAAGCTTGGTCTCATGGTCCTATTTACTGCTCCTC 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 CGCTGATCATTACATTGGTCTCACTAAAGCTTGGTCTCATGGTCCTATTTACTGCTCCTC 682
Query 595 TCTCACTAGTCGTCTTCTTAGACTTAGTCTCTCTGTTAATCCCTCGTCTATTCATCCATT 654
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 683 TCTCACTAGTCGTCTTCTTAGACTTAGTCTCTCTGTCGATCCCTCGTTTATTCATCCATT 742
Query 655 GGAGCTAGACGTTGAGTACACTATTAATGGGATTAAAGTCACTTTAATTGAAGCTAATCA 714
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 GGAGCTAGATGTTGAATACACTATTAATGGGATTAAAGTCACTTTAATTGAAGCTAATCA 802
Query 715 TTGCCCTGGTGCTGCTCTTATTCACTTTCGTCTCTTAGATGGAACATGTTATCTGCATAC 774
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 803 TTGCCCTGGTGCTGCTCTTATTCACTTTCGGCTCTTAGATGGAACGTGTTATCTGCATAC 862
Query 775 CGGAGATTTCAGGGCTTCTAAACAGATGCAAACGCATCCTCTCCTCTTTAACCAACGAGT 834
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 863 TGGAGATTTCAGGGCTTCTAAAAAGATGCAAACGCATCCTCTCCTCTTTAACCAACGAGT 922
Query 835 TCATGTTCTGTATTTGGATACAACATATTGCAATCCGAGATACAAATTCCCTTCTAAAGA 894
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 923 TCATGTTCTGTATTTGGATACAACTTATTGCAATCCGAGATACAAATTCCCCTCTAAAGA 982
Query 895 AGATGTGTTAAGTTATGTTGTGAGAATCACAAAGGATTTCCTCAGGAAGCAACCGAAGAC 954
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 AGATGTGTTAAGCTATGTTGTGAGAATCACAAAGGATTTCCTCAGGAAGCAACCGAAGAC 1042
Query 955 TCTGATTGTGGTTGGTTCTTACAGCATTGGAAAAGAATGTGTTTATCTTGCTATTGCCAA 1014
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1043 TCTGATTGTGGTTGGCTCTTATAGCATCGGAAAAGAATGTGTTTATCTTGCTATTGCCAA 1102
Query 1015 AGCTCTTGGGGTTAAGATATTTGCAAATGCTTCAAGAAGACGAATACTGCAATCTTTTGG 1074
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1103 AGCTCTTGGGGTTAAGATATTTGCAAATGCTTCAAGAAGACGGATACTGCAATCTTTTGG 1162
Query 1075 TTGGGATGATATTTCGAAGAATCTTTCTACAGATGGGAAAGCCACATGTCTTCATGTTCT 1134
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1163 TTGGGATGATATTTCGAAGAATCTTTCTACAGATGGGAAAGCAACATGTCTTCACGTTCT 1222
Query 1135 GCCTATGTCGTCATTGAAAGTTGAAAGACTCGATGAACACTTGAA-GATTTATAGAGAAC 1193
||||||||| ||| ||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 1223 GCCTATGTCATCACTGAAAGTTGAAAGACTCGACGAACACTTGAAAG-TTTATAGAGAAC 1281
Query 1194 AGTATGGAGCAGTTTTGGCATTTAGGCCCACAGGTTGGACTTACTCCGAGAAGATAGGTG 1253
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1282 AGTATGGAGCAGTTTTGGCATTTAGGCCCACAGGTTGGACTTACTCCGAGAAGATAGGCG 1341
Query 1254 AACACCTTGATCTGATAAAACCAACTTC-AAGGGGAAAAATCACCATTTATGGGGTGCCA 1312
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||
Sbjct 1342 AACACCTTGATCTGATAAAACCAACTTCTAAGGGGAAAA-TCACCATTTATGGGGTTCCA 1400
Query 1313 TATAGTGAGCATTCAAGCTTCACAGAGCTTCGTGAGTTTGTTCAATTCTTAAGGCCTGAT 1372
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1401 TATAGTGAGCATTCAAGCTTCACAGAACTTCGTGAGTTTGTTCAATTCTTAAGGCCGGAT 1460
Query 1373 AAGATTATTCCTACGGTGAACAATGGAAATGCTGGAACTCGCGAGAAAATGCAATCATGT 1432
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1461 AAGATTATTCCTACGGTGAACAATGGAAATGCTGGAGCTCGCGAGAAAATGCAATCATGT 1520
Query 1433 TTCAGAGAATGGCTCAGACGCTGAGTTTC 1461
||||||||||||||||||||||||| |||
Sbjct 1521 TTCAGAGAATGGCTCAGACGCTGAGATTC 1549
Score = 185 bits (100), Expect = 9e-46
Identities = 137/154 (89%), Gaps = 5/154 (3%)
Strand=Plus/Plus
Query 1453 CTG-AGTTTCTGAATCCCAATATGTTGATCATTGAAGCTTTCAAAGGATG-TGTGATGCT 1510
||| ||||||||||||||||||||||||||||||||||||| || ||| | | || ||||
Sbjct 1637 CTGCAGTTTCTGAATCCCAATATGTTGATCATTGAAGCTTTTAAGGGAGGCT-TGGTGCT 1695
Query 1511 TCTGTAAGATCTTGGTTATTGCAATTGGTGAATACAGTAGAT-TGAAATACTTGAAGGAT 1569
|||||||||| ||| | |||||| ||||||||||||||||| |||| |||||||||||
Sbjct 1696 TCTGTAAGATTTTGAT-ATTGCAGTTGGTGAATACAGTAGAACTGAAGCACTTGAAGGAT 1754
Query 1570 TCATAATATTCTTTGATCTAGATGTTTTATTCTT 1603
|||||||||||||||||| ||| |||||||||||
Sbjct 1755 TCATAATATTCTTTGATCAAGAGGTTTTATTCTT 1788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80218055970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5