BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26690.1
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936378 jgi|Araly1|936378|scaffold_500569.1 1059 0.0
Ahg471441 jgi|Araly1|471441|fgenesh2_kg.1__1395__AT1G12880.1 525 2e-148
> Ahg936378 jgi|Araly1|936378|scaffold_500569.1
Length=652
Score = 1059 bits (573), Expect = 0.0
Identities = 613/633 (97%), Gaps = 0/633 (0%)
Strand=Plus/Plus
Query 250 AAAAATGTCGAATCTTTCTGCAAGAACAGGACGAGACCATCAACGTTATGACAACAACTT 309
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 20 AAAAATGTCGAATCTTTCAGCAAGAACAGGACGAGACCATCAACGTTATGACAACAACTT 79
Query 310 CCGTCTTGTTTCTGGATGCATTCCGTATAGGCTGGTGAAAGATGAAGAAGAGGACTCAAC 369
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 80 CCGTCTTGTTTCTGGATGCATTCCCTATAGGCTGGTGAAAGATGAAGAAGAGGACTCAAC 139
Query 370 AAGTGTTGACTTTGAAAACAAGCTTCAAGTTCTTATGATTTCATCTCCTAATCGTCACGA 429
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 140 AAGTGTTGACTTTGAAAACAAGCTTCAAGTTCTTATGATTTCATCTCCCAATCGACACGA 199
Query 430 TCTTGTCTTCCCAAAGGGAGGATGGGAAGATGATGAAACTGTTCTTGAAGCTGCTTCTCG 489
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 TCTTGTCTTCCCTAAGGGAGGATGGGAAGATGATGAAACTGTTCTTGAAGCTGCTTCTCG 259
Query 490 TGAAGCTATGGAAGAAGCAGGAGTTAAAGGAATACTAAGAGAAGATCCATTAGGAGTTTG 549
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 260 TGAAGCTATGGAAGAAGCAGGAGTTAAAGGAATACTAAGAGAAGATCCATTAGGGGTTTG 319
Query 550 GGAATTTAGAAGTAAGAGTAGCAGTGTGGAAGCTGATTGCTGCTTAGGTGGTGGATGCAA 609
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 320 GGAATTTAGAAGCAAGAGTAGCAGTTTGGAAGCTGATTGCTGCTTAGGTGGTGGATGCAA 379
Query 610 AGGTTATATGTTTGCGTTAGAGGTGAAGGAAGAACTTGCGATATGGCCTGAGCAAGATGA 669
|||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||| |
Sbjct 380 AGGTTATATGTTTGCGTTAGAGGTTAAGGAAGAACTTGCTACATGGCCAGAGCAAGATAA 439
Query 670 CCGCGAGAGAAGATGGCTGAATGTAAAAGAAGCCTTGGAGCTGTGTCGGTATGAGTGGAT 729
|||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 440 CCGCGAGAGAAGATGGCTGAATGTTAAAGAAGCTTTGGAACTGTGTCGGTATGAGTGGAT 499
Query 730 GCAGAGCGCTCTTGAAGAGTTTCTACGAGTAATGGCAGAAGAAGGAAGCACAAAGGAAGA 789
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 500 GCAGAGCGCTCTTGAAGAGTTTCTAAGAGTAATGGCAGAAGAAGGAACCACAAAGGAAGA 559
Query 790 CTCTCTTGCCATTTCCAGCATTTCAAATCGAGGAGAGCGTCAAATTGATCCTCGCTACTG 849
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 560 CTCTCTTGCCATTTCCAGCATTTCAAATCGAGGAGAGCGTCAAATTGATCCTCGGTACTG 619
Query 850 CTTTGTAGTCTAACTAGTTTCGTTTCTCTAGGC 882
|||||||||||||||||||| ||||||||||||
Sbjct 620 CTTTGTAGTCTAACTAGTTTGGTTTCTCTAGGC 652
> Ahg471441 jgi|Araly1|471441|fgenesh2_kg.1__1395__AT1G12880.1
Length=931
Score = 525 bits (284), Expect = 2e-148
Identities = 456/536 (85%), Gaps = 23/536 (4%)
Strand=Plus/Plus
Query 252 AAATGTCGAATCTTTCTGCAAGAACAGGACGAGACCATCAACGTTATGACAACAACTTCC 311
|||||||| ||||||| | | ||||||||||| | ||||||||| |||||||||||||
Sbjct 257 AAATGTCGGTTCTTTCTTCTCGGACAGGACGAGATCGTCAACGTTACGACAACAACTTCC 316
Query 312 GTCTTGTTTCTGGATGCATTCCGTATAGGCTGGTGAAA---GATG-AA--GAAGAGGACT 365
|||| ||||||||||| ||||| ||||||||| | ||| || | || ||||| ||||
Sbjct 317 GTCTCGTTTCTGGATGTATTCCTTATAGGCTGATTAAAGCTGACGAAATTGAAGAAGACT 376
Query 366 CAACAAGTGTTGACTTTGAAAACAAGCTTCAAGTTCTTATGATTTCATCTCCTAATCGTC 425
||||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||
Sbjct 377 ---CAAGTGTTGACTTTGTTAACAAACTTGAAGTTCTTATGGTTTCATCTCCTAATCGTC 433
Query 426 ACGATCTTGTCTTCCCAAAGGGAGGATGGGAAGATGATGAAACTGTTCTTGAAGCTGCTT 485
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 434 ATGATCTTGTCTTCCCAAAGGGAGGGTGGGAAGATGATGAGACTGTTCTTGAAGCTGCTT 493
Query 486 CTCGTGAAGCTATGGAAGAAGCAGGAGTTAAAGGAATACTAAGAGAAGATCCATTAGGAG 545
|||||||||| || ||||||||||| |||||||||||||| ||||||| ||| |||||||
Sbjct 494 CTCGTGAAGCAATTGAAGAAGCAGGTGTTAAAGGAATACTTAGAGAAGTTCCTTTAGGAG 553
Query 546 TTTGGGAATTTAGAAGTAAGAGTAGCAGTGTGGAAGCTGATTGCTGCTTAGGTGGTGGAT 605
|||||||||||||||| || ||||||| ||||| | ||| || | |||||||| ||
Sbjct 554 TTTGGGAATTTAGAAGCAAAAGTAGCACAGTGGAGGATGAATG-T--TTAGGTGG---AT 607
Query 606 GCAAAGGTTATATGTTTGCGTTAGAGGTGAAGGAAGAACTTGCG-ATATGGCCTGAGC-A 663
||||||| ||||||||||| |||||||| | |||||||| | | || ||||| |||| |
Sbjct 608 GCAAAGGATATATGTTTGCATTAGAGGTTACCGAAGAACTCGAGGAT-TGGCCAGAGCGA 666
Query 664 AGATGA-CCGCGAGAGAAGATGGCTGAATGTAAAAGAAGCCTTGGAGCTGTGTCGGTATG 722
| | || |||| || | |||||| ||||||| |||||||| |||||||| ||||||||||
Sbjct 667 A-A-GAACCGCCAGCGGAGATGGTTGAATGTTAAAGAAGCGTTGGAGCTTTGTCGGTATG 724
Query 723 AGTGGATGCAGAGCGCTCTTGAAGAGTTTCT-ACGAGTAATGGCAGAAGAAGGAAG 777
||||||||||||| || |||||||||||| | | ||||||||| ||| ||||||||
Sbjct 725 AGTGGATGCAGAGAGCACTTGAAGAGTTTTTGA-GAGTAATGGAAGATGAAGGAAG 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38199162834
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5