BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26700.1
Length=2006
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484442 jgi|Araly1|484442|fgenesh2_kg.5__434__AT3G26700.1 2689 0.0
> Ahg484442 jgi|Araly1|484442|fgenesh2_kg.5__434__AT3G26700.1
Length=1951
Score = 2689 bits (1456), Expect = 0.0
Identities = 1574/1628 (97%), Gaps = 19/1628 (1%)
Strand=Plus/Plus
Query 389 GAATGTGGGGAATCACGTCATCGATTTTGTTGAATTTGTGTGATATTTAATCGCCGATGA 448
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 332 GAATGTGGGGAATCACGTCATCGA--TTGTTGAATTTTTGTGATATTTAATCGCCGATGA 389
Query 449 AGTTGAGATTTTCTGGAGATCTGTCAAGGGTTATCGCATGGTAGTAGAAGCTTGGAGCAT 508
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 390 AGTTGAGATTTTCTGGAGATCTGTCAAGGGTTATCGCATGGTAGTAGTAGCTTGGAGCAT 449
Query 509 CGGTGAGGAAAagagaaagagagagagaAGGCAGTTTTGTTTTCCAAATGTCAGCAATTC 568
||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 450 CGGTGAGAAAAAGAGAAAGAGAGAGAG-GGGCTGTTTTGTTTTCCAAATGTCAGCAATTC 508
Query 569 TTGCAGCTGCCATTGGTGGTGCTGTAGGAGCTCTTGCATTGATTGCTTTGTTTGTTTTTC 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 TTGCAGCTGCCATTGGTGGTGCTGTAGGAGCTCTTGCATTGATTGCTTTGTTTGTTTTTC 568
Query 629 TCCTTTGGTTTTGTGTCTTTCGTCGTAAGAATCTGTCTA-GAACTTCTGAGACTGGCTCT 687
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 569 TCCTTTGGTTTTGTGTCTTTCGTCGTAAGAATCTGTC-ACGAACTTCTGAGACTGGCTCT 627
Query 688 TCTGATCCATCTACTCAAGAAGGAAGAAATGTTGCAATTGAGTTGTCAATGAGAGAAGCT 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 TCTGATCCATCTACTCAAGAAGGAAGAAATGTTGCAATTGAGTTGTCAATGAGAGAAGCT 687
Query 748 AGAAGATTTGAAATGGAGGAACTTGCTCAAGCCACCAAGAGTTTTACCAATAAAAGTCTT 807
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 688 AGAAGATTTGAAATGGAGGAACTTGCTCAAGCCACAAAGAGTTTTACCAATAAAAGTCTT 747
Query 808 ATTGGTATTGGCAAATTCGGCGAGGTTTACAAAGGTTTGCTTCAAGATGGTGTTCTTGTA 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 ATTGGTATTGGCAAATTCGGCGAGGTTTACAAAGGTTTGCTTCAAGATGGTGTTCTTGTA 807
Query 868 GCTATCAAGAAAAGACCTGGTTTGCCTACTCAAGAATTTGTTAACGAGGTTCGTTATCTA 927
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 808 GCTATCAAGAAAAGACCTGGTTTGCCTACACAAGAATTCGTTAACGAGGTTCGTTATCTA 867
Query 928 TCGTCTATCCATCACCGTAATCTCGTCACTCTTTTGGGGTTTTGCCAAGAAAGCAACACA 987
||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 868 TCGTCTATCCATCACCGTAATCTTGTTACTCTTTTGGGGTTTTGCCAAGAAAGTAACACA 927
Query 988 CAGTTTCTTGTCTACGAGTATGTTCCTAATGGAAGTGTTTCCAGTCACCTGTACGGTGCT 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 CAGTTTCTTGTCTACGAGTATGTTCCTAATGGAAGTGTTTCCAGTCACCTGTACGGTGCT 987
Query 1048 GGTGGTAAAGTACCTGGTAATAGACTAGAGTTCAGACATAGGCTTGCAATATCTATAGGA 1107
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 988 GGTGGTAAAGTACCTGGAAATAGACTAGAATTCAGACATAGGCTTGCAATATCTATAGGA 1047
Query 1108 GCAGCTAAAGGCTTGGCACATCTTCACTCGTTGAGTCCTCGGTTGATACACAAGGACTTC 1167
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1048 GCTGCTAAAGGCTTGGCACATCTTCACTCGTTGAGTCCTCGATTGATACACAAGGACTTC 1107
Query 1168 AAAACCGCTAATGTTCTTGTGGATGAAAATTTCATTGCTAAGGTTGCGGATGCAGGAGTC 1227
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 AAAACCGCTAATGTTCTTGTGGATGAAAATTTCATTGCTAAGGTTGCGGATGCAGGAGTT 1167
Query 1228 CGTAACTTCTTAGGAAGAGAGGATGTTGGTACATCGTCTCACATTGTTGCAGACCAGATT 1287
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1168 CGTAATTTCTTAGGAAGAGAGGAAGTTGGTACATCGTCTCACATTGTTGCAGATCAGATT 1227
Query 1288 TTCCTCTCCCCAGAGGTTCAAGAGTTCAAAAGATTTTCAGAGAAAAGTGATGTCTATGCT 1347
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 TTCCTGTCCCCAGAGGTTCAAGAGTTCAAAAGATTTTCAGAGAAAAGTGATGTCTATGCT 1287
Query 1348 TTTGGTGTATTCCTCTTGGAATTAGTAAGTGGAAGAGAAGCATCAGAACCATCCCCTTCA 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 TTTGGTGTATTCCTCTTGGAATTAGTAAGTGGAAGAGAAGCATCAGAACCATCCCCTTCA 1347
Query 1408 AGCTCAACGCAAACTCTAGTCGATTGGATGCAAAACTTAACGGATTACGCAGATATACCA 1467
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1348 AGCTCAACGCAAACTCTAGTCGAATGGATGCAAAACTTAACGGATTACGCGGATATACCA 1407
Query 1468 ATGATGATTGATGAGAGACTAGGAGGTACATACACAGCAGAAGGAGTTGAGGAACTTATT 1527
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 ATGATGATCGATGAGAGACTAGGAGGTACATACACAGCAGAAGGAGTTGAGGAACTTATT 1467
Query 1528 ACATTGACACTAAGATGTGTTGATGTATCAAGTGAGAAGAGACCAACAATGAGTTTTGTT 1587
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1468 ACATTGACACTAAGATGTGTTGATGTATCAAGTGAAAAGAGACCAACAATGAGTTTTGTT 1527
Query 1588 GTGACAGAGCTTGAAAGAATATTGGATAAAGAAGTGAGCTTAACAACAGTAATGGGTGAA 1647
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1528 GTGACAGAGCTTGAGAGAATATTGGATAAGGAAGTGAGCTTAACAACAGTAATGGGTGAA 1587
Query 1648 GGTACTCCAACTGTTACTCTTGGAAGTCAGCTTTTTAAAGCAACCAAGTGATTATTATAA 1707
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1588 GGTACTCCAACTGTTACTCTTGGAAGTCAGCTTTTTAAAGCAACCAAGTGATTAT-A-AA 1645
Query 1708 AGGAACCATCTTTTTACatatatatacatatatata--tatatat-tat-ataAGTTCTC 1763
||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| ||||
Sbjct 1646 -GGAACCATCTTTTTACATATATATATATATATATACATATATATATATTATAAGCTCTC 1704
Query 1764 TGAGACAAGAACCAATCAGAGAACTTAAGGAGGA--A-GAAGAAGAAGACTGATCAGCTG 1820
|||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1705 TGAGACAAAAACCAATCAGAGAACTTAAGGAGGAGGAAGAAGAAGAAGACTGATCAGCTG 1764
Query 1821 TTTTGTGTTAAGTGTATAAAGAACAGCTGAAGCTTATTgtttgtttgttt-tttccctcc 1879
|||||||||||||||||||||||||||||| ||||||| ||| ||| ||| ||| |||||
Sbjct 1765 TTTTGTGTTAAGTGTATAAAGAACAGCTGA-GCTTATTATTTTTTTTTTTCTTTTCCTCC 1823
Query 1880 tttttcacttcctttggaggttattattttcagcaattatttttttGACAATGAGTGCAG 1939
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1824 TTTTTTACTTCCTTTGGAGGTTATTATTTTCAGCAATTATTTTTTTGACAATGAGTGCAG 1883
Query 1940 AAAAGTATAACTTTGTAAAAACATTATTTAT-T-GATATAAAGGAAGCAAAGAGTGGAAT 1997
|||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1884 AAAAATATAACTTTGTAAAAACATTATTTATATTGATATAAAGGAAGCAAAGAGTGGAAT 1943
Query 1998 GTTGTGTG 2005
||||||||
Sbjct 1944 GTTGTGTG 1951
Score = 326 bits (176), Expect = 5e-88
Identities = 310/367 (84%), Gaps = 39/367 (11%)
Strand=Plus/Plus
Query 1 GTTGCACAAGAGTAAAAACTAACCAAAGTAAAAAGTTTGATTCttgttgttgttgttgcc 60
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1 GTTGCACAAGAGTAATAACTAACCAAAGTAAAAAGCTTGATTCTTGTTGTTGTTGTTG-C 59
Query 61 gttgttgATTCTTAGTTAAGTAAGTAAAAAATTTTC-G-GTGAGTCTTAAGAAagagaga 118
||||||||||||||||||||||| ||||||||| | | ||||||| | |
Sbjct 60 --TGTTGATTCTTAGTTAAGTAAGT--AAAATTTTCAGTGAGAGTCTT---------A-A 105
Query 119 gagagagagagTTGTTGTCTGAAACGATGTCACTTTCTGTCGGCATTGTCTGCGTTCCGA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 GAGAGAGAGAGTTGTTGTCTGAAACGATGTCACTTTCTGTCGGCATTGTCTGCGTTCCGA 165
Query 179 CACAAGACTTGATttcttcttcttgttcttcttcttACCCTTTTACCTTCAAGTTGTTCT 238
|||||||||||||||||||||||| ||| ||||||| |||||| |||| ||
Sbjct 166 CACAAGACTTGATTTCTTCTTCTT---CTT------ACCCTTT-ACCTTCGAGTT---CT 212
Query 239 AGAAGAAACTGCGGCGGTTTGATTTGATGTTTCCATTGCTCTCTGTTCCGTT-TTCA-CA 296
|||||||||||||||| |||||||||||||||| |||||||| | ||| || ||| |
Sbjct 213 AGAAGAAACTGCGGCGCTTTGATTTGATGTTTC-ATTGCTCT-TCTTC--TTCTTCTTCT 268
Query 297 CCAAGCTT-TCT-TGTTTCTGATTAGAAAAATAATTTGATTCCTTGAATCTGCCGA-TAT 353
| | | || || ||||||||||||||| ||||||||| |||||||||||||| | |
Sbjct 269 TCTTGATAATCCCTGCTTCTGATTAGAAAAAGAATTTGATTTCTTGAATCTGCCGACTTT 328
Query 354 AAGGAAt 360
|||||||
Sbjct 329 AAGGAAT 335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75418685100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5