BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26730.1
Length=2572
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484446 jgi|Araly1|484446|fgenesh2_kg.5__438__AT3G26730.1 3496 0.0
> Ahg484446 jgi|Araly1|484446|fgenesh2_kg.5__438__AT3G26730.1
Length=2503
Score = 3496 bits (1893), Expect = 0.0
Identities = 2355/2565 (92%), Gaps = 83/2565 (3%)
Strand=Plus/Plus
Query 20 AAGTGAACACAGAAGAAGCGGTGGCTCTGAGCCGGCGAAATCTCCTTTCTCATCCCTAAA 79
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AAGTGAACACAGAAGAAGCGGTGGCTCTGAGCCGGCGAAATCTCCTCTCTCATCCCTAAA 60
Query 80 ATTTTCATGTCCATCTTGCCTCCTCCGATTATCCAAGGTCACAATTCG---TCTTCTCCT 136
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 61 ATTTTCATGTCCATCTTGCCTCCTCCGACTATCCAAGGTCACAATTCGTCTTCTTCTCCT 120
Query 137 TCTTCAGATTCCTCTCTAAACCCTAGCTCTGAGCATGGCAACAActcttcttcttctctc 196
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 121 TCTTCAGATTCCTCTCTAAACCCTAGCTCTGAGCATGGCAACAACTCTTCTCCTTC-C-C 178
Query 197 tctcctcttccctcctctcctccttcccggatctcttcttccACCGGAACTCGATTCTCC 256
||| | | ||| ||| || ||| ||| ||| ||| | | |||||
Sbjct 179 GGA--TCT-C--T--TCT--TCCA-CC-GGAACTCGA-TTCG-CCGCA-C---ATTCT-- 219
Query 257 GGACATTCTGAATCCTCTCACAATTTCTCCGGTGGCTCTAGGGAACCGAGTGTTGCAGCT 316
| | || | | | || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 220 G-A-ATCC--A--C-TC--ACAATTTCTCCGGTGGCTCTAGGGAACCGATTGTTGCAGCT 270
Query 317 GAGGAGGGACATAGCCGTGGATCTTCCAAAGAGATGACACAAAATGGAGCAGGGAAGGAG 376
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 271 GAGGAGGGACATAGCCGTGGATCTTCCAAAGAGATGACGCAAAATGGAGCAGGGAAGGAG 330
Query 377 AGTTTTTCCCCACCTAATGCAGATAAGCGTGACCATTTTCGATATGATGGTCGAAGGAAT 436
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 AGTTTTTCCCCATCTAATGCAGATAAGCGTGACCATTTTCGATATGATGGTCGAAGGAAT 390
Query 437 AGGTCTAGAGGGAGAGGTACTGGAGCTGCTGGTTCTTCTTCTTCT-C-----AATTGCAG 490
|||||||||||||||||| |||||||||||||||||||||||||| | || |||||
Sbjct 391 AGGTCTAGAGGGAGAGGTTCTGGAGCTGCTGGTTCTTCTTCTTCTTCTTCTCAAGTGCAG 450
Query 491 CATAATTCCGGACCTTTTAATTCTCCTAGAGGCGGTGTTTCGCATCATAATCCAACTGGT 550
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 451 TATAATACCGGACCTTTTAATTCTCCTAGAGGCGGTGTTTCGCATCACAATCCAACTGGT 510
Query 551 AGAAGAGCTAATATGATAAGTGGGAATCATTTACTGAATTTTCAGTATGATCCGATTTCG 610
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 AGAAGAGCTAATATGATAAGTGGGAATCATTTACTGAATTTTCAGTATGATCCGATTTCC 570
Query 611 CAACCGCAATCTAGGGGTCCTCCTCCGCCTCAAAGAAGGCAACAATATAAGGGGAGGCCT 670
| | ||||||||||||||||| ||||| || ||||||||||||| ||||||||||||
Sbjct 571 CCGTCACAATCTAGGGGTCCTCCACCGCC--AA-GAAGGCAACAATACAAGGGGAGGCCT 627
Query 671 TTTAACAAGGATTTGTTTCTTAAGGCCAATTATAAGTTTGTTGTGTTGGACACTGGAGAT 730
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 628 TTTAACAAGGATTTGTTTCTTAAGGCCAATTATAAGTTTGTTGTTTTGGACACTGGAGAT 687
Query 731 CATTCTCCTGATTCAATGGATCCTGATAAAATGCTGCAGTGGGATGATATTATTTGTGTA 790
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 CATTCTCCTGATTCCATGGATCCTGATAAAATGCTGCAGTGGGATGATATTATTTGTGTA 747
Query 791 AGGTATTCTACTCCGTCTCCTGTCCAGTGTCCGATTTGCTTGGAGTATCCTCTATGTCCG 850
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 748 AGGTATTCTACTCCGTCTCCTGTCCAGTGCCCGATTTGCTTGGAGTATCCTCTCTGTCCG 807
Query 851 CAGATTACTTCCTGTGGGCATATTTTCTGTTTCCCGTGTATTCTACAGTACCTGTTGACT 910
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 808 CAGATAACTTCCTGTGGGCATATTTTCTGTTTCCCGTGTATTCTACAGTACCTGTTGATT 867
Query 911 GGTGTTGATAACCACAAGGTGGACTGCTTCAAGAGGTGTCCTTTGTGCTTTGTGATGATT 970
||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 868 GGTGTCGATAACCACAAGGTGGAATGCGTCAAGAGGTGTCCTTTGTGCTTTGTGATGATT 927
Query 971 TCTCCAAGAGAGTTATACACTGTTTATATTGAGAACGTCAAGCAGTATTCTGTTGGAGAT 1030
||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||
Sbjct 928 TCTCCAAGAGAGTTATACACTGTTTATATCGAAAACGTCAAGCAGTGTTCTGTTGGAGAT 987
Query 1031 CCCATCGAGTTTGTACTTTTGACTCGCAAGAAAGATTCTTTTGCTCCTACCCGGAAAAAT 1090
||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 988 CCCATCGAGTTTGTACTTTTGACCCGCAAGAAAGATTCTTTTGCTCCAACTCGGAAAAAT 1047
Query 1091 GAGCATGACTTGGCTGTTCCTAATGGTGAAAATGAGATATATGATCCGTTCTCAAAGTTC 1150
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1048 GAGCATGACTCGGCTGTTCCTAATGGTGAAAATGAGATATATGATCCGTTTTCAAAGTTC 1107
Query 1151 ACTTTCACCCAAGATGTTGATCTCTCTGTCAGACAAGCAGTTTCAGAGTTAGACAGTTGG 1210
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1108 ACTTTTACCCAAGATGTTGATCTCTCTGTCAGACAAGCAGTTTCGGAGTTAGACAGTTGG 1167
Query 1211 ATTGCAAGAGCAGATCCTCAGCTCGTTGAAGACTTGGAGAAGCATCTTTATGTAAATGCC 1270
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1168 ATTGCAAGAGCAGATCCTGAGCTCGTTGAAGACTTGGAGAAGCATCTATATGTAAATGCT 1227
Query 1271 GCTTTAGAGCGTTTGGAGCAGAGAAAATTGTACTGGAATGAGCATAAGCTCTCT-ATTTA 1329
||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 1228 GCTTTGGAGCGTTTGGAGCAGAGAAAAATGTACTGGAATGAGCATAAGCTCTCTTATT-A 1286
Query 1330 CAGCAAAGTGTGCACAACGGCTAGAAATCAGACTCAATCATTGTCACCTCCTGATGTTTC 1389
||||||| || |||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1287 CAGCAAATTGAGCACAACGGCTAGAAATCAGACACAATCATTCTCACCTCCTGATGTTTC 1346
Query 1390 TCGAGTTGGTTATCAAGCACCCATGGGGGGC-CATGGAGCGCCAGATAGCGGCTCCAATG 1448
||||||||||||||||||||||| | |||| |||||||| ||||||| ||||||||||
Sbjct 1347 TCGAGTTGGTTATCAAGCACCCA-GCTGGGCGCATGGAGCAACAGATAGTGGCTCCAATG 1405
Query 1449 ATCAAGATAAATCAACTGAAGATTCTTCAGCGGATAAGTCAGATGGAGAATCTCAATCAA 1508
|||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| |
Sbjct 1406 ATCAAGATAAATCAGCTGAAGATTCTTCAGTGGATAAGTCCGATGGAGAATCTCAATCTA 1465
Query 1509 GTTTGGAAAAGGGTTGTGATAATGATCTTGGTCATCCTCTAGAAGATCA-AGACGCACCG 1567
||||||||||| |||||||||||| | |||||||||||| || | |||||||||
Sbjct 1466 GTTTGGAAAAGAGTTGTGATAATG-----G-TCATCCTCTAGATGA-CGTAGACGCACCA 1518
Query 1568 TCATCTTCCTCATGCAATGGAAGTAAAGGTTTCCTGTCTCACCAAATTGACACCAAAGAC 1627
||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||
Sbjct 1519 TCATCTTCCTCATGCAATGAAAGTAAAGGTTTCCTGTCGCACCAAAATGACACCAAAGAC 1578
Query 1628 CTGAAGGACAACGACGCGTACAACTTTTATCAGTCTGTTGATGGTCAGCACATTATCCTT 1687
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1579 CTGAAGGACAATGATGCTTACAACTTTTATCAGTCTGTTGATGGTCAGCACATTATCCTT 1638
Query 1688 CACACTTTGAATGTGAAGTGCCTTCTGCATCACTATGGAAGCTATGACTTTCTTCCACCA 1747
||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1639 CACCCTTTGAATTTGAAGTGCCTTCTGCATCACTATGGCAGCTATGACTTTCTTCCACCA 1698
Query 1748 AGATTGAGTGGAAAGATACTGGAAATGGAAACCATTACCCAATCAGAAGCGATAAGGAGA 1807
||| ||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct 1699 AGAGTGAGTGGAAAGATACTGGAAATGGAGACCGTTACCCAGTCAGAAGCGATAAGGAGA 1758
Query 1808 CGCTACCGCTTTTTAAGTCATTTTTCTTTATCAACTACACTTC-AGATATGTGAGATTGA 1866
|||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||||
Sbjct 1759 CGCTACCGCTTTTTAAGTCATTTTTCTTTAACAACTACA-TTCCAGATATGTGAAATTGA 1817
Query 1867 TATGAAGGAATCCTTGCCTCCTGATGCATTTGCTCCATTTATACATGAAATTAAGAAGCG 1926
||||| |||||| |||||||||||||| || |||||||||||| ||||||| ||||||||
Sbjct 1818 TATGAGGGAATCTTTGCCTCCTGATGCCTTCGCTCCATTTATAGATGAAATCAAGAAGCG 1877
Query 1927 TGAGAAGCAGCGGAAAGAACGTGCTTGGAAGGATCGAAAAAATAAAATCAAAGCTGAAGT 1986
|||||||||| | ||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1878 TGAGAAGCAGAGAAAAGACCGTGCTAGGAAGGATCGAAAAAATAAAATCAAAGCTGAAGT 1937
Query 1987 AGCTGCAGCTGCAGAGCTTGTACCATTGATGGCCAGTTTTGGGCAGTCGTCTTCTAGTGA 2046
||||||||||||||||||||||||||||||| |||||||||| ||||| ||| | ||||
Sbjct 1938 AGCTGCAGCTGCAGAGCTTGTACCATTGATGTCCAGTTTTGGACAGTCCTCT-C--GTGA 1994
Query 2047 TGACTTTCCCCCATTTTCCTTGGATGACTTTGAAGCTCTGGGAAACTCTGCCCCAATATC 2106
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1995 TGACTTTCCTCCATTTTCCTTGGATGACTTTGAAGCTCTTGGAAACTCTGCCCCAATATC 2054
Query 2107 ATCAAGCCCTCCAAACATTGGAGAGAGAAGTTCCTTCTCACATGTGACAAGGCTCGGTTT 2166
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2055 ATCAAGCCCTCCAAACATTGGAGAGAGAAGTTCCTTCTCACATGTGACGAGGCTCGGTTT 2114
Query 2167 CGCAGCTGGTCACGACTC-CCCAAACCTGAATAACGAGCCAACAAACGTTCAAagcagca 2225
|||||| || || ||||| ||||| | | | ||||||||||||||||| |||||||||||
Sbjct 2115 CGCAGCAGGCCATGACTCTCCCAA-CTTCAGTAACGAGCCAACAAACGCTCAAAGCAGCA 2173
Query 2226 gcagcagcagTGAAGTCTCAAACGCAACCACAGGTGCAAGAAACACAAACATAACATCCT 2285
|||||| | | ||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 2174 GCAGCA----T-A-GTCACAAACGCAACCACAGGTGCAAGAAACACAAACATAACATCAT 2227
Query 2286 TTGCGAGTGTAGCTTCAAGAACAACAACACCA--A-TGGCACCAACCGTCAAAGAGCCCG 2342
| || |||||| | |||||||||||||||||| | | ||||||||| |||||||||| |
Sbjct 2228 TCGCAAGTGTAACATCAAGAACAACAACACCACCAATCGCACCAACCATCAAAGAGCCTG 2287
Query 2343 GTAAGAGAGGGAAGAAAC-AGAGCCGAGTACTTCTATCGACAACTAGTGTACGCCGTTAC 2401
| |||||||||||||||| | |||||||| |||||||||||||| |||||||||||||||
Sbjct 2288 GAAAGAGAGGGAAGAAACCA-AGCCGAGTGCTTCTATCGACAACCAGTGTACGCCGTTAC 2346
Query 2402 TGAAAAGGCCTATG-GATTTGTGT-ATGTATAATAATCTTTTCATC-TAAGAAAAACTGA 2458
|||||||| |||| | || |||| |||||||||||||||||| || |||||||||||||
Sbjct 2347 TGAAAAGGACTATTTG-TT-GTGTTATGTATAATAATCTTTTC-TCCTAAGAAAAACTGA 2403
Query 2459 GTAAAGAAAGAACCAGAGATTATGGTGAGTGAGTAAGTGTAAAACTCAAACTTGGGCTTT 2518
|||| ||||||||||| ||| | || |||||||||| |||| ||||||||||||||||
Sbjct 2404 ATAAATAAAGAACCAGAAATT--G-TG-GTGAGTAAGTTTAAA-CTCAAACTTGGGCTTT 2458
Query 2519 GTTTCTTTTTGCAACCCATGTGACTGATAATGAAGGTGTCTCTCA 2563
||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 2459 GTTTCTTTTTGCAACCCATATGACTGATAATGAAGATGTCTCTCA 2503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96977763770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5