BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G26740.1

Length=712
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484447 jgi|Araly1|484447|fgenesh2_kg.5__439__AT3G26740.1          905    0.0  


> Ahg484447 jgi|Araly1|484447|fgenesh2_kg.5__439__AT3G26740.1
Length=601

 Score =  905 bits (490),  Expect = 0.0
 Identities = 558/590 (95%), Gaps = 8/590 (1%)
 Strand=Plus/Plus

Query  42   AACCAAAAGATCAA-TAGATTACAAAAATGCAGGGAGCTCTGTTTATCAAACCAACTAtt  100
            |||||||||||||| | ||||||||||||||||||  ||||||| ||||||||||| |||
Sbjct  19   AACCAAAAGATCAACT-GATTACAAAAATGCAGGGCTCTCTGTTCATCAAACCAACAATT  77

Query  101  cttcttcctcttccttcttcagtttcttctccaaaactcacttttcttcttcctcACGCA  160
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  78   CTTCTTCCTCTTCCTTCTTCAGTTTCTTCTCCAAAGCTCACTTTTCTTCTTCCTCAAGCA  137

Query  161  ACCAAAGCTTCAAGACTCTCATCTCTCAGATCAAACAACtcatcatcatcatcatcCTTA  220
            ||||||||||||||||||||||||||||||||||||||||||||||| ||  | |  | |
Sbjct  138  ACCAAAGCTTCAAGACTCTCATCTCTCAGATCAAACAACTCATCATC-TC--C-T--TCA  191

Query  221  ACGTCTGACCCTAACACCGTCGACTATAACTCCTCCATCCTTTCTGTTTTTCCAGCTGAA  280
            || ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  192  ACTTCTGATCCTAACACCGTCGACTACAACTCCTCCATCCTTTCTGTTTTCCCAGCTGAA  251

Query  281  GCATGCGAAGTAATCAGTGGATACGCTTGTTCTGCTGATATTTACCCTGAAGTCAAGCTC  340
            ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct  252  GCATGCGAAGTTATCAGTGGATACGCTTGTTCTGCTGACATATACCCTGAAGTCAAGCTC  311

Query  341  GATACAAAGCCCGTCTCACGTCCCGTGGCTTCAGAGCCCGTTGACAGAGAATACGAAGAG  400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  312  GATACAAAGCCCGTCTCACGTCCCGTGGCTTCAGAGCCCGTTGACAGAGAATACGAAGAG  371

Query  401  TATAACAGCCCCAAAACGGTTTTCCGTGAAGAGGCCTGCGATGATCTTGGAGGAGAATTC  460
            ||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  372  TATAACAACCCTAAAACGGTTTTCCGCGAAGAGGCCTGCGATGATCTTGGAGGAGAATTC  431

Query  461  TGTGAACCTGACTTTCAAAAAGATGCCAACTAGAAGAAACAAGATTTTATGTCATGTGAA  520
            |||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  432  TGTGAACCGGGCTATCAAAAAGATGCCAACTAGAAGAAACAAGATTTTATGTCATGTGAA  491

Query  521  TATGTGTTTGTATTTCTACAAGTCTTTGTAACCACTCCTTAATTTATGATATCTAGCTTC  580
            ||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct  492  TATGTGTTTGTATCTCTAGAAGTCTTTGTAACCACTCCTTAATTAATGATATCTAGCTTC  551

Query  581  ACTACTTAATCAAGATTGATGTTATGGATTAGACCCGAGTTCCCAAAGTT  630
            ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  552  ACTACTTAATCAAGATTGATGTTATGGATCAGACCCGAGTTCCCAAAGTT  601



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26190443979


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5