BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26744.1
Length=2046
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484449 jgi|Araly1|484449|fgenesh2_kg.5__441__AT3G26744.2 2726 0.0
Ahg911072 jgi|Araly1|911072|Al_scaffold_0001_1326 571 6e-162
> Ahg484449 jgi|Araly1|484449|fgenesh2_kg.5__441__AT3G26744.2
Length=1888
Score = 2726 bits (1476), Expect = 0.0
Identities = 1681/1777 (95%), Gaps = 26/1777 (1%)
Strand=Plus/Plus
Query 259 AAAGGTTCAGACTTTGGGGTAAAGGTGTCAACTTTGGCGATGGGTCTTGACGGAAACAAT 318
|||||||||||||||| ||||||||| ||||||||| |||||| ||||||||||||||||
Sbjct 125 AAAGGTTCAGACTTTGTGGTAAAGGTCTCAACTTTGACGATGGTTCTTGACGGAAACAAT 184
Query 319 GGTGGAGGGGTTTGGTTAAACGGTGGTGGTGGAGAAAGGGAAGAGAACGAGGAAGGTTCA 378
||||||||||||||||| | |||||||| |||||||| ||||||||||||||||||||
Sbjct 185 GGTGGAGGGGTTTGGTT--A-GGTGGTGGAGGAGAAAGAGAAGAGAACGAGGAAGGTTCT 241
Query 379 TGGGGAAGGAATCAAGAAGATGGTTCTTCTCAGTTTAAGCCTATGCTTGAAGGTGATTGG 438
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 242 TGGGGTAGGAATCAAGAAGATGGTTCTTCTCAGTTCAAGCCTATGCTTGAAGGTGATTGG 301
Query 439 TTTAGTAGTAACCAACCACATCCACAAGATCTTCAGATGTTACAGAATCAGCCAGATTTC 498
|| |||||||||| ||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 302 -TT--TAGTAACCAAACACATCCACAAGATCTTCAAATGTTACAGAATCAACCAGATTTC 358
Query 499 AGA-TACTTTGGTGGTTTTCCTTTTAACCCTAATGATAAtcttcttcttcaacactctat 557
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGATTTC-TTGGTGGTTTTCCTTTTAACCCTAATGATAATCTTCTTCTTCAACACTCTAT 417
Query 558 tgattcttcttcttcttgttctccttctCAAGCTTTTAGTCTTGACCCTTCTCAGCAAAA 617
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TGATTCGTCTTCTTCTTGTTCTCCTTCTCAAGCTTTTAGTCTTGACCCTTCTCAGCAAAA 477
Query 618 TCAGTTCTTGTCAACTAACAACAACAAGGGTTGTCTTCTCAATGTTCCTTCTTCTGCAAA 677
|||||||||||| ||| || |||||| ||||||||||||||||||||||||||||||
Sbjct 478 TCAGTTCTTGTCCACT---AATAACAAGTCTTGTCTTCTCAATGTTCCTTCTTCTGCAAA 534
Query 678 CCCTTTTGATAATGCTTTTGAGTTTGGCTCTGAATCTGGTTTTCTTAACCAAATCCATGC 737
||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||
Sbjct 535 CCCTTTTGATAATGCTTTTGAGTTTGGTTCTGAATCTGGTTTTCTTGGTCAAATTCATGC 594
Query 738 TCCTATTTCGATGGGGTTTGGTTCTTTGACACAATTGGGGAACAGGGATTTGAGTTCTGT 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TCCTATTTCGATGGGGTTTGGTTCTTTGACACAATTGGGGAACAGGGATTTGAGTTCTGT 654
Query 798 TCCTGATTTCTTGTCTGCTCGGTCACTTCTTGCGCCGGAAAGCAACAACAACAACACAAT 857
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 655 TCCTGATTTCTTGTCTGCTCGGTCGCTTCTTGGGCCGGAAAGCAACAACAACAACACAAT 714
Query 858 G-T-TGT-GT-G--GTGGT---TTCACAGCTCCGTTGGAGTTGGAAGGTTTTGGTAGTCC 908
| | ||| || | ||||| ||||||||||| |||||||| ||||| ||||| |||||
Sbjct 715 GTTATGTGGTGGAAGTGGTGGATTCACAGCTCCATTGGAGTTAGAAGGATTTGGAAGTCC 774
Query 909 TGCTAATGGTGGTTTTGTTGGGAACAGAGCGAAAGTTCTGAAGCCTTTAGAGGTGTTAGC 968
||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 775 TGCAAATGGCGGTTTTGTCGGGAACAGAGCGAAAGTTCTGAAGCCTTTGGAGGTGTTAGC 834
Query 969 ATCGTCTGGTGCACAGCCTACTCTGTTCCAGAAACGTGCAGCTATGCGTCAGAGCTCTGG 1028
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GTCGTCTGGTGCACAGCCTACTCTGTTCCAGAAACGTGCAGCTATGCGTCAGAGCTCTGG 894
Query 1029 AAGCAAAATGGGAAATTCGGAGAGTTCGGGAATGAGGAGGTTTAGTGATGATGGAGATAT 1088
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AAGCAAAATGGGAAACTCGGAGAGTTCGGGAATGAGGAGGTTTAGTGATGATGGAGATAT 954
Query 1089 GGATGAGACTGGGATTGAGGTTTCTGGGTTGAACTATGAGTCTGATGAGATAAATGAGAG 1148
|||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||
Sbjct 955 GGATGAGACTGGGATTGAGGTTTCAGGGTTGAATTATGAGTCTGATGAGCTAAATGAGAG 1014
Query 1149 CGGTAAAGCGGCTGAGAGTGTTCAGATTGGAGGAGGAGGAAAGGGTAAGAAGAAAGGTAT 1208
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1015 CGGTAAAGCGGCTGAGAGTGTTCAGATTGGAGGAGGAGGTAAGGGTAAGAAGAAAGGAAT 1074
Query 1209 GCCTGCTAAGAATCTGATGGCTGAGAGGAGAAGGAGGAAGAAGCTTAATGATAGGCTTTA 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GCCTGCTAAGAATCTGATGGCTGAGAGGAGAAGGAGGAAGAAGCTTAATGATAGGCTTTA 1134
Query 1269 TATGCTTAGATCAGTTGTCCCCAAGATCAGCAAAATGGATAGAGCATCAATACTTGGAGA 1328
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1135 TATGCTTAGATCAGTTGTCCCCAAGATAAGCAAAATGGATAGAGCATCAATACTTGGAGA 1194
Query 1329 TGCAATTGATTATCTGAAGGAACTTCTACAAAGGATCAATGATCTTCACAATGAACTTGA 1388
||||||||||||||| ||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 1195 TGCAATTGATTATCTCAAGGAACTTTTACAAAGGATCAACGATCTTCACAACGAACTTGA 1254
Query 1389 GTCAACTCCTCCTGGATCTTTGCCTCCAACTTCATCAAGCTTCCATCCGTTGACACCTAC 1448
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1255 GTCAACTCCTCCTGGATCTTTGCCTCCAACTTCATCAAGCTTCCATCCGTTAACGCCTAC 1314
Query 1449 ACCGCAAACTCTTTCTTGTCGTGTCAAGGAAGAGTTGTGTCCCTCTTCTTTACCAAGTCC 1508
|||||| ||||||||||| || ||||| |||||||| ||||| |||||||| ||||||||
Sbjct 1315 ACCGCAGACTCTTTCTTGCCGGGTCAAAGAAGAGTTATGTCCATCTTCTTTGCCAAGTCC 1374
Query 1509 TAAAGGCCAGCAAGCTAGAGTTGAGGTTAGATTAAGGGAAGGAAGAGCAGTGAACATTCA 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 TAAAGGCCAGCAAGCTAGAGTTGAGGTTAGATTAAGGGAAGGAAGAGCAGTGAACATTCA 1434
Query 1569 TATGTTCTGTGGTCGTAGACCGGGTCTGTTGCTCGCTACCATGAAAGCTTTGGATAATCT 1628
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1435 TATGTTCTGTGGTCGTAGACCGGGTCTCTTACTCGCTACCATGAAAGCTTTGGATAATCT 1494
Query 1629 TGGATTGGATGTTCAGCAAGCTGTGATCAGCTGTTTTAATGGGTTTGCCTTGGATGTTTT 1688
||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 1495 TGGATTGGATGTTCAGCAAGCCGTGATCAGCTGTTTCAACGGGTTTGCCTTGGATGTTTT 1554
Query 1689 CCGCGCTGAGCAATGCCAAGAAGGACAAGAGATACTGCCTGATCAAATCAAAGCAGTGCT 1748
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1555 CCGCGCTGAGCAATGCCAAGAAGGACAAGAGATATTGCCTGATCAAATCAAAGCAGTGCT 1614
Query 1749 TTTCGATACAGCAGGGTATGCTGGTATGATCTGATCTGATCCTGACTTCGAGTCCATTAA 1808
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1615 TTTCGATACAGCAGGGTACGCTGGTATGATCTGATCTGATCCTGAGTTCGAGTCCATTAA 1674
Query 1809 GCATCTGTTGAAGCAGAGCTAGAAGAACTAAGTCCCTTTAAATCTGCAATTTTCTTCTCA 1868
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1675 GCATCTGTTGAAGCAGAGCTAGAAGAACTAAGTCCCTTTAAATCTGCAGTTTTCTTCTCA 1734
Query 1869 ACtttttttCTTATGTCATAACTTCAATCTAAGCATGTAATGCAATTGCAAATGAGAGTT 1928
|||||||||||| | || ||||| |||| |||||| ||||||||||||||||||||||||
Sbjct 1735 ACTTTTTTTCTT-T-TCTTAACTACAATTTAAGCACGTAATGCAATTGCAAATGAGAGTT 1792
Query 1929 GTTTTTAAATTAAGCTTTTGAGAACTTGAGGTTGTTGTTGTTGGATACATAACTTCAACC 1988
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1793 GTTTTTAA-TTAAGCTTTTGAGAACTTGGGGTTGTTGTTGTTGGATACATAACTTCAACC 1851
Query 1989 T-TTTATT--AGCAATGTTAACTTCCATTTATGTTTC 2022
| ||| || | |||||||||||||||||||||||||
Sbjct 1852 TGTTTTTTTTATCAATGTTAACTTCCATTTATGTTTC 1888
Score = 69.4 bits (37), Expect = 1e-10
Identities = 45/48 (94%), Gaps = 3/48 (6%)
Strand=Plus/Plus
Query 199 GAATTGTCTTCAAGCTTCCAAATTTCAGTTAAA-GGTCTCA-ACTTTG 244
||||||||||||||||||||||||||||||||| ||| ||| ||||||
Sbjct 94 GAATTGTCTTCAAGCTTCCAAATTTCAGTTAAAAGGT-TCAGACTTTG 140
> Ahg911072 jgi|Araly1|911072|Al_scaffold_0001_1326
Length=1353
Score = 571 bits (309), Expect = 6e-162
Identities = 504/594 (85%), Gaps = 29/594 (5%)
Strand=Plus/Plus
Query 1188 AAAGGGTAAGAAGAAAGGTATGCCTGCTAAGAATCTGATGGCTGAGAGGAGAAGGAGGAA 1247
||| |||||||||||||| |||||||| |||||||| ||||||||||| ||||| |||||
Sbjct 772 AAA-GGTAAGAAGAAAGGAATGCCTGCAAAGAATCTAATGGCTGAGAGAAGAAGAAGGAA 830
Query 1248 GAAGCTTAATGATAGGCTTTATATGCTTAGATCAGTTGTCCCCAAGATCAGCAAAATGGA 1307
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 831 GAAGCTTAATGATAGGCTTTACATGCTTAGATCAGTTGTTCCCAAGATCAGCAAAATGGA 890
Query 1308 TAGAGCATCAATACTTGGAGATGCAATTGATTATCTGAAGGAACTTC-TACAAAGGATCA 1366
||||||| |||||||||||||||| |||||||| || || || | || |||| || ||||
Sbjct 891 TAGAGCAGCAATACTTGGAGATGCTATTGATTACCTCAAAGAGC-TCTTACAGAGAATCA 949
Query 1367 ATGATCTTCACAATGAACTTGAGTCAACTCCTCCTGGATCTTTGCCTCCAACTTCATCAA 1426
| |||||||| | ||||| ||||| ||||| || || | ||| ||||
Sbjct 950 ACGATCTTCATACCGAACTAGAGTCTACTCCACC--GA-----G--------TTCTTCAA 994
Query 1427 GCTTCCATCCGTTGACACCTACACCGCAAACTCTTTCTTGTCGTGTCAAGGAAGAGTTGT 1486
|||| || ||||| ||||| || || ||||| || |||| ||||| |||||||||||||
Sbjct 995 GCTTGCACCCGTTAACACCGACTCCACAAACGCTATCTTACCGTGTTAAGGAAGAGTTGT 1054
Query 1487 GTCCCTCTT-CT--TTACCAAGTCCTAAAGGCCAGCAAGCTAGAGTTGAGGTTAGATTAA 1543
|||| |||| || || ||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 1055 GTCCATCTTCCTCCTTGCCAAGCCCTAAAGGCCAGCAACCGAGAGTTGAGGTTAGATTAA 1114
Query 1544 GGGAAGG-AAGAGCAGTGAACATTCATATGTTCTGTGGTCGTAGACCGGGTCTGTTGCTC 1602
||||||| ||| |||||||||||||| ||||||||||| |||||||| ||||| |||||
Sbjct 1115 GGGAAGGAAAG-GCAGTGAACATTCACATGTTCTGTGGACGTAGACCAGGTCTTTTGCTT 1173
Query 1603 GCTACCATGAAAGCTTTGGATAATCTT-GGATTGGATGTTCAGCAAGCTGTGATCAGCTG 1661
| ||||||| |||||||||||| ||| |||||||||||||| ||||||||||| |||||
Sbjct 1174 TCCACCATGAGAGCTTTGGATAA-CTTAGGATTGGATGTTCAACAAGCTGTGATTAGCTG 1232
Query 1662 TTTTAATGGGTTTGCCTTGGATGTTTTCCGCGCTGAGCAATGCCAAGAAGGACAA-GA-G 1719
||| || || ||||| |||||||||||||||||||||||||||||||||| || | || |
Sbjct 1233 TTTCAACGGTTTTGCTTTGGATGTTTTCCGCGCTGAGCAATGCCAAGAAG-ACCATGACG 1291
Query 1720 ATACTGCCTGATCAAATCAAAGCAGTGCTTTTCGATACAGCAGGGTATGCTGGT 1773
| ||||||| |||||||||||||||||||| || |||||||| || ||||||
Sbjct 1292 -TGTTGCCTGAACAAATCAAAGCAGTGCTTTTAGACACAGCAGGTTACGCTGGT 1344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76942294900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5