BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26750.1
Length=2104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484450 jgi|Araly1|484450|fgenesh2_kg.5__442__AT3G26750.1 2170 0.0
> Ahg484450 jgi|Araly1|484450|fgenesh2_kg.5__442__AT3G26750.1
Length=1712
Score = 2170 bits (1175), Expect = 0.0
Identities = 1461/1597 (91%), Gaps = 28/1597 (2%)
Strand=Plus/Plus
Query 364 AAAA-ATCGAAGCAGAGCAATTTCTAATTCCATGGAGCAAAACTCTAAAACCCAGAGGAC 422
|||| |||||| |||||||| | | ||| |||||||||||| ||||||||||||||||
Sbjct 50 AAAACATCGAAACAGAGCAA--T-T--TTCAATGGAGCAAAACCCTAAAACCCAGAGGAC 104
Query 423 ATGGAGATACACATGGGAAGCTCAATCTCATTCTCCAAACCTTCGTCTCTTTCTTTTCGA 482
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 105 ATGGAGATACACATGGGAAGCTCAATCTCATTCTCCTAATCTTCGTCTCTTTCTTTTCGA 164
Query 483 TTCCAAAACTAACCCTAAGATCCACTGCAAAAGCCTCAATGTATCAACCATCGTCGGAAA 542
||||| ||| |||||||||||||||||||||| ||||||||| |||| |||| ||| |||
Sbjct 165 TTCCACAACAAACCCTAAGATCCACTGCAAAATCCTCAATGTCTCAATCATCCTCGAAAA 224
Query 543 ATCTCAACTTCTCGTCACATGGATCAACGAAGAAGATGAAGAAGCTGCAAGCAAAGAAGA 602
|||||||||||||||||||||||| | | |||||||||| || ||||||||||
Sbjct 225 ATCTCAACTTCTCGTCACATGGAT---C-----A-ATGAAGAAGCCACACGCAAAGAAGA 275
Query 603 GATTGTTTCTCTTCTA-GTTCCTATCCCTAGGGTCTTACTAGATACTGAATCTCCTGTAA 661
|||||||||||||| | ||||| || |||| ||| ||||| ||||||||||||| |||||
Sbjct 276 GATTGTTTCTCTTC-ATGTTCCGATTCCTAAGGTTTTACTTGATACTGAATCTCATGTAA 334
Query 662 ATTTCAAAGCTTTAGACGATCACATCGAGGTTAGACTTGTTCTGTTACTCCCTGTTGATC 721
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 335 ATTTCAAAGCTTTAGAGGATCACATCGAGGTAAGACTTGTTCTGTTACTCCCTGTTGATC 394
Query 722 ATCCTTTAGTCTCAGACTTCAATTTGGTGACTGATTCTAGAGAAAAGTCGGCGCCTTTAG 781
||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 395 ATCCTCTAGTCTCAGACTTCAATTTAGTGACTGATTCTAGAGAAAAGTCGAAGCCTTTAG 454
Query 782 TGATGGGTTATGATCTAAAGACTCTATCTTTAATGGGAGGAGTTCATTTTTACTGTAGAA 841
|||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 455 TGATGGGTTATGATTTGAAGACTCTATCTTTAATGGGAGGAGTTCACTTTTACTGTAGAA 514
Query 842 GTTGTTCAAATAGGTTAACAAAGAAGGAACTTTTAGATTTCTCAGAAATGCCGTCTATTA 901
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 515 GTTGCTCAAATAGGTTAACAAAGAAGGAACTTTTCGATTTCTCTGAAATGCCGTCTATTA 574
Query 902 ATTGGAGAGAATCAGCTGATAATTGGTTTGGTACTTGTTGTTGTTCATTTGGTGGAATTA 961
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 ATTGGAGAGAATCTGCTGATAATTGGTTTGGTACTTGTTGTTGTTCATTTGGTGGAATTA 634
Query 962 GTGAGAAGATGGTTGTTAAGTACACGAATTCGTATACTTGCTCTAGTGGGTTGTGTTTAC 1021
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 635 GTGAGAAGATGGTAGTTAAGTACACGAATTCGTATACTTGCTCTAGTGGGTTGTGTTTGC 694
Query 1022 TTAGTGCTACTACTGTGTTGCTTAGCAAAGATGATCTTGTAGAGTGTATCTTGTCTGAGA 1081
|||||||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||| |
Sbjct 695 TTAGTGCTACTACTGTTTTGCTTAGCAAGGATGATCTTGTAGAGTGTAGCTTTTCTGATA 754
Query 1082 AAGGTGGAACTGAAGTCGAATTTGAGTCGAGTTTAGCTTTGAGTTGTGATGTTGGTGTAG 1141
||||||||| || || ||||||||| |||||| ||||| ||||||||||| |||||||||
Sbjct 755 AAGGTGGAATTGTAGACGAATTTGATTCGAGTGTAGCTCTGAGTTGTGATATTGGTGTAG 814
Query 1142 TTGAACCGGGTTCTAGAATTAGTGAAGGAAATGCTGAGAGTCATGAGAGTGGAGGTGAGA 1201
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 815 TTGAACCGGGTTCTAGAAGTAGTGAAGGAAATGCTGAGAGTCATGAGAATGGAGGTGAGA 874
Query 1202 ATGTTTGTGGTCAAGTGGATGAATCGAAGACGCGTTGTATAGATAAGGCATCACTACCTG 1261
|||||| ||||||| |||||| |||| ||||||||||| ||| | |||||||||||
Sbjct 875 GTGTTTGCGGTCAAGCGGATGACTCGATTTTGCGTTGTATAGGTAATGAATCACTACCTG 934
Query 1262 GATGTTGTGTACATGACTCGCCTGACTCTAATGAGAGTGTTCAGCTGGAGGAGAAGAAAC 1321
| |||||||||||||||| ||||||||||||||||||| ||||| | |||| ||||||
Sbjct 935 GGTGTTGTGTACATGACTTGCCTGACTCTAATGAGAGTTTTCAG-T--TGGAGCAGAAAC 991
Query 1322 TTACACTTGATAAGAAGTTTCTTCTTGATGGGTTTCTTGAGGATGTTTTTATGGCGAAAG 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 TTACACTTGATAAGAAGTTTCTTCTTGATGGGTTTCTTGAGGATGTTTTTATGGCGAAAG 1051
Query 1382 CGTCAAATGTGTCAAAGAATGTCGAGTGGATTGAATTTGCTTGCCCTGAGTGTTCCTCTC 1441
| || |||||||| ||||||||||| |||||||||||||||||||| |||||| |||||
Sbjct 1052 CATCGAATGTGTCGAAGAATGTCGACTGGATTGAATTTGCTTGCCCAAAGTGTTACTCTC 1111
Query 1442 CTCTTGGAGCCTATCCTTCTGGTGTTGGGAGCAACGG-TAAACCCATTGATGGTGGAGTT 1500
|||||||||| ||||||||||||| ||| ||||| || ||||||||| ||||||||||||
Sbjct 1112 CTCTTGGAGCTTATCCTTCTGGTGGTGGAAGCAA-GGATAAACCCATAGATGGTGGAGTT 1170
Query 1501 AGACTCTTCAAATGCTATATTTCCACATCATCGACGACGGGTGAATCCTCTGAC-GTTTT 1559
||||||||||||||||||||||||||||||||| |||||||||||||| | | |||||
Sbjct 1171 AGACTCTTCAAATGCTATATTTCCACATCATCGGTGACGGGTGAATCCT-TAAATGTTTT 1229
Query 1560 CAGGAAATACACATTGGAAAGAATGTTTACGAATCAGCTAGTGGAATGCTCCAAAGAGGA 1619
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 1230 CAGGAAATACACATTGGAAAGAATGTTTACCAATCAGCTAGTGGAATGCGCCAAAGAAGA 1289
Query 1620 GTTATCATTTCACGTGTTGGTCAAAGATTTGACAACTAAATCACCTCTGTTCAACATCGT 1679
|||||||||||| ||||||||||||||| ||||||| ||||| ||||||||||| |||||
Sbjct 1290 GTTATCATTTCATGTGTTGGTCAAAGATCTGACAACCAAATCCCCTCTGTTCAATATCGT 1349
Query 1680 TATTTTGAATCCAAACACATTT-TCCTCGACTGGTCTTTGCTCGAGCCAAGATGAACCAG 1738
||| ||||||||||| | || ||||||||||||||||||||||||| |||||||||||
Sbjct 1350 TATCCTGAATCCAAACTC-TTGGTCCTCGACTGGTCTTTGCTCGAGCCGAGATGAACCAG 1408
Query 1739 GTTCCGCATTAGAGTTAAGCGCTATTGTGAAGGTTCTGTTTTCTGATTGCAACAGCTCGG 1798
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1409 ATTCCACATTAGAGTTAAGCGCTATTGTGAAGGTTCTGTTTTCAGATTGCAACAGCTCGG 1468
Query 1799 TAGTGAAGAAGATTGATGAAGAAGTATACATTTTGAAGGGACAAGGAGAGGAGTTGATAG 1858
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1469 TAGCAAAGAAGATTGATGAAGAAGTTTACATTTTGAAGGGACAAGGAGAGGAGTTGATAG 1528
Query 1859 AGTTAATAACGA-ATGCAAGCAAATTTCTTCCATCTTCGTGTTCATATCTTCAAGGCGCA 1917
||||||||| | |||| |||||||||||||||||||||| | |||||||||| ||| ||
Sbjct 1529 AGTTAATAAA-ATATGCGAGCAAATTTCTTCCATCTTCGTATACATATCTTCAGGGCTCA 1587
Query 1918 CTTGTCTCATCGATGCATCTATGATAATGAATCTTTT 1954
||||||||||| ||||||| |||||||||||||||||
Sbjct 1588 CTTGTCTCATCAATGCATCGATGATAATGAATCTTTT 1624
Score = 62.1 bits (33), Expect = 2e-08
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 2068 TTTGGTTTTTCAATTGAATGAAAGGAATATTTCTTC 2103
|||| |||||||||||||||||||||||||||||||
Sbjct 1677 TTTGTTTTTTCAATTGAATGAAAGGAATATTTCTTC 1712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79151529110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5