BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26760.1
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484451 jgi|Araly1|484451|fgenesh2_kg.5__443__AT3G26760.1 1749 0.0
> Ahg484451 jgi|Araly1|484451|fgenesh2_kg.5__443__AT3G26760.1
Length=1190
Score = 1749 bits (947), Expect = 0.0
Identities = 1051/1102 (95%), Gaps = 4/1102 (0%)
Strand=Plus/Plus
Query 2 AATTCACGTTCACATAGAAAAATTAACAAGAGGCAGAAGGaaaaaaaaTGTGGAGGTCAT 61
||||||||||||||||| |||||| ||||||||||| | ||||| |||| ||||||||
Sbjct 1 AATTCACGTTCACATAG--TAATTAAGAAGAGGCAGAA-GCAAAAATATGTTGAGGTCAT 57
Query 62 TCGCAAGAAGCTTCAAACTCATTAATGTACCAAATGGTTTGATATCCAAGCCAATTCGCT 121
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 58 TCGCAAGAAGCTTCAAACTCATTAATGTGCCAAATGGTTTGATATCCAAGCCAATTAGCT 117
Query 122 CTACTCTCCTCTATTCAACTTCTTCAAGAAAGTTAGAAGGAAAAGTAGCGGTCATAACCG 181
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CCACTCTCCTCTATTCAACTTCTTCAAGAAAGTTAGAAGGAAAAGTAGCGGTCATAACCG 177
Query 182 GCGGGGCAAGCGGAATAGGGAAGGCCACAGCGGAGGAATTTGTGAGCCAAGGTGCGCAAG 241
|||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 178 GCGGTGCAAGCGGCCTAGGGAAGGCCACTGCGGAGGAATTTGTGAGCCAAGGTGCGCAAG 237
Query 242 TGATTATCGTAGATATAGATGAAGAGGCTGGTCATATGGTCGCGACCGAACTTGGCTCAG 301
|| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 238 TGTTTATCGTAGATATAGATGAAGAGACTGGTCATAAGGTCGCGACCGAACTTGGCTCAG 297
Query 302 CCGCACATTTCTTAAGATGTGATGTCACTGAGGAGGAACAAATCGCTAAGGCCGTGGAGA 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CCGCACATTTCTTAAGATGTGATGTCACTGAGGAGGAACAAATCGCTAAGGCCGTGGAGA 357
Query 362 CCGCCGTGACTCGTCATGGGAAGCTCGACGTAATGCTCAATAGTGCGGGAATATCATGCT 421
||||||| |||||||||||||||| ||| |||||||||| ||||| |||||||||||||
Sbjct 358 CCGCCGTTTCTCGTCATGGGAAGCTTGACATAATGCTCAACAGTGCTGGAATATCATGCT 417
Query 422 CCATATCACCACCAAGCATAGCGGACCTAGACATGGACACTTACGACAAAGTGATGCGTC 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CCATATCACCACCAAGCATAGCGGACCTAGACATGGACACTTACGACAAAGTGATGCGTC 477
Query 482 TCAACGTGCGAGGTACTGTCTTAGGGATAAAGCACGCGGCTCGAGCCATGATCCCCGCTG 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 478 TCAACGTGCGAGGTACTGTCTTAGGGATAAAGCACGCGGCTCGAGCCATGATCCCCGCAG 537
Query 542 GCTCGGGCTCCATCCTCTGCCTCTCTAGCATCAGCGGCTTGATGGGTGGTCTAGGCCCAC 601
||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 538 GCTCGGGTTCCATCCTTTGCCTCTCTAGCATCAGCGGCTTGATGGGCGGTCTAGGCCCAC 597
Query 602 ACGCATACTCAATCTCTAAATTCACAATCCCGGGTGTGGTCAAGACGGTTGCGAGCGAGC 661
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 598 ACGCATACTCAATCTCTAAATTCACAATCCCGGGTGTGGTCAAGACGGTTGCTAGCGAGC 657
Query 662 TGTGTAAGCACGGACTAAGAATCAATTGTATATCGCCCGCAGGCATCCCGACGCCTCTAA 721
|||||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 658 TGTGTAAGCACGGATTGAGAATCAATTGTATATCACCCGCGGGCATCCCGACGCCTCTAA 717
Query 722 CTTTGAGGATGTTTCGAGAGGCGTTTGCGGGTCATAGCATTCGGGAGGAACAACTTTTGG 781
| ||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 718 CCCTGAGGATGTTTCGGGAGGCGTTTGCGGGTCATAACATTCCGGAGGAACAACTTTTGG 777
Query 782 CGATTGTGAACGCGACGGGAGAACTAAAGGGAGAGAAGTGTGAGGAGATAGATGTGGCTA 841
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 778 CGATTGTGAACGCGACGGGAGAGCTAAAGGGAGAGAAGTGTGAGGAGATAGATGTGGCTA 837
Query 842 AAGCGGCTTTGTATTTGGCATCGGATGATGCTAAGTTTGTGACGGGGCATAACCTTGTTG 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AAGCGGCTTTGTATTTGGCATCGGATGATGCTAAGTTTGTGACGGGGCATAACCTTGTTG 897
Query 902 TTGATGGTGGATTTACTTGTTTCAAGTCTCTTAATCTCCCTTCTGCTTAATTAATTTATC 961
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 898 TTGATGGTGGATTTACTTGTTTCAAGTCTCTGAATCTCCCTTCTGCTTAATTAATTAATC 957
Query 962 AAGTTAGTTAAAGttttttttttttttttAGTTTTCTGATGTGGTTATTACGAGTGTTTT 1021
|||||| |||||| |||||||| ||||||||| ||| |||||||||||| |||||||||
Sbjct 958 AAGTTAACTAAAGTCTTTTTTTTCTTTTTAGTTCTCTCATGTGGTTATTATGAGTGTTTT 1017
Query 1022 GGCCTTTTGGGTCATTGCTGATGTGATCGTTTGTAATCTATGGGACATTATATGGTTGGA 1081
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1018 GGCCTTTTGGGTCATTGTTGATGTGATCGTTTGTAATCTATGGGACACTATATGGTTGGA 1077
Query 1082 A-TTTGGAATTATAAATTTAGC 1102
| ||||||||||||||||||||
Sbjct 1078 ACTTTGGAATTATAAATTTAGC 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45861869151
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5