BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26770.1
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347039 jgi|Araly1|347039|fgenesh1_pg.C_scaffold_5000431 1120 0.0
> Ahg347039 jgi|Araly1|347039|fgenesh1_pg.C_scaffold_5000431
Length=789
Score = 1120 bits (606), Expect = 0.0
Identities = 677/712 (95%), Gaps = 2/712 (0%)
Strand=Plus/Plus
Query 309 GTGATCGCCGACTTAGACGCGGAAACCGGGACAAAAACCGCTAAAGAACTAGGCTCGGAG 368
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| | |
Sbjct 79 GTGATCGCCGACTTAGATGCGGAAACCGGGATTAAAACCGCTAAAGAACTAGGCTCAGCG 138
Query 369 GCAGAGTTTGTGCGGTGTGATGTCACGGTGGAGGCTGATATCGCTGGAGCCGTGGAAATG 428
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 139 GCAGAGTTTGTGCGGTGTGATGTCACGGTGGAGGCGGATATCGCTGGAGCCGTGGAAATG 198
Query 429 ACGGTGGAGCGGTATGGGAAGCTAGACGTGATGTACAATAACGCTGGGATTGTTGGACCT 488
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 199 ACGGTGGAGCGGTACGGGAAGCTAGACGTGATGTACAACAACGCTGGGATTGTGGGACCC 258
Query 489 ATGACTCCAGCGAGCATATCGCAGCTTGATATGACAGAATTCGAGAGAGTAATGAGGATT 548
|||||||| || ||||||||| ||||||||||||| || ||||||||||| |||||||||
Sbjct 259 ATGACTCCGGCCAGCATATCGGAGCTTGATATGACGGAGTTCGAGAGAGTGATGAGGATT 318
Query 549 AATGTTTTTGGTGTTGTCTCCGGCATCAAACACGCCGCTAAGTTTATGATTCCGGCTAGG 608
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 319 AATGTTTTTGGGGTTGTCTCCGGCATCAAACACGCCGCCAAGTTTATGATTCCGGCTAGG 378
Query 609 TCTGGATGCATTTTGTGCACATCAAGCGTTGCAGGCGTGACTGGAGGGTTGGCTCCACAT 668
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TCAGGATGCATTTTGTGCACATCAAGCGTTGCAGGCGTGACTGGAGGGTTGGCTCCACAT 438
Query 669 TCATACACAATCTCAAAGTTCACAACTCCCGGAATAGTCAAGTCGGCAGCAAGCGAGCTC 728
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 439 TCATATACAATCTCAAAGTTCACAATTCCCGGAATAGTCAAGTCGGCAGCAAGCGAGCTC 498
Query 729 TGCGAACACGGCGTGCGTATAAACTGTATCTCACCGGGTACGGTGGCTACACCGCTCACT 788
||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 499 TGCCAACACGGAGTGCGTATCAACTGTATCTCACCGGCTACGGTGGCTACACCGCTCACT 558
Query 789 CTCAGTTACCTTCAG-AAAGTGTTTCCGAAGGTATCGGAGGAGAAGCTACGCGAAACAGT 847
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 559 CTCCGTTACCTTC-GTAAAGTGTTCCCGAAGGTATCGGAGGAGAAGCTACGCGAAACAGT 617
Query 848 GAAAGGAATGGGTGAGTTAAAAGGAGCTGAGTGTGAAGAAGCTGACGTGGCTAAGGCTGC 907
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 618 GAAAGGAATGGGTGAGTTAAAAGGAGCTGAGTGTGAAGAAGCTGACGTTGCTAAAGCTGC 677
Query 908 TTTGTATTTGGCTTCCAACGACGGTAAATACGTTACTGGCCATAACTTGGTCGTGGATGG 967
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 678 TCTGTATTTGGCCTCCAACGACGGTAAATACGTTACTGGCCATAACTTGGTCGTGGACGG 737
Query 968 TGGCATGACTGCTTTCAAAATAGCTGGTTTTCCTTTTCCTTCGGATTCATGA 1019
||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 738 TGGCATGACTGCTTTCAAAATAGCTGGTTTTCCTTTTCCTTCGGAATCATGA 789
Score = 115 bits (62), Expect = 6e-25
Identities = 76/82 (93%), Gaps = 3/82 (4%)
Strand=Plus/Plus
Query 99 ATGGCGGCCATAGTACTGATCAGATCTATCGTCAGAAACTTTAAACGGCCAGCCACCGCA 158
||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCGGCC---GTACTGATCAGATCCGTCGTTAGAAACTTTAAACGGCCAGCCACCGCA 57
Query 159 GCCTCAGCCGCTTACTCGACAG 180
||||||||||||||||||||||
Sbjct 58 GCCTCAGCCGCTTACTCGACAG 79
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40524660771
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5