BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26780.1
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936390 jgi|Araly1|936390|scaffold_500581.1 1775 0.0
> Ahg936390 jgi|Araly1|936390|scaffold_500581.1
Length=1227
Score = 1775 bits (961), Expect = 0.0
Identities = 1155/1245 (93%), Gaps = 27/1245 (2%)
Strand=Plus/Plus
Query 103 CACTTTTCACAAAGAAGATGGGTTCTTCACAATCTA-CGCAAAT-Ggaagacgaagaaga 160
|||| || |||||||||||||||||||||||||| | || || | || |||||||| |
Sbjct 4 CACTATTGACAAAGAAGATGGGTTCTTCACAATC-AGCGGAAGTAGG-AGACGAAG--G- 58
Query 161 agaagaagaggaaactgacaatgaagaagaagaagaagaagaTAATGGCAGATCAAACAC 220
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TGAAGAAGAGGAAACTGACAATGAAGAAGAAGAAGAAGAAGATAATGGCAGATCAAACAC 118
Query 221 AAGACAATTAGACAATCTCCTAGTAAAGAAAGTTCTAGAACAAGAGCCTGAGATGTTACC 280
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AAGAGAATTAGGCAATCTCCTAGTAAAGAAAGTTCTAGAACAAGAGCCTGAGATGTTACC 178
Query 281 ATGTCACGCTTCAGCTTCACCACTCTCACCACAACTATCATCTCTCGGTACTCCAAGGCT 340
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 179 ATGTCACGCTTCAGCTTCACCACTCTCACCACAACTATCATCTCTCGGAACTCCACGGCT 238
Query 341 TGGACCATCGATTAAAGTCTGGGATCCTTACAACGTCCTCTCTCCGCCGCCGCAACCGCC 400
|||||||||||||||||||||||||||||| |||||||||||| ||| |||||
Sbjct 239 TGGACCATCGATTAAAGTCTGGGATCCTTATAACGTCCTCTCT------CCG---CCGCC 289
Query 401 GTCTATCTTCTCTCGAATCGTGTCTGGTGATGAAGATCGAGCTGTGACAGAGGTTTATCT 460
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 290 GTCTATCTTCTCTCGAATCGCGTCTGGTGATGAAGATCGAGCTGTGACGGAGGTTTATCT 349
Query 461 GATTAGCCATGGTGAGTCTGATCTTAATCTTAA-ACCTGATTTGATTGGTGGGAGATGTC 519
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 350 GATTAGCCATGGTGAGTGTGATCTTAATC-TAAGACCTGATTTGATTGGTGGGAGATGTC 408
Query 520 ATGTAGCTGCTCTTACTGCTAATGGTAAACGTCAAGCTAGGGCTCTTGCTGTTTTCTTCA 579
|||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |
Sbjct 409 ATGTAGCTGCGCTTACTGGTAATGGTAAACGTCAGGCTAGGGCTCTTGCTGTTTTCTTTA 468
Query 580 AATCTCAAGGTGTTCGGTTTAATTCGGTTTAT-TCGTCACCTCTAGATCGAGCTAGATCC 638
|||||||||||||||| || ||||| |||| | || || ||| | |||||||||||||||
Sbjct 469 AATCTCAAGGTGTTCGATTCAATTCTGTTT-TCTCTTCTCCTTTGGATCGAGCTAGATCC 527
Query 639 ATGGCTGTTTCT-GTTTGTCAGGAAATGAGTTTTCCGGAGGAGCATGTACAATCTTCGGA 697
|||||||||| | ||||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 528 ATGGCTGTTT-TGGTTTGTCAGGAAATGAGTTTTGCGGAGGAGCATGTACAATCGTCAGA 586
Query 698 TGCTGTTATTGAGATGAGTTTAGGGGATTGGGAAGGCTGTAATCAAGCAGAGATTTATAG 757
|||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 587 TGCTATTATTGAGATGAGTTTAGGGGATTGGGAAGGTTGCAATCAAGCAGAGATTTATAG 646
Query 758 TCCTGAAACTTTGAGTTTGATTGAAAGGTGCCAACCTGATTTCACAGCTCCATCTGGAGA 817
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 647 TCCCGAAACTTTGAGTTTGATTGAAAGATGCCAGCCTGATTTCACAGCTCCATCTGGAGA 706
Query 818 ATCACTGAGGCAAGTAGAGTTTCGAATGGTTCAGTTTCTAAACGGGACAGTCTCAGGAGT 877
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 707 ATCACTCAGGCAAGTAGAGTTTCGAATGGTTCAGTTTATAAACGGGACAGTCTCAGGACT 766
Query 878 TGCAGAGAAGCTTAGGTCAGATTATTCTTCCACTACGAATCACAATGAAACTCATGAGCG 937
|||||||||||| |||||||||||||| |||||| |||||||||||||||| ||||||||
Sbjct 767 TGCAGAGAAGCTCAGGTCAGATTATTCGTCCACTGCGAATCACAATGAAACCCATGAGCG 826
Query 938 TGATGGTGGTGT-GTCACTTGCTTCGACTAACTGGGACTTACTACACAAGCATCGTCCCA 996
|||||||||| | ||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 827 TGATGGTGGT-TCGTCACTTCCTTCGACTAACTGGGACTTACTTCACAAGCATCGTCCCA 885
Query 997 GTCTTACAAGGAAGAAATCTGGTAAAAGCAGGCTTCAAGTGATGACTAATCACGAACCTG 1056
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 886 GTCTTACAAGGAAGAAATCTGGTAAAAGCAGACTTCAAGTAATGACCAATCACGAACCTG 945
Query 1057 ACGATGGAAACTCCCCAAGGGAAGAAGTTAATCATAATCACACTGACCTAAGTGATTCGT 1116
| |||| || |||||||||||||| ||||||| ||||||| ||||||||||||||| |
Sbjct 946 AAGATG-AA--TCCCCAAGGGAAGATGTTAATCGCAATCACAATGACCTAAGTGATTCCT 1002
Query 1117 CTTCCTTAATCTCGAATTGTGTCGGGGTTTTCACGCATTCTTTGCCTATAAAGTGTCTTT 1176
|||| |||||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1003 CTTCGTTAATCACAAATTGCATCGGGGTTTTCACGCATTCTTTGCCTATAAAGTGTCTTC 1062
Query 1177 TAACCGGAATCCTCGGTTGCAGTCCGGTAATGACTCATAAGATCTGTGTAGAAGACTCTT 1236
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1063 TAACCGGAATCCTCGGTTGCAGTCCGGTAATGACTCATAAAATCTGTGTAGAAGACTCTT 1122
Query 1237 CAGTGACTGTGTTACAACATTCATGGAGAAACGGGTGGCAGATCAAACGAATGAATGATA 1296
|||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1123 CAGTGACTGTGTTACAGCATTCGTGGAGAAATGGGTGGCAGATCAAACGAATGAATGATA 1182
Query 1297 CTGCTCATCTTAGATTGTTGTAACTTTATTTACCGATAAATTATT 1341
|| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1183 CTACTCATCTTAGATTGTTGTAGCTTTATTTACCGATAAATTATT 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56678284560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5