BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26782.1 Length=2186 Score E Sequences producing significant alignments: (Bits) Value Ahg484454 jgi|Araly1|484454|fgenesh2_kg.5__446__AT3G26782.1 3066 0.0 > Ahg484454 jgi|Araly1|484454|fgenesh2_kg.5__446__AT3G26782.1 Length=1996 Score = 3066 bits (1660), Expect = 0.0 Identities = 1890/2002 (94%), Gaps = 12/2002 (1%) Strand=Plus/Plus Query 19 GAATGAATGAAGGTTCGGAGTAAAAAAGCACTGTTTTGTTCCGTCTCTCGTCTTCTCCAC 78 |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 GAATGAATGAAGGTTCCGAGTAAAAAAGCACTGTTCTGTTCCGTCTCTCGTCTTCTCCAC 60 Query 79 ACGGAGAGACACACAGAGAGACAAAACCTAACAACGCTGTTCAACAGATATGTCGACAAA 138 |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 61 ACGGAGAGACACACAGAGAGACAAAACCTAACGACTTTGTTCAACAGATATGTCGACAAA 120 Query 139 ACAGATGTTTTCTCATGGAACTCTGTCATCGCCGACCTCGCTCGTAGCGGTGATTCTGCT 198 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACAGATGTCTTCTCATGGAACTCTGTCATCGCCGACCTCGCTCGTAGCGGTGATTCTGCT 180 Query 199 GAAGCTCTTCTCGCTTTTTCCTCAATGCGGAAGCTTTCTCTATACCCAACTCGCTCTAGC 258 |||||||||| ||||||||||||||||| || || |||||||||||||||||||||||| Sbjct 181 GAAGCTCTTCGAGCTTTTTCCTCAATGCGAAAACTCTCTCTATACCCAACTCGCTCTAGC 240 Query 259 TTTCCTTGCGCCATTAAAGCATGTTCGTCTCTTTTTGATATCTTCTCCGGCAAACAGACC 318 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 241 TTTCCTTGCGCCATTAAAGCATGTTCGTCTCTTCTTGATATCTTCTCCGGAAAACAGACC 300 Query 319 CATCAGCAAGCTTTTGTCTTCGGTTATCAATCCGACATCTTTGTGTCTTCGGCTTTGATC 378 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 301 CATCAGCAAGCTTTTGTCTTCGGTTATCAATCTGACATCTTTGTGTCTTCGGCTTTGATC 360 Query 379 GTTATGTATTCAACTTGTGGGAAACTGGAGGATGCACGGAAAGTGTTCGACGAAATTCCC 438 ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||| Sbjct 361 GTTATGTATTCAACTTGTGGGCAACTTGAGGATGCACGGAAGGTGTTCGACGAAATTCCC 420 Query 439 AAGAGAAATATTGTATCTTGGACTTCGATGATTCGAGGGTATGATCTTAACGGTAATGCC 498 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 421 AAGAGAAATATTGTTTCTTGGACTTCGATGATTCGAGGGTATGATCTTAACGGTAACGCC 480 Query 499 CTTGATGCTGTTTCTCT-TTTCAAGGATCTATTGGTCGATGAAAATGATGATGACGATGC 557 ||||||||||||||||| ||| |||||| ||||| |||| |||||||||||||||| | | Sbjct 481 CTTGATGCTGTTTCTCTATTT-AAGGATTTATTGATCGAAGAAAATGATGATGACGCTAC 539 Query 558 AATGTTTCTTGATTCTATGGGTTTGGTTTCGGTAATCTCTGCTTGTTCTCGTGTTCCTGC 617 |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||| Sbjct 540 AATGTTTCTTGATTCTATGGGTATGGTTTCGGTAATCTCGGCTTGTTCTCGTGTTGCTGC 599 Query 618 TAAGGGTTTAACGGAATCTATTCATAGCTTTGTGATTAAGAGAGGTTTTGATAGAGGAGT 677 ||| |||||||| | ||| ||||||||||||||||| || ||||| |||||||||||||| Sbjct 600 TAAAGGTTTAACTGCATCAATTCATAGCTTTGTGATAAAAAGAGGGTTTGATAGAGGAGT 659 Query 678 GAGTGTTGGTAATACTCTTTTGGATGCTTATGCTAAGGGTGGAGAAGGAGGTGTTGCTGT 737 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 660 GAGTGTTGGTAATACTCTTTTGGATGCTTATGCTAAGGGCGGAGAAGGAGGTGTAGCTGT 719 Query 738 GGCGAGAAAAATCTTTGATCAGATTGTGGATAAGGATCGTGTTTCGTATAATTCGATTAT 797 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 GGCGAGAAAAATCTTTGATCAGATTGTGGATAAGGATCGTGTTTCGTATAATTCGATTAT 779 Query 798 GAGTGTGTATGCTCAGAGTGGGATGTCTAATGAGGCTTTTGAGGTTTTTCGTAGACTTG- 856 |||||| |||||||||| |||||||||||||||||||||||| ||||||||||||| || Sbjct 780 GAGTGTTTATGCTCAGAATGGGATGTCTAATGAGGCTTTTGATGTTTTTCGTAGAC-TGA 838 Query 857 TTAAGAATAAAGTTGTGACCTTTAACGCCATTACATTGTCTACTGTGTTGTTGGCGGTCT 916 ||||| | |||||||||||||||||| |||||||||||||||||||||||||||| || | Sbjct 839 TTAAGGAGAAAGTTGTGACCTTTAACTCCATTACATTGTCTACTGTGTTGTTGGCAGTTT 898 Query 917 CGCATTCAGGTGCTCTGCGTATTGGAAAGTGTATACATGATCAGGTAATAAGGATGGGTC 976 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 CGCATTCGGGTGCTCTCCGTATTGGAAAGTGTATACATGATCAGGTAATAAGGATGGGTC 958 Query 977 TTGAGGATGATGTGATAGTGGGGACGTCGATAATTGATATGTATTGCAAATGCGGAAGAG 1036 |||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||| Sbjct 959 TTGAGGATGACGTGATAGTTGGGACATCGATAATTGATATGTATTGCAAATGTGGAAGAG 1018 Query 1037 TTGAGACGGCGAGAAAAGCATTTGATCGAATGAAAAACAAGAATGTTAGGTCGTGGACCG 1096 | |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 TGGAGACGGCAAGATTAGCATTTGATCGAATGAAAAACAAGAATGTTAGGTCGTGGACCG 1078 Query 1097 CCATGATTGCTGGATATGGAATGCACGGCCACGCGGCTAAAGCGTTAGAGTTATTCCCTG 1156 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1079 CCATGATTGCTGGATATGGAATGCATGGCCATGCGGCTAAAGCGTTAGAGTTATTCCCTG 1138 Query 1157 CTATGATCGATTCAGGGGTTCGACCAAATTACATTACTTTTGTATCAGTGTTAGCTGCTT 1216 |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 1139 CTATGATCGATTCAGGGGTTAGACCAAATTACATTACTTTTGTATCGGTGTTAGCTGCTT 1198 Query 1217 GCAGTCATGCGGGTCTTCATG-TGGAAGGCTGGCGCTGGTTTAACGCAATGAAGGGGAGA 1275 ||||||| ||||||||||||| | | |||||||| |||||||||||| |||||||| ||| Sbjct 1199 GCAGTCACGCGGGTCTTCATGAT-GTAGGCTGGCACTGGTTTAACGCGATGAAGGGAAGA 1257 Query 1276 TTTGGTGTGGAACCAGGG-TTAGAACACTACGGTTGTATGGTTGATCTTCTAGGTAGAGC 1334 || || |||||||| ||| ||||||||||| |||||||||||||||||||||||| |||| Sbjct 1258 TTCGGCGTGGAACC-GGGTTTAGAACACTATGGTTGTATGGTTGATCTTCTAGGTCGAGC 1316 Query 1335 TGGGTTTCTTCAGAAAGCTTATGATTTGATTCAGAGAATGAAGATGAAGCCGGACTCTAT 1394 ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| Sbjct 1317 TGGGTTTCTTCAGAAAGCTTATGATTTGACTCAGAAAATGAAGATGGAGCCGGACTCTAT 1376 Query 1395 CATCTGGAGCTCACTTCTTGCAGCTTGTAGAATTCACAAGAACGTGGAGCTAGCTGAGAT 1454 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1377 CATCTGGAGCTCACTTCTTGCAGCTTGTAGAATTCACAAGAACGTGGAGCTCGCTGAGAT 1436 Query 1455 ATCCGTGGCGCGTTTGTTTGAATTGGACT-CTTCGAATTGCGGTTACTACATGCTGCTTT 1513 ||||||||| |||||||| |||||||| | ||||||| |||||||| ||||||||||||| Sbjct 1437 ATCCGTGGCACGTTTGTTCGAATTGGA-TCCTTCGAACTGCGGTTATTACATGCTGCTTT 1495 Query 1514 CGCATATCTACGCTGATGCGGGTCGTTGGAAAGATGTTGAGAGGGTGAGAATGATCATGA 1573 ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 1496 CGCATATTTACGCTGATGCGGGGCGTTGGAAAGATGTTGAGAGGGTGAGAATGATAATGA 1555 Query 1574 AGAATCGCGGATTGGTGAAACCGCCAGGTTTTAGTCTACTCGAGTTGAATGGTGAGGTTC 1633 ||||||| |||||||||||||| || |||||||| ||||| ||||| ||||||||||||| Sbjct 1556 AGAATCGTGGATTGGTGAAACCCCCGGGTTTTAGCCTACTTGAGTTAAATGGTGAGGTTC 1615 Query 1634 ATGTGTTCTTGATCGGAGACGAAGAGCATCCTCAGCGTGAGAAGATTTACGAGTTTTTAG 1693 ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||| Sbjct 1616 ATGTGTTCTTGATAGGAGACGAAGAGCATCCTCAACGCGAGAAGATTTACGAGTTTTTAG 1675 Query 1694 CAGAACTGAACAGGAAGCTGTTAGAGGCAGGTTACGTATCGAACACGTCATCTGTATGTC 1753 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1676 CAGAACTGAACCGGAAGCTGTTAGAGGCAGGTTACGTATCGAACACGTCATCTGTATGTC 1735 Query 1754 ATGATGTTGATGAGGAAGAGAAAGAGATGACACTGAGAGTTCACAGCGAGAAACTAGCGA 1813 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1736 ATGATGTTGATGAGGAAGAGAAAGAGATGACACTGAGAGTTCACAGCGAGAAACTAGCGA 1795 Query 1814 TTGCGTTTGGGATCATGAACACGGTTCCTGGCTCGACGGTTAATGTGGTCAAGAATCTGA 1873 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1796 TTGCGTTTGGGATCATGAACACGGTTCCTGGCTCGACGGTTAACGTGGTTAAGAATCTGA 1855 Query 1874 GAGTTTGCAGCGATTGTCACAATGTGATCAAGTTGATTTCAAAGATTGTTGATAGAGAGT 1933 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1856 GAGTTTGCAGCGATTGTCATAATGTGATCAAGTTGATTTCAAAGATTGTTGATAGAGAGT 1915 Query 1934 TTGTGGTTAGAGATGCGAAGAGGTTTCACCATTTCAAAGATGGTGGAT-GTTCCTGTGGA 1992 |||||||||||||| ||||| |||||||||||||||||||||| | | | || ||||| Sbjct 1916 TTGTGGTTAGAGATACGAAGCGGTTTCACCATTTCAAAGATGG-GTCTTGCTCTTGTGGC 1974 Query 1993 GATTACTGGTGATTAGATATTA 2014 ||||| |||||||| ||||||| Sbjct 1975 GATTATTGGTGATTCGATATTA 1996 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82274929200 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5