BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26782.1
Length=2186
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484454 jgi|Araly1|484454|fgenesh2_kg.5__446__AT3G26782.1 3066 0.0
> Ahg484454 jgi|Araly1|484454|fgenesh2_kg.5__446__AT3G26782.1
Length=1996
Score = 3066 bits (1660), Expect = 0.0
Identities = 1890/2002 (94%), Gaps = 12/2002 (1%)
Strand=Plus/Plus
Query 19 GAATGAATGAAGGTTCGGAGTAAAAAAGCACTGTTTTGTTCCGTCTCTCGTCTTCTCCAC 78
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 GAATGAATGAAGGTTCCGAGTAAAAAAGCACTGTTCTGTTCCGTCTCTCGTCTTCTCCAC 60
Query 79 ACGGAGAGACACACAGAGAGACAAAACCTAACAACGCTGTTCAACAGATATGTCGACAAA 138
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 61 ACGGAGAGACACACAGAGAGACAAAACCTAACGACTTTGTTCAACAGATATGTCGACAAA 120
Query 139 ACAGATGTTTTCTCATGGAACTCTGTCATCGCCGACCTCGCTCGTAGCGGTGATTCTGCT 198
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACAGATGTCTTCTCATGGAACTCTGTCATCGCCGACCTCGCTCGTAGCGGTGATTCTGCT 180
Query 199 GAAGCTCTTCTCGCTTTTTCCTCAATGCGGAAGCTTTCTCTATACCCAACTCGCTCTAGC 258
|||||||||| ||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 181 GAAGCTCTTCGAGCTTTTTCCTCAATGCGAAAACTCTCTCTATACCCAACTCGCTCTAGC 240
Query 259 TTTCCTTGCGCCATTAAAGCATGTTCGTCTCTTTTTGATATCTTCTCCGGCAAACAGACC 318
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 241 TTTCCTTGCGCCATTAAAGCATGTTCGTCTCTTCTTGATATCTTCTCCGGAAAACAGACC 300
Query 319 CATCAGCAAGCTTTTGTCTTCGGTTATCAATCCGACATCTTTGTGTCTTCGGCTTTGATC 378
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 CATCAGCAAGCTTTTGTCTTCGGTTATCAATCTGACATCTTTGTGTCTTCGGCTTTGATC 360
Query 379 GTTATGTATTCAACTTGTGGGAAACTGGAGGATGCACGGAAAGTGTTCGACGAAATTCCC 438
||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||
Sbjct 361 GTTATGTATTCAACTTGTGGGCAACTTGAGGATGCACGGAAGGTGTTCGACGAAATTCCC 420
Query 439 AAGAGAAATATTGTATCTTGGACTTCGATGATTCGAGGGTATGATCTTAACGGTAATGCC 498
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 AAGAGAAATATTGTTTCTTGGACTTCGATGATTCGAGGGTATGATCTTAACGGTAACGCC 480
Query 499 CTTGATGCTGTTTCTCT-TTTCAAGGATCTATTGGTCGATGAAAATGATGATGACGATGC 557
||||||||||||||||| ||| |||||| ||||| |||| |||||||||||||||| | |
Sbjct 481 CTTGATGCTGTTTCTCTATTT-AAGGATTTATTGATCGAAGAAAATGATGATGACGCTAC 539
Query 558 AATGTTTCTTGATTCTATGGGTTTGGTTTCGGTAATCTCTGCTTGTTCTCGTGTTCCTGC 617
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct 540 AATGTTTCTTGATTCTATGGGTATGGTTTCGGTAATCTCGGCTTGTTCTCGTGTTGCTGC 599
Query 618 TAAGGGTTTAACGGAATCTATTCATAGCTTTGTGATTAAGAGAGGTTTTGATAGAGGAGT 677
||| |||||||| | ||| ||||||||||||||||| || ||||| ||||||||||||||
Sbjct 600 TAAAGGTTTAACTGCATCAATTCATAGCTTTGTGATAAAAAGAGGGTTTGATAGAGGAGT 659
Query 678 GAGTGTTGGTAATACTCTTTTGGATGCTTATGCTAAGGGTGGAGAAGGAGGTGTTGCTGT 737
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 660 GAGTGTTGGTAATACTCTTTTGGATGCTTATGCTAAGGGCGGAGAAGGAGGTGTAGCTGT 719
Query 738 GGCGAGAAAAATCTTTGATCAGATTGTGGATAAGGATCGTGTTTCGTATAATTCGATTAT 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGCGAGAAAAATCTTTGATCAGATTGTGGATAAGGATCGTGTTTCGTATAATTCGATTAT 779
Query 798 GAGTGTGTATGCTCAGAGTGGGATGTCTAATGAGGCTTTTGAGGTTTTTCGTAGACTTG- 856
|||||| |||||||||| |||||||||||||||||||||||| ||||||||||||| ||
Sbjct 780 GAGTGTTTATGCTCAGAATGGGATGTCTAATGAGGCTTTTGATGTTTTTCGTAGAC-TGA 838
Query 857 TTAAGAATAAAGTTGTGACCTTTAACGCCATTACATTGTCTACTGTGTTGTTGGCGGTCT 916
||||| | |||||||||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 839 TTAAGGAGAAAGTTGTGACCTTTAACTCCATTACATTGTCTACTGTGTTGTTGGCAGTTT 898
Query 917 CGCATTCAGGTGCTCTGCGTATTGGAAAGTGTATACATGATCAGGTAATAAGGATGGGTC 976
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CGCATTCGGGTGCTCTCCGTATTGGAAAGTGTATACATGATCAGGTAATAAGGATGGGTC 958
Query 977 TTGAGGATGATGTGATAGTGGGGACGTCGATAATTGATATGTATTGCAAATGCGGAAGAG 1036
|||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 959 TTGAGGATGACGTGATAGTTGGGACATCGATAATTGATATGTATTGCAAATGTGGAAGAG 1018
Query 1037 TTGAGACGGCGAGAAAAGCATTTGATCGAATGAAAAACAAGAATGTTAGGTCGTGGACCG 1096
| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TGGAGACGGCAAGATTAGCATTTGATCGAATGAAAAACAAGAATGTTAGGTCGTGGACCG 1078
Query 1097 CCATGATTGCTGGATATGGAATGCACGGCCACGCGGCTAAAGCGTTAGAGTTATTCCCTG 1156
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1079 CCATGATTGCTGGATATGGAATGCATGGCCATGCGGCTAAAGCGTTAGAGTTATTCCCTG 1138
Query 1157 CTATGATCGATTCAGGGGTTCGACCAAATTACATTACTTTTGTATCAGTGTTAGCTGCTT 1216
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1139 CTATGATCGATTCAGGGGTTAGACCAAATTACATTACTTTTGTATCGGTGTTAGCTGCTT 1198
Query 1217 GCAGTCATGCGGGTCTTCATG-TGGAAGGCTGGCGCTGGTTTAACGCAATGAAGGGGAGA 1275
||||||| ||||||||||||| | | |||||||| |||||||||||| |||||||| |||
Sbjct 1199 GCAGTCACGCGGGTCTTCATGAT-GTAGGCTGGCACTGGTTTAACGCGATGAAGGGAAGA 1257
Query 1276 TTTGGTGTGGAACCAGGG-TTAGAACACTACGGTTGTATGGTTGATCTTCTAGGTAGAGC 1334
|| || |||||||| ||| ||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1258 TTCGGCGTGGAACC-GGGTTTAGAACACTATGGTTGTATGGTTGATCTTCTAGGTCGAGC 1316
Query 1335 TGGGTTTCTTCAGAAAGCTTATGATTTGATTCAGAGAATGAAGATGAAGCCGGACTCTAT 1394
||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||
Sbjct 1317 TGGGTTTCTTCAGAAAGCTTATGATTTGACTCAGAAAATGAAGATGGAGCCGGACTCTAT 1376
Query 1395 CATCTGGAGCTCACTTCTTGCAGCTTGTAGAATTCACAAGAACGTGGAGCTAGCTGAGAT 1454
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1377 CATCTGGAGCTCACTTCTTGCAGCTTGTAGAATTCACAAGAACGTGGAGCTCGCTGAGAT 1436
Query 1455 ATCCGTGGCGCGTTTGTTTGAATTGGACT-CTTCGAATTGCGGTTACTACATGCTGCTTT 1513
||||||||| |||||||| |||||||| | ||||||| |||||||| |||||||||||||
Sbjct 1437 ATCCGTGGCACGTTTGTTCGAATTGGA-TCCTTCGAACTGCGGTTATTACATGCTGCTTT 1495
Query 1514 CGCATATCTACGCTGATGCGGGTCGTTGGAAAGATGTTGAGAGGGTGAGAATGATCATGA 1573
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1496 CGCATATTTACGCTGATGCGGGGCGTTGGAAAGATGTTGAGAGGGTGAGAATGATAATGA 1555
Query 1574 AGAATCGCGGATTGGTGAAACCGCCAGGTTTTAGTCTACTCGAGTTGAATGGTGAGGTTC 1633
||||||| |||||||||||||| || |||||||| ||||| ||||| |||||||||||||
Sbjct 1556 AGAATCGTGGATTGGTGAAACCCCCGGGTTTTAGCCTACTTGAGTTAAATGGTGAGGTTC 1615
Query 1634 ATGTGTTCTTGATCGGAGACGAAGAGCATCCTCAGCGTGAGAAGATTTACGAGTTTTTAG 1693
||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1616 ATGTGTTCTTGATAGGAGACGAAGAGCATCCTCAACGCGAGAAGATTTACGAGTTTTTAG 1675
Query 1694 CAGAACTGAACAGGAAGCTGTTAGAGGCAGGTTACGTATCGAACACGTCATCTGTATGTC 1753
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 CAGAACTGAACCGGAAGCTGTTAGAGGCAGGTTACGTATCGAACACGTCATCTGTATGTC 1735
Query 1754 ATGATGTTGATGAGGAAGAGAAAGAGATGACACTGAGAGTTCACAGCGAGAAACTAGCGA 1813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 ATGATGTTGATGAGGAAGAGAAAGAGATGACACTGAGAGTTCACAGCGAGAAACTAGCGA 1795
Query 1814 TTGCGTTTGGGATCATGAACACGGTTCCTGGCTCGACGGTTAATGTGGTCAAGAATCTGA 1873
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1796 TTGCGTTTGGGATCATGAACACGGTTCCTGGCTCGACGGTTAACGTGGTTAAGAATCTGA 1855
Query 1874 GAGTTTGCAGCGATTGTCACAATGTGATCAAGTTGATTTCAAAGATTGTTGATAGAGAGT 1933
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 GAGTTTGCAGCGATTGTCATAATGTGATCAAGTTGATTTCAAAGATTGTTGATAGAGAGT 1915
Query 1934 TTGTGGTTAGAGATGCGAAGAGGTTTCACCATTTCAAAGATGGTGGAT-GTTCCTGTGGA 1992
|||||||||||||| ||||| |||||||||||||||||||||| | | | || |||||
Sbjct 1916 TTGTGGTTAGAGATACGAAGCGGTTTCACCATTTCAAAGATGG-GTCTTGCTCTTGTGGC 1974
Query 1993 GATTACTGGTGATTAGATATTA 2014
||||| |||||||| |||||||
Sbjct 1975 GATTATTGGTGATTCGATATTA 1996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82274929200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5