BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26790.1
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484455 jgi|Araly1|484455|fgenesh2_kg.5__447__AT3G26790.1 2026 0.0
> Ahg484455 jgi|Araly1|484455|fgenesh2_kg.5__447__AT3G26790.1
Length=1385
Score = 2026 bits (1097), Expect = 0.0
Identities = 1310/1405 (93%), Gaps = 46/1405 (3%)
Strand=Plus/Plus
Query 1 AATCTCTGATTGCCCAGCGTCCATTTTAAGCCTCTGTTTCGATCTGcacaacacacatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATCTCTGATTGCCCAGCGTCCATTTTAAGCCTCTGTTTCGATCTGCACAACACACATAC 60
Query 61 acacaacacaacacaaaccacaGtctctctttctctctctatctatcttctctttctctc 120
||||||||||||||||||||||| |||| ||||| ||| || |||| || ||||||
Sbjct 61 ACACAACACAACACAAACCACAG--TCTC--TCTCTATCT-TC--TCTT-TC--TCTCTC 110
Query 121 tctatctctatcACTGAAACCCAAAGAGATCCACCATTTGTTCTTTTTTCCTTCACACAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 111 TCTATCTCTATCACTGAAACCCAAAGAGATCCACCATTTGTTCTTTTTTCCTTCATACAG 170
Query 181 AGAACTGTTTTCTTCCACACTTCCTTTTTACTAGGCAGTGTTAACCAATTGAGAGAGAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 AGAACTGTTTTCTTCCACACTTCCTTTTTACTAGGCAGTGTTAACCAATTGAGAGAGAAA 230
Query 241 AATGATGGTTGATGAAAATGTGGAAACCAAGGCCTCTACTTTAGTGGCAA--G-TG-T-- 294
|||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 231 AATGATGGTTGATGAAAATGTGGAAACCAAGGCCTCTACTTTAGTGGCAAGTGTTGATCA 290
Query 295 TG---ATCATGGGTTTGGATCCGGGTCGGGTCATGATCATCATGGGTTATCGGCGTCTGT 351
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TGATCATCATGGGTTTGGATCCGGGTCGGGTCATGATCATCATGGGTTATCGGCGTCTGT 350
Query 352 GCCTCTTCTTGGTGTTAACTGGAAGAAGAGAAGGATGCCTAGACAGAGACGATCTTCTTC 411
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 351 GCCTCTGCTTGGTGTTAACTGGAAGAAGAGAAGGATGCCAAGACAGAGACGATCTTCTTC 410
Query 412 TTCCTTTAACCTTCTCTCTTTCCCTCCTCCTATGCCTCCTATTTCCCACGTGCCAACTCC 471
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 411 TTCCTTTAACCTTCTCTCTTTTCCTCCTCCTATGCCTCCTATTTCCCACGTGCAAACTCC 470
Query 472 TCTCCCCGCACGTAAAATTGACCCAAGAAAGCTAAGATTCCTCTTCCAAAAGGAACTCAA 531
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 471 TCTCCCCGCACGTAAAATTGACCCAACAAAGCTAAGATTCCTCTTCCAAAAGGAACTCAA 530
Query 532 GAACAGTGACGTCAGCTCTCTCCGACGTATGATACTCCCGAAGAAAGCCGCGGAGGCTCA 591
|||||||||||||||||| ||||| |||||||||||||| |||||||| || ||||||||
Sbjct 531 GAACAGTGACGTCAGCTCCCTCCGCCGTATGATACTCCCCAAGAAAGCGGCAGAGGCTCA 590
Query 592 CTTGCCGGCACTTGAATGCAAGGAAGGGATTCCTATAAGAATGGAAGATTTGGACGGTTT 651
|||||||||||| |||||||||||||||||||| |||||||||||||||||| | ||| |
Sbjct 591 CTTGCCGGCACTGGAATGCAAGGAAGGGATTCCAATAAGAATGGAAGATTTGAATGGTCT 650
Query 652 TCACGTTTGGACCTTCAAGTATAGGTACTGGCCAAACAACAATAGCAGAATGTACGTGCT 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TCACGTTTGGACCTTCAAGTATAGGTACTGGCCAAACAACAATAGCAGAATGTACGTGCT 710
Query 712 AGAAAACACAGGCGATTTTGTGAATGCTCATGGTCTGCAGCTAGGTGACTTCATCATGGT 771
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 711 AGAAAACACAGGCGATTTTGTGAACGCTCATGGTCTGCAGCTAGGTGACTTCATCATGGT 770
Query 772 TTACCAAGATCTCTACTCAAACAATTACGTTATACAAGCAAGAAAAGCATCGGAAGAAGA 831
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 771 TTACCAAGATCTCTACTCAAACAATTACGTTATACAAGCAAGAAAGGCATCAGAAGAAGA 830
Query 832 AGAAGTAGACGTAATCAATCTTGAAGAAGACGACGTTTACACAAACTTAACAAGGATCGA 891
|| | |||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 831 AG--G-AGACGTAACCAATGTTGAAGAAGACGACGTTTACACAAACTTAACAAGGATCGA 887
Query 892 AAACACTGTGGTTAACGATCTTCTCCTCCAAGATTTTAATCATCacaacaacaacaacaa 951
|||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 888 AAACACGGTCGTTAACGATCTTCTCCTCCAAGATTTTAATCATCACAACACCAACAACAA 947
Query 952 caacaacagcaacagcaacagcaacaaATGTTCTTACTATTATCC-AGTCATAGATGATG 1010
|||||||| ||||| | ||||||||||||||||||||||||||| | |||| || ||||
Sbjct 948 CAACAACAACAACA--A-CAGCAACAAATGTTCTTACTATTATCCCA-TCATCGACGATG 1003
Query 1011 TCACCACAAACACAGAGT-CTTTTGTCTACGACACGACGGCTCTTA-CCTCCAACGATAC 1068
|||| |||| ||| | || ||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 1004 TCACTACAACCACTG-GTTCTTTTGTCTACGACACGACGGCT-TTAACCTCCAACGACAC 1061
Query 1069 TCCTCTCGATTTTTTGGGTGGACATACGACGACTACTAATAATTATTACTCCAAGTTCGG 1128
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1062 TCCTCTCGATTTTTTGGGTGGACATACGACGACTACTAATAATTATTATTCCAAGTTTGG 1121
Query 1129 AACATTCGATGGTTTGGGCTCCGTTGAGAATATCTCTCTCGATGACTTCTACTAGATAAT 1188
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1122 AACATTCGATGGTTTGGGCTCCGTTGAGAATATATCTCTCGATGACTTCTACTAGATGAT 1181
Query 1189 CAATCGATGGGCTCATGGT-ATTCTTGATGGTGATCAGCtatttaatatccttataata- 1246
||||||||||||||||| | ||| || |||||||||| |||||| || |||||||||||
Sbjct 1182 CAATCGATGGGCTCATGATGATTGTTAATGGTGATCAACTATTTTATTTCCTTATAATAG 1241
Query 1247 -ta---tataagaattaaatgcaatttg-catatatattatCAAGTGTTGAATATAACAT 1301
|| |||||||||||| |||| |||| |||||||||||||||||||| | ||| ||||
Sbjct 1242 ATACCCTATAAGAATTAAGTGCA-TTTGGCATATATATTATCAAGTGTTCAGTATTACAT 1300
Query 1302 TACAGTTTATATGAAAATCATAGCTAGATGTGAGTCAT--GAAGGTGTGTTGTATT-TG- 1357
|||||||||||||||||| ||||||||||| ||||||| ||||||||||||| || ||
Sbjct 1301 TACAGTTTATATGAAAATTATAGCTAGATGGGAGTCATATGAAGGTGTGTTGTGTTGTGT 1360
Query 1358 ---ATGAATAAATGTTATTTAGTGT 1379
||||||||||||||||||||||
Sbjct 1361 TTGATGAATAAATGTTATTTAGTGT 1385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51656552535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5