BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26810.1
Length=2401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484456 jgi|Araly1|484456|fgenesh2_kg.5__448__AT3G26810.1 3446 0.0
Ahg920146 jgi|Araly1|920146|scaffold_101427.1 1410 0.0
> Ahg484456 jgi|Araly1|484456|fgenesh2_kg.5__448__AT3G26810.1
Length=2352
Score = 3446 bits (1866), Expect = 0.0
Identities = 2224/2389 (93%), Gaps = 56/2389 (2%)
Strand=Plus/Plus
Query 15 agagagagagagagagTTTTGTTCTTCTTCTTTCTGGTTCCTTTGCTTTGCTTTGGTTGC 74
||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| |
Sbjct 1 AGAGAGAGAGAGAGAGTTTTGTTCTTCTTCTTTCTGG-TCTTTTGCTTTGCTTCGGTTAC 59
Query 75 GTGatctcctctctcatcaatcttct--tcatcatcattctcatcatcatTAGCTTCTTG 132
|||| | |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 60 GTGA--T-CTCTCTCATCAATCTTCTGAAAATCATCATTCTCATCATCATTAGCTTCTTG 116
Query 133 AtttttttttccttctttttttCGTTTCAAGAAACTAAACAAAGTTTCTATTTATGGTTT 192
| ||||| |||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 117 A----TTTTT--TTCTTTTTTT-GTTTCAAGAAACTAAGCAAAGTTTCTATTTATGGTTT 169
Query 193 TCTGATTCTTCTTCTACAGATCTATTATTTGATTCTCCTTCGATCATTGTCAACGTTTTC 252
||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 170 TCTGATT-TTCTTTTACAGATCTATTATTTGATTCT-CTTTGATCATTGTCAACGTTTTC 227
Query 253 TTCTTTTG---TAATCATCACAGttttttttgagaatttgttcatttttttttCTCATAT 309
|||||||| |||||||||||| || |||||||||| ||||||||||||||| ||
Sbjct 228 TTCTTTTGTATTAATCATCACAG---TTCTTGAGAATTTCTTCATTTTTTTTTCT--TAA 282
Query 310 ATTGATTCGAGTTCTTTCTTCTTGAATCTTGTTCTTCATAGATCTAGtttttgttttttA 369
| |||||||||||| |||||||| | |||||||||| ||||||||||| |||| ||||||
Sbjct 283 ACTGATTCGAGTTCCTTCTTCTTCAGTCTTGTTCTTGATAGATCTAGTATTTG-TTTTTA 341
Query 370 CTCTCTAGATCTATAGATCTGTTGAATTCACTTCTTTAA-TCCATCTCTGTGTTCTTGAG 428
||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 342 CTCTCCAGATCTATAGATCTGTTGAATTCACTTCTTTAAGT-CATCTCTGTGTTCTTGAG 400
Query 429 TTCCTATGGTCTAAGTCAAACTCAAGTTCAAGATCTGTTGAATTTGGAATCTTGCTGGTG 488
||||||| |||||||||||||||||||||||||||| |||| || ||||||||||| ||
Sbjct 401 CTCCTATGTTCTAAGTCAAACTCAAGTTCAAGATCTGGTGAA-TT-GAATCTTGCTGCTG 458
Query 489 AAGTTAGAGATGAATTATTTCCCAGATGAAGTAATAGAGCATGTATTCGACTTTGTAACA 548
||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 459 AAGTTAGAGATGAATTATTTCCCAGATGAAGTAATAGAGCACGTATTCGACTTCGTTACA 518
Query 549 TCTCACAAAGACAGGAATGCTATATCTCTTGTATGCAAATCATGGTACAAGATTGAAAGA 608
|| ||||||||||||||||||||||||||||||||||||||||||| |||||| || |||
Sbjct 519 TCCCACAAAGACAGGAATGCTATATCTCTTGTATGCAAATCATGGTTCAAGATCGAGAGA 578
Query 609 TACAGTAGGCAAAAGGTTTTCATTGGAAACTGTTATGCCATTAATCCAGAGAGGTTGCTT 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 TACAGTAGGCAAAAGGTTTTCATTGGAAACTGTTATGCCATTAATCCAGAGAGGTTGCTT 638
Query 669 CGGAGATTCCCATGTCTAAAGTCTTTGACTTTGAAAGGAAAACCTCATTTTGCGGATTTC 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 CGGAGATTCCCATGTCTAAAGTCTTTGACTTTGAAAGGAAAACCTCATTTTGCGGATTTC 698
Query 729 AATTTGGTTCCTCATGAATGGGGAGGTTTTGTGCTACCTTGGATTGAGGCTTTGGCTAGA 788
|||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct 699 AATTTGGTTCCTCATGAATGGGGAGGTTTTTTGCTACCTTGGATTGAAGCTTTAGCTAGA 758
Query 789 AGCCGTGTAGGACTTGAAGAGCTTAGGTTGAAGAGGATGGTTGTTACTGATGAGAGTCTT 848
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 AGTCGTGTAGGACTTGAGGAGCTTAGGTTGAAGAGGATGGTTGTTACTGATGAGAGTCTT 818
Query 849 GAGCTGCTTTCTCGTTCTTTTGTCAATTTTAAGTCTTTGGTCCTTGTTAGCTGTGAAGGT 908
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 819 GAGCTGCTTTCTCGTTCTTTTGTGAATTTTAAGTCTTTGGTGCTTGTTAGCTGTGAAGGT 878
Query 909 TTTACCACTGATGGTCTTGCCTCTATTGCCGCTAATTGCAGGCATCTTCGGGATCTTGAT 968
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 879 TTTACTACTGATGGTCTTGCCTCTATTGCCGCTAATTGCAGGCATCTTCGAGATCTTGAC 938
Query 969 TTGCAAGAGAATGAAATCGATGATCATAGAGGTCAATGGTTAAGTTGTTTCCCAGACACT 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 939 TTGCAAGAGAATGAAATCGATGATCATAGAGGTCAATGGTTAAGTTGTTTCCCCGACACT 998
Query 1029 TGCACGACTCTTGTCACGCTAAACTTTGCGTGCCTCGAAGGAGAAACTAATCTGGTTGCT 1088
|| ||||| ||||||||||| ||||||||||| || ||||||||||| ||||||||||||
Sbjct 999 TGTACGACCCTTGTCACGCTTAACTTTGCGTGTCTTGAAGGAGAAACAAATCTGGTTGCT 1058
Query 1089 CTAGAGAGGCTTGTTGCTAGGTCTCCAAACCTAAAGAGTCTGAAGCTAAATCGTGCAGTA 1148
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1059 CTAGAGAGGCTTGTTGCTAGGTCTCCAAACCTAAAGAGTCTGAAGCTAAACCGTGCAGTG 1118
Query 1149 CCGTTAGATGCACTCGCAAGGTTAATGGCGTGTGCGCCGCAGATAGTTGACTTAGGAGTA 1208
||| |||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1119 CCGCTAGATGCACTGGCAAGGTTAATGGTGTGTGCGCCGCAGATAGTTGATTTAGGAGTA 1178
Query 1209 GGGTCTTATGAGAATGACCCAGATTCCGAGTCTTACTTGAAACTCATGGCTG-TCATAAA 1267
|||||||||||||||||||||||||| ||||||||| ||||||||| ||||| | |||||
Sbjct 1179 GGGTCTTATGAGAATGACCCAGATTCAGAGTCTTACCTGAAACTCAAGGCTGCT-ATAAA 1237
Query 1268 GAAATGCACCTCGTTGAGGAGTTTGTCGGGTTTTCTAGAGGCTGCTCCTCACTGTCTCTC 1327
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1238 GAAATGCACCTCGTTAAGGAGTTTGTCGGGTTTTCTAGAAGCTGCGCCTCACTGTCTCTC 1297
Query 1328 AGCTTTCCACCCAATATGTCATAACCTCACCTCCTTGAATCTTAGTTACGCAGCTGAGAT 1387
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1298 AGCTTTCCACCCAATATGTCATAACCTTACCTCCTTGAATCTTAGTTATGCAGCTGAGAT 1357
Query 1388 TCATGGTAGCCACCTTATTAAGCTTATTCAGCATTGCAAGAAACTTCAGCGGTTATGGAT 1447
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 TCATGGCAGCCACCTCATTAAGCTTATTCAGCATTGCAAGAAACTTCAGCGGTTATGGAT 1417
Query 1448 TTTGGATAGTATAGGTGACAAAGGGCTTGAAGTTGTAGCTTCTACATGTAAAGAGTTACA 1507
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 ATTGGATAGTATAGGTGACAAAGGGCTTGAAGTTGTAGCTTCTACATGTAAAGAGTTACA 1477
Query 1508 AGAGCTTAGGGTTTTTCCATCTGATTTACTCGGTGGAGGCAACACAGCTGTGACCGAAGA 1567
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1478 AGAGCTTAGAGTTTTTCCATCTGATTTACTTGGTGGAGGCAACACAGCTGTGACCGAAGA 1537
Query 1568 AGGTCTAGTTGCCATCTCGGCAGGCTGCCCTAAGCTCCACTCTATACTCTACTTCTGCCA 1627
|||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||
Sbjct 1538 AGGTCTAGTTGCCATCTCCGCGGGCTGCCCTAAGCTTCACTCGATACTCTACTTCTGCCA 1597
Query 1628 ACAAATGACAAACGCAGCTCTCGTAACCGTTGCCAAGAACTGTCCAAATTTCATCCG-TT 1686
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1598 GCAGATGACAAACGCAGCTCTCGTAACCGTTGCCAAGAACTGTCCAAATTTCATCCGGTT 1657
Query 1687 TCCGACTCTGCATCCTCGAGCCAAACAAACCCGATCACGTCACATCTCAACCTCTAGACG 1746
| ||||||||||||| || |||| ||||||||||||||| |||||||||||| ||||||
Sbjct 1658 TA-GACTCTGCATCCTGGATCCAACCAAACCCGATCACGTGACATCTCAACCTTTAGACG 1716
Query 1747 AAGGCTTTGGAGCAATCGTCAAAGCCTGCAAGAGCCTGAGAAGGCTTTCTCTCTCAGGTC 1806
|||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||||
Sbjct 1717 AAGGATTTGGAGCAATCGTCAAAGCCTGCAAGAGCCTGAGACGGCTATCCCTCTCAGGTC 1776
Query 1807 TCCTTACAGACCAAGTCTTCCTCTACATCGGAATGTACGCGAATCAGCTCGAGATGCTCT 1866
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1777 TCCTCACAGACCAAGTCTTCCTCTACATCGGGATGTACGCGAATCAGCTCGAGATGCTCT 1836
Query 1867 CCATAGCCTTT-GCAGGAGATACAGACAAAGGCATGCTATATGTGTTGAATGGTTGCAAA 1925
| ||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1837 CAATAGC-TTTCGCAGGGGATACAGACAAAGGCATGCTTTATGTGTTGAATGGTTGCAAA 1895
Query 1926 AAGATGAAGAAA-CTAGAGATAAGGGATAGTCCGTTTGGGGACACGGCGCTTCTTGCTGA 1984
|||||||| ||| |||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1896 AAGATGAA-AAAGCTAGAGATTCGGGATAGTCCGTTTGGCGACACGGCGCTTCTTGCTGA 1954
Query 1985 TGTGAGCAAGTATGAAACAATGCGATCCCTTTGGATGTCTTCATGTGAAGTCACACTCAG 2044
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1955 TGTGAGCAAGTACAAAACAATGCGATCCCTTTGGATGTCGTCATGTGAAGTCACACTCAG 2014
Query 2045 TGGATGCAAAAGGCTCGCAGAGAAAGCGCCATGGCTCAATGTAGAGATCATAAACGAGAA 2104
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2015 CGGATGCAAAAGGCTCGCACAGAAAGCGCCATGGCTCAATGTAGAGATCATAAACGAGAA 2074
Query 2105 TGATAATAACCGGATGGAAGAAAACGGACACGAGGGGAGGCAGAAAGTGGATAAGTTGTA 2164
|||||||||||||||||| |||||||||||||| || || |||||||| ||||| |||||
Sbjct 2075 TGATAATAACCGGATGGAGGAAAACGGACACGAAGGAAGACAGAAAGTTGATAAATTGTA 2134
Query 2165 TCTGTACCGGACTGTGGTTGGGACAAGAATGGATGCGCCGCCATTTGTGTGGATTCTCTA 2224
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2135 TCTCTATCGCACTGTGGTTGGGACAAGAATGGATGCGCCGCCATTTGTGTGGATTCTCTA 2194
Query 2225 AGTCCTTTTCAGACCAAACTG-G-TTCTGATTGGTCGTCTTCCGTTAGTGTGTCTTTCCC 2282
||||||||||||||||| | | ||||||| ||| | | |||||||| |||||
Sbjct 2195 -GTCCTTTTCAGACCAAAATATGATTCTGATAGGT--T-T------AGTGTGTCCTTCCC 2244
Query 2283 GAA-TTAGGTGTAC-TTTTTGTTTT-----CTTTAAATTAAGACAAGAACTGATTCTTCT 2335
|| ||||||||| ||||| |||| ||||||||||||||||||||||||||||||
Sbjct 2245 -AAGTTAGGTGTATGTTTTTTTTTTTTTTTCTTTAAATTAAGACAAGAACTGATTCTTCT 2303
Query 2336 GTGAAAGCCATTCTgtttttgtttttgactttcctccgttgatttattg 2384
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2304 GTGAAAGCCATTCTGTTTTTGTTTTTGACTTTCCTCCGTTGATTTATTG 2352
> Ahg920146 jgi|Araly1|920146|scaffold_101427.1
Length=1774
Score = 1410 bits (763), Expect = 0.0
Identities = 1442/1766 (82%), Gaps = 61/1766 (3%)
Strand=Plus/Plus
Query 496 AGATGAATTATTTCCCAGATGAAGTAATAGAGCATGTATTCGACTTTGTAACATCTCACA 555
||||||||||||||||||| || || |||||||| || || ||||| ||| | |||||||
Sbjct 19 AGATGAATTATTTCCCAGACGAGGTTATAGAGCACGTGTTTGACTTCGTAGCTTCTCACA 78
Query 556 AAGACAGGAA-TGCTATATCTCTTGTATGCAAATCATGGTACAAGATTGAAAGATACAGT 614
|||||||||| | | || ||||| || |||||||||||| ||||||| || || | |||
Sbjct 79 AAGACAGGAACT-CGATCTCTCTGGTCTGCAAATCATGGCACAAGATCGAGAGGTTTAGT 137
Query 615 AGGCAA-AAGGTTTTCATTGGAAACTGTTATGCCATTAATCCAGAGAGGTTGCTTC-GGA 672
||| || || || ||||| |||||||| || ||||| ||||||||||| || || |||
Sbjct 138 AGG-AAGAACGTGTTCATCGGAAACTGCTACGCCATCAATCCAGAGAGATT-AATCGGGA 195
Query 673 GATTCCCATGTCT-AAAGTCTTTGACT-TTGAAAGGAAAACCTCATTTTGCGGATTTCAA 730
| || |||||||| ||| || || ||| || ||||| || |||||||| || ||||||||
Sbjct 196 GGTTTCCATGTCTCAAA-TCCTTAACTCTT-AAAGGGAAGCCTCATTTCGCTGATTTCAA 253
Query 731 TTTGGTTCCTCATGAATGGGGAGGTTTTGTGCTACCTTGGATTGAGGCTTTGGCTAGAAG 790
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||
Sbjct 254 CTTGGTTCCTCATGAATGGGGAGGTTTCGTGCTTCCTTGGATTGAAGCTTTGGCTAGGAG 313
Query 791 CCGTGTAGGACTTGAAGAGCTTAGGTTGAAGAGGATGGTTGTTACTGATGAGAGTCTT-G 849
||||||||| ||||| ||||| ||||||||| | ||||| || || ||||| || ||| |
Sbjct 314 CCGTGTAGGGCTTGAGGAGCTGAGGTTGAAGCGAATGGTGGTAACAGATGAAAG-CTTGG 372
Query 850 AGCTGCTTTCTCGTTCTTTTGTC-AATTTTAAGTCTTTGGTCCTTGTTAGCTGTGAAGGT 908
|||| ||||| |||||||||| | ||||| ||||||||||| ||||| |||||||||||
Sbjct 373 AGCTTCTTTCACGTTCTTTTG-CAAATTTCAAGTCTTTGGTTCTTGTCAGCTGTGAAGGA 431
Query 909 TTTACCACTGATGGTCTT-GCCTCTATTGCCGCTAATTGCAGGCATCTTCGGGATCTTGA 967
||||||||||| || ||| || || ||||| ||||||||||||||||||| || || ||
Sbjct 432 TTTACCACTGACGG-CTTAGCTTCCATTGCTACTAATTGCAGGCATCTTCGTGAGCTGGA 490
Query 968 TTTGCAAGAGAATGAAATCGATGATCATAGAGGTCAATGG-TTAAGTTGTTTCCCAGACA 1026
| |||||||||||||||| ||||||||||||||||||||| | || ||||| ||||| |
Sbjct 491 TCTGCAAGAGAATGAAATTGATGATCATAGAGGTCAATGGCTGAA-CTGTTTTCCAGATA 549
Query 1027 -CTTGCACGACTCTTGTCACGCTAAACTTT-GCGTGCCTCGAAGGAGAAACTAATCTGGT 1084
| ||||| |||||| || || | || ||| || || || ||||||| || ||| | |
Sbjct 550 GC-TGCACTACTCTTATCTCGTTGAA-TTTCGCCTGTCTTAAAGGAGAGACCAATGTTGC 607
Query 1085 TGCTCTAGAGAGGCTTGTTGCTAGGTCTCCAAACCTAAAGAGTC-TGAAGCTAAATCGTG 1143
|||| |||||||||||||||| ||||| || || || ||||| | ||||| |||| ||||
Sbjct 608 TGCTTTAGAGAGGCTTGTTGCAAGGTCACCGAATCTGAAGAG-CTTGAAGTTAAACCGTG 666
Query 1144 CAGTACCG-TTAGATGCACTCGCAAGGTTAATGGCG-TGTGCGCCGCAGATAGTTGACTT 1201
|||||||| || || ||||| || |||||||| | | |||||||||||| |||| |||||
Sbjct 667 CAGTACCGCTT-GACGCACTTGCTAGGTTAAT-GAGTTGTGCGCCGCAGTTAGTGGACTT 724
Query 1202 AGGAGTAGGGTCTTATGAGAATGACCCAGATTCC-GAGTCTTACTTG--AAACTCATGGC 1258
|||||||||||||||||||||||| |||||| || || |||| ||| ||||||||| |
Sbjct 725 AGGAGTAGGGTCTTATGAGAATGAGCCAGAT-CCAGAATCTT--TTGCGAAACTCATGAC 781
Query 1259 TGTCATA-AAGAAATGCACCTCGTTGAGGAGTTTGTCGGG-TTTTCTAGAGGCTGCTCCT 1316
|| ||| || ||||||| ||||| ||||| ||||| || |||| |||||| ||||||
Sbjct 782 TGCCATTGAA-AAATGCATATCGTTAAGGAGCTTGTCAGGCTTTT-TAGAGGTTGCTCCA 839
Query 1317 CACTGTCTCTCAGCTTTCCACCCAATATGTCATAACCTCACCTCCTTGAATCTTAGTTAC 1376
| ||| ||| |||| ||| |||| || ||||| ||||| | ||| ||||| || || ||
Sbjct 840 CTCTGCCTCCCAGCGTTCTACCCGATTTGTCAAAACCTTATCTCGTTGAACCTCAGCTAT 899
Query 1377 GCAGCTGAGATTCATGGTAGCCACCTTATTAAGCTTATTCAGCATTGCAAGAAACTTCAG 1436
||||| ||||| || || | |||||| |||||||||||||||| |||||||| ||||||
Sbjct 900 GCAGCCGAGATCCAAGGCAACCACCTCATTAAGCTTATTCAGCTTTGCAAGAGACTTCAA 959
Query 1437 CGGTTATGGATTTTGGATAGTATAGGTGACAAAGGGCTTGAAGTTGTAGCTT-CTACATG 1495
||||| ||||| ||||||||||| ||||||||||| |||| || || ||| | |||||
Sbjct 960 CGGTTGTGGATATTGGATAGTATTGGTGACAAAGGACTTGTGGTCGTCGCTGAC-ACATG 1018
Query 1496 TAAAGAGTTACAAGAGCTTAGGGTTTTTCCATCTGATTTAC-TCGGTGGAG--GC-AACA 1551
||||||||||||||||| || |||||||| || ||| ||| | |||| || | ||||
Sbjct 1019 CAAAGAGTTACAAGAGCTGAGAGTTTTTCCCTCCGATGTACAT-GGTGAAGAAGATAACA 1077
Query 1552 ---CAGCTGTGACCGAAGAAGGTCTAGTTGCCATCTCGGCAGGCTGCCCTAAGCTCCACT 1608
|||||||||| || | ||||||||||| || || ||||| |||||||| || || |
Sbjct 1078 TTGCAGCTGTGACTGAGGTCGGTCTAGTTGCAATTTCTGCAGGTTGCCCTAAACTTCATT 1137
Query 1609 CTATACTCTACTTCTGCCAACAAATGACAAACGCAGCTCTCGTAACCGTTGCCAAGAACT 1668
| || || ||||||||| ||||||||||||| ||||| ||| || |||| ||||| ||||
Sbjct 1138 CGATTCTATACTTCTGCAAACAAATGACAAATGCAGCGCTCATAGCCGTGGCCAAAAACT 1197
Query 1669 GTCCAAATTTCATCCGTTTCCGACTCTGCATCCTCGAGCCAAACAAACCCGATCACGTCA 1728
| ||||| |||||||| ||| | || ||||| ||||||||| ||||||| || ||| |||
Sbjct 1198 GCCCAAACTTCATCCGGTTCAGGCTATGCATTCTCGAGCCACACAAACCTGACCACATCA 1257
Query 1729 CATCTCAACCTCTAGACGAAGGCTTTGGAGCAATCGT-CAAAGCCTGCAAGAGCCTGAGA 1787
|||||||| | ||||||||||||||||| || ||||| ||| || |||||| | || |||
Sbjct 1258 CATCTCAATCACTAGACGAAGGCTTTGGTGCGATCGTACAA-GCTTGCAAGGGTCTAAGA 1316
Query 1788 AGGCTTTCTCTCTCAGGTCTCCTTA-CAGACCAAGTCTTCCTCTACATCGGAATGTACGC 1846
| || ||| |||| |||||| ||| | ||||||||||| || |||||||| ||||||||
Sbjct 1317 CGACTCTCTGTCTCCGGTCTC-TTAACCGACCAAGTCTTTCTTTACATCGGTATGTACGC 1375
Query 1847 GAATCAGCTCGAGATGCTCTCCATAGCCTTTGCAGGAGATACAGACAAAGGCATGCTATA 1906
| | |||||||||||||| || ||||| ||||| || || || |||||||| ||||| ||
Sbjct 1376 GGAGCAGCTCGAGATGCTTTCAATAGCTTTTGCGGGGGACACTGACAAAGGAATGCTCTA 1435
Query 1907 TGTGTTGAATGGTTGCAAAAAGATGAAGAAACTAGAGATAAGGGATAGTCCGTTTGGGGA 1966
|||||||||||| |||||||| |||| ||| || ||||||||||| ||||| |||||| |
Sbjct 1436 TGTGTTGAATGGATGCAAAAAAATGAGGAAGCTGGAGATAAGGGACAGTCCTTTTGGGAA 1495
Query 1967 CACGGCGCTTCTTGCTGATGTGAGCAAGTATGAAACAATGCGATCCCTTTGGATGTCTTC 2026
| | |||||||||||||| ||| | | ||| || ||||||||||||||||||||||| ||
Sbjct 1496 CGCTGCGCTTCTTGCTGACGTGGGTAGGTACGAGACAATGCGATCCCTTTGGATGTCGTC 1555
Query 2027 ATGTGAAGTCACACTCAGTGGATGCAAAAGGCTCGCAG-AGAAAGCGCCATGGCTCAATG 2085
|||||||| |||||| |||| ||||| |||||||| | |||| ||||| ||||||| |
Sbjct 1556 TTGTGAAGTAACACTCGGTGGCTGCAAGAGGCTCGC-GCAGAATTCGCCACGGCTCAACG 1614
Query 2086 TAGAGATCATAAACGAGAATGATAATAACCGGATGGAAGAAAACGGACACGAGGGGAG-G 2144
|||||||||| ||||||||||| ||||| ||||||||| | || | | | || | || |
Sbjct 1615 TAGAGATCATCAACGAGAATGAGAATAATCGGATGGAACAGAATGAAGAAGACGAAAGAG 1674
Query 2145 CAGAAAGTGGATAAG-TTGTATCTGTACCGGACTGTGGTTGGGACAAGAATGGATGCGCC 2203
|||| || ||||| || || || ||||| || ||||||||||| |||| ||||| ||
Sbjct 1675 -AGAAGGTTGATAAACTT-TACCTCTACCGAACAGTGGTTGGGACTAGAAAAGATGCACC 1732
Query 2204 GCCATTTGTGT-GGATTCTCTAAGTC 2228
|||| ||| | ||||||| || |||
Sbjct 1733 ACCATATGT-TAGGATTCTTTA-GTC 1756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90464331875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5