BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26820.1
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347046 jgi|Araly1|347046|fgenesh1_pg.C_scaffold_5000438 1537 0.0
Ahg484460 jgi|Araly1|484460|fgenesh2_kg.5__452__AT3G26840.1 1229 0.0
Ahg493863 jgi|Araly1|493863|fgenesh2_kg.7__3296__AT5G41120.1 344 1e-93
Ahg896560 jgi|Araly1|896560|Al_scaffold_0005_526 252 8e-66
> Ahg347046 jgi|Araly1|347046|fgenesh1_pg.C_scaffold_5000438
Length=2109
Score = 1537 bits (832), Expect = 0.0
Identities = 951/1010 (94%), Gaps = 2/1010 (0%)
Strand=Plus/Plus
Query 177 GGAAGCGAGAGATTTCGTTGGGGATGGAGGAGGTCCACCTCGTTGGTTCTCTCCGTTGGA 236
||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||
Sbjct 285 GGAAGCGAGAGATTTCGTTAGAGATGGAGGTGGTCCACCTCGTTGGTTCTCTCCGTTGGA 344
Query 237 ATGCAGAGCTCAAGCGCCAA-ACTCTCCTCTCCTCCTCTTTTTACCTGGGATCGATGGTA 295
|||||| |||||||| ||| ||||||||||||||| |||||||| ||||||||||| |
Sbjct 345 ATGCAGGGCTCAAGC-TCAAGGCTCTCCTCTCCTCCTATTTTTACCAGGGATCGATGGAA 403
Query 296 CTGGACTAGGTCTCATTCGTCATCACAAGAAACTTGGGGAGATTTTTGATATATGGTGCC 355
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 404 CTGGACTAGGTCTCATTCGCCATCACAAGAAACTTGGGGAGATTTTTGATATATGGTGCC 463
Query 356 TTCACATTCCCGTCAGTGATCGTACTCCATTTAAAGACTTGGTGAAGCTTATTGAGAGGA 415
|||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 464 TTCACATTCCAGTCAGTGACCGTACTCCATTTAAAGACTTAGTGAAGCTTATTGAGAGGA 523
Query 416 CAGTTAAGTCGGAGAACTACCGTTTCCCAAATAGACCAATATATTTAGTTGGAGAATCTA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 CAGTTAAGTCGGAGAACTACCGTTTCCCAAATAGACCAATATATTTAGTTGGAGAATCTA 583
Query 476 TTGGAGCATGTCTTGCGTTAGATGTTGCAGCCAGGAATCCCAACGTTGATCTTGCTCTGA 535
|||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct 584 TTGGAGCATGTCTTGCGTTAGATGTTGCAGCCAGGAATCCCAACATCGATCTTTCTCTGA 643
Query 536 TCTTGGTTAATCCAGCCACACATGTCAACAACTTCATGTCAAAACCTCTATTAGGAATGC 595
||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||
Sbjct 644 TCTTGGTTAATCCAGCCACACATGTCAACAACTTCATATCACAACCTCTATCAGGAATGC 703
Query 596 TTAATGTTTTACCTGATGGAATTCCCACACTATGGGAAGACGTATTTGGTTTTAAGCAAG 655
| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 704 TGAATGTTTTACCAGATGGAATTCCCACACTATTAGAAGACGTATTTGGTTTTAAGAAAG 763
Query 656 GCGCTCCATTGACTGGAATATTAGAAGCTATGTCAAATGAATTTTCCGTCCAGCGAATGG 715
| | ||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||
Sbjct 764 GTGATCCATTGACTGGAATGTTAGACGCTTTGTCAAATGAATTTTCTGTCCAGCGAATGG 823
Query 716 GCGGAGTGGGTGGAGGGATGCTAAGAGATCTCTTTGCAGTTTCAGCTAATCTTCCAACTC 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 824 GCGGAGTGGGTGGAGGGATGCTAAGAGATCTCTTTGCAGTTTCAGCTAATCTTCCTACTT 883
Query 776 TGAGTAGGATGTTCTCTAAGGACACACTCCTTTGGAAGCTTGAAATGCTAAAGTCTGCTA 835
|||||||||||||| ||||||| ||||| |||||||||||||| ||||| |||| ||| |
Sbjct 884 TGAGTAGGATGTTCCCTAAGGAGACACTGCTTTGGAAGCTTGAGATGCTTAAGTGTGCCA 943
Query 836 TTGCTTCTGTAAATTCTCACATATACTCAGTTAAAGCTGAAACACTGATACTTCCAAGTG 895
|| | ||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 944 TTTCATCTGTAAATTCTCACATATACTCGGTCAGAGCTGAAACACTGATACTTCCAAGTG 1003
Query 896 GACGTGATCAATGGCTGCTTAATGAGGAAGACATTGTCAGATACTCGCGAACGTTGCCAA 955
|||| ||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1004 GACGCGATCAATGGATGCATAATGAGGAAGACATAGTCAGATACTCGCGAACGTTGCCAA 1063
Query 956 ATTGTATTGTACGTAAGCTTGATGACAATGGACAGTTTCCTCTTTTGGAGGACAGCTTAG 1015
| ||||| || ||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1064 AATGTATAGTCCGTAAGCTTGATGACAATGGACAGTTTCCCCTTTTGGAGGACAGCCTAG 1123
Query 1016 ATCTGGCTACTATCATCAAGCTTACTTGTTTTTATCGCCGTGGGAAGTCACATGATTACG 1075
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1124 ATCTGGCTACTATCATCAAGCTTACTTGTTTTTATCGCCGTGGGAAGTCTCATGATCACA 1183
Query 1076 TTTCGGATTACATTAAACCTACCCCTTTTGAGTTACAACAACTATTAGACGAGCACCGAT 1135
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1184 TTTCGGATTACATTAAACCTACCCCTTTTGAGTTACAACAACAATTAGACGAGCACCGAT 1243
Query 1136 TGCTAATGGATGCTATTTCACCTGTAATGCTATCAACTCTAGAAGACGGT 1185
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 TGCTAATGGATGCTATTTCACCTGTAATGCTATCAACTCTAGAAGACGGT 1293
Score = 1088 bits (589), Expect = 0.0
Identities = 679/723 (94%), Gaps = 3/723 (0%)
Strand=Plus/Plus
Query 1183 GGTCTACTCTTAAAAGAGAGGAATATTCACATGCGTGGTTTGACACATCCGATGGTATTT 1242
||| ||||| | ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1390 GGTTTACTCCTGAAAGAGAGGAACATTCACATGCGTGGTTTGACACATCCTATGGTATTT 1449
Query 1243 ATGTATATCCAAGACTCGTTAGTCGACCCGAAGATGTTTGACAAATATAAGTTAATGGGT 1302
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1450 ATGTATATCCAAGACTCGTTAGTCGACCCGAAAATGTTTGACAAATATAAGTTAATGGGT 1509
Query 1303 GGAGTACCTGTCTCCAATATGAATTTCTACAAACTACTGCGTGAAAAGGCTCATGTGCTT 1362
|| || |||||||||||||||||||||||||||||| | |||| |||| |||| ||||||
Sbjct 1510 GGGGTTCCTGTCTCCAATATGAATTTCTACAAACTATTACGTGGAAAGTCTCACGTGCTT 1569
Query 1363 TTGTATCCTGGAGGTGTCCGCGAAGCTTTGCATAGAAAGGGTGAAGAATACAAGCTGTTT 1422
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1570 TTGTATCCTGGAGGTGTCCGTGAAGCCTTGCATAGAAAGGGTGAAGAATACAAGCTGTTC 1629
Query 1423 TGGCCAGAACAATCCGAGTTTGTGAGAGTTGCATCTAAATTTGGAGCGAAAATCGTTCCT 1482
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1630 TGGCCAGAACGATCCGAGTTTGTGAGAGTTGCATCTAAATTTGGAGCGAAAATCGTTCCT 1689
Query 1483 TTCGGTGTTGTTGGAGAAGACGACATCTTTAATATTGTATTGGACTCCAATGATCAAAGG 1542
|| ||||||||||||| |||||||||||| ||||| || |||| || ||||||||||||
Sbjct 1690 TTTGGTGTTGTTGGAGTAGACGACATCTTCAATATAGTCCTGGATTCTAATGATCAAAGG 1749
Query 1543 AACATCCCTATCCTAAAAGATTTAATGGAAAAAGCAACAAAGGACGCTGGCAACCTAAGG 1602
|||||||||||| | || |||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1750 AACATCCCTATCTTGAACGATTTAATGGAAAAGGCAACAAAGGACGCTGGCAACCTAA-G 1808
Query 1603 TGGAAGGAGACGAAAGCGAATTGGGAAACCAAGATTGCTATAATCCCAGGACTTGTACCT 1662
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1809 -GGAAGGCGACGAAAGCGAATTGGGAAACCAAGATTGCTAT-ATCCCAGGACTTGTACCT 1866
Query 1663 AAAATTCCAGGGCGGTTCTACTATTACTTTGGCAAACCAATAGACTTAGCAGGTAAGGAG 1722
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1867 AAGATTCCAGGGCGGTTCTACTATTACTTTGGAAAACCAATAGACTTAGCAGGTAAGGAG 1926
Query 1723 AAGGAGCTGAAAGACAAAGAAAAGGCACAAGAGGTTTACTTGCAAGCAAAGTCTGAGGTC 1782
|| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1927 AAAGAGCTGAAAGACAAAGAAAAGGCACAAGAGCTTTACTTGCAAGTAAAGTCTGAGGTC 1986
Query 1783 GAACAATGCATTGCATACTTAAAAATGAAAAGAGAGTGTGATCCTTACAGACAATTGTTG 1842
||||||||||| || || |||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1987 GAACAATGCATCGCCTATTTAAAAATGAAAAGAGAGAGTGATCCTTACAGACACTTGTTG 2046
Query 1843 CCAAGGATGATGTATCAAGCCTCACATGGTTGGTCTTGTGAAATCCCAACGTTTGATCTC 1902
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2047 CCAAGGATGTTGTATCAAGCCTCACATGGTTGGTCTTGTGAAATCCCAACGTTTGATCTC 2106
Query 1903 TAA 1905
|||
Sbjct 2107 TAA 2109
Score = 243 bits (131), Expect = 5e-63
Identities = 163/178 (92%), Gaps = 3/178 (2%)
Strand=Plus/Plus
Query 1 ATGGGGGTTACATTACTTCGCTCAATCTTCGGTCTCTGTGCCGTCTCATCTTCATCAAGA 60
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGGGGTTACACTACTTCGCTCAATCTTCGGTCTCTGTGCCGTCTCTTCTTCATCAAGA 60
Query 61 GTAACTGATTCCTACTGTTCAACGAAGTCATATCTCCGACGACGCCGGACCTCCGCCTCG 120
| ||| |||| ||||| |||||||| |||| |||||||||| | | ||||||||||||||
Sbjct 61 GAAACAGATTTCTACTATTCAACGAGGTCAAATCTCCGACG-C-C-GGACCTCCGCCTCG 117
Query 121 AAGCAACGACTCACGGAGATCAAATCCGTAACATCCACTCCTCCTCCTCCTTCTAGGG 178
||||||| |||||||| |||||||||||||||||| ||| ||||||||||||||||||
Sbjct 118 AAGCAACAACTCACGGCGATCAAATCCGTAACATCTACTACTCCTCCTCCTTCTAGGG 175
> Ahg484460 jgi|Araly1|484460|fgenesh2_kg.5__452__AT3G26840.1
Length=2258
Score = 1229 bits (665), Expect = 0.0
Identities = 900/1013 (89%), Gaps = 18/1013 (2%)
Strand=Plus/Plus
Query 178 GAAGCGAGAGATTTCGTTGGGGATGGAGGAGGTCCACCTCGTTGGTTCTCTCCGTTGGAA 237
||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct 285 GAAGCTAGAGATTTCGTCGGAGATAGAGGAGGTCCACCTCGTTGGTTCTCTCCGTTGGAG 344
Query 238 TGCAGAGCTCAAGCGCCAAACTCTCCTCTCCTCCTCTTTTTACCTGGGATCGATGGTACT 297
|| || |||||||| |||||||||||||| ||||| | ||||||||||||||||| |||
Sbjct 345 TGTAGCGCTCAAGCTCCAAACTCTCCTCTTCTCCTATACTTACCTGGGATCGATGGAACT 404
Query 298 GGACTAGGTCTCATTCGTCATCACAAGAAACTTGGGGAGATTTTTGATATATGGTGCCTT 357
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GGACTAGGTCTCATTCGGCATCACAAGAAACTTGGGGAGATTTTTGATATATGGTGCCTT 464
Query 358 CACATTCCCGTCAGTGATCGTACTCCAT-TTAAAGACTTGGTGAAGCTTATTGAGAGGAC 416
|||||||| ||||| ||||| || || | |||||||||| |||||||||||||||| |||
Sbjct 465 CACATTCCAGTCAGCGATCGCAC-CCCTGTTAAAGACTTAGTGAAGCTTATTGAGAAGAC 523
Query 417 AGTTAAGTCGGAGAACTACCGTTTCCCAAATAGACCAATATATTTAGTTGGAGAATCTAT 476
|||||||||||| || | || ||||||||||||||||||||||||||||||||||||||
Sbjct 524 TGTTAAGTCGGAGTACAATCGGTTCCCAAATAGACCAATATATTTAGTTGGAGAATCTAT 583
Query 477 TGGAGCATGTCTTGCGTTAGATGTTGCAGCCAGGAATCCCAACGTTGATCTTGCTCTGAT 536
||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||
Sbjct 584 TGGAGCATGTCTTGCGTTAGATGTTGCAGCCAGGAATCCCAACATCGATCTTTCTCTGAT 643
Query 537 CTTGGTTAATCCAGCCACACATGTCAACAACTTCATGTCAAAACCTCTATTAGGAATGCT 596
||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||
Sbjct 644 CTTGGTTAATCCAGCCACACATGTCAACAACTTCACGTCGCAACCTCTATCAGGAATGCT 703
Query 597 TAATGTTTTACCTGATGGA-ATTCCCACACTATGGGAAGACGTATTTGGTTTTA--A-GC 652
||||||||||| ||| | ||||| ||||||| |||||| |||||||||||| | ||
Sbjct 704 GAATGTTTTACCAAATG-ATATTCCAACACTATTGGAAGATATATTTGGTTTTATTAAGC 762
Query 653 AAGGCGCTCCATTGACTGGAATATTAGAAGCTATGTCAAATGAATTTTCCGTCCAGCGAA 712
|||||| |||| |||| || || ||||| ||| |||||||||||||||| ||||||| ||
Sbjct 763 AAGGCGATCCACTGACCGGGATGTTAGATGCTTTGTCAAATGAATTTTCTGTCCAGC-AA 821
Query 713 TGGGCGGAGTGGGTGGAGGGATGCTAAGAGATCTCTTTGCAGTTTCAGCTAATCTTCCAA 772
| |||||||||||||||||||||||||| |||| ||||||||||||||||| |
Sbjct 822 -------A-TGGGTGGAGGGATGCTAAGAGATCTCCTTGCTGTTTCAGCTAATCTTCCTA 873
Query 773 CTCTGAGTAGGATGTTCTCTAAGGACACACTCCTTTGGAAGCTTGAAATGCTAAAGTCTG 832
|||| |||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 874 CTCTTAGTAGGATGTTCCCTAAGGACACACTGCTTTGGAAGCTGGAAATGCTAAAGTCTG 933
Query 833 CTATTGCTTCTGTAAATTCTCACATATACTCAGTTAAAGCTGAAACACTGATACTTCCAA 892
||||||||||||| |||||||||||||||||||| | ||| |||||||| ||||||| |
Sbjct 934 CTATTGCTTCTGTGAATTCTCACATATACTCAGTCAGAGCGGAAACACTCATACTTCTGA 993
Query 893 GTGGACGTGATCAATGGCTGCTTAATGAGGAAGACATTGTCAGATACTCGCGAACGTTGC 952
||||||| |||||||||||||| || |||||||||||| |||||||||||| |||||||
Sbjct 994 GTGGACGCGATCAATGGCTGCTGAACAAGGAAGACATTGACAGATACTCGCGCACGTTGC 1053
Query 953 CAAATTGTATTGTACGTAAGCTTGATGACAATGGACAGTTTCCTCTTTTGGAGGACAGCT 1012
|||| |||||||| |||||||| |||||||||||||||||||| |||||||||||| ||
Sbjct 1054 CAAAATGTATTGTCCGTAAGCTCGATGACAATGGACAGTTTCCCCTTTTGGAGGACGGCG 1113
Query 1013 TAGATCTGGCTACTATCATCAAGCT-TACTTGTTTTTATCGCCGTGGGAAGTCACATGAT 1071
||||||||||||||||||| ||| | ||||||||||||||||||||||||||| || |||
Sbjct 1114 TAGATCTGGCTACTATCATTAAG-TGTACTTGTTTTTATCGCCGTGGGAAGTCTCACGAT 1172
Query 1072 TACGTTTCGGATTACATTAAACCTACCCCTTTTGAGTTACAACAACTATTAGACGAGCAC 1131
|| || ||||||| |||| ||||| | ||||||||| |||||| | ||||||| |||
Sbjct 1173 CACATTACGGATTATATTATGCCTACTACATTTGAGTTAAAACAACAAATAGACGACCAC 1232
Query 1132 CGATTGCTAATGGATGCTATTTCACCTGTAATGCTATCAACTCTAGAAGACGG 1184
||||| |||||||||| || ||| ||||||||| | |||||||||||||||||
Sbjct 1233 CGATTACTAATGGATGGTACTTCCCCTGTAATGTTGTCAACTCTAGAAGACGG 1285
Score = 957 bits (518), Expect = 0.0
Identities = 654/720 (91%), Gaps = 7/720 (1%)
Strand=Plus/Plus
Query 1188 ACTCTTAAAAGAGAGGAATATTCACATGCGTGGTTTGACACATCCGATGGTATTTATGTA 1247
|||| | ||||||||||| |||||| |||| |||||| ||||||||||| |||||| | |
Sbjct 1388 ACTCATGAAAGAGAGGAACATTCACCTGCGGGGTTTGGCACATCCGATGATATTTAAGAA 1447
Query 1248 TATCCAAGACTCGTTAGTCGACCCGAAGATGTTTGACAAATATAAGTTAATGGGTGGAGT 1307
| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1448 TCTTCAAGACTCGTTAGTCGACACGAAGATGTTTGACAAATATAAGTTAATGGGTGGAGT 1507
Query 1308 ACCTGTCT-CCAATATGAATTTCTACAAACTACTGCGTGAAAAGGCTCATGTGCTTTTGT 1366
|| |||| ||| | | ||| ||||||||||||| ||||||||| |||| ||||||||||
Sbjct 1508 TCCAGTCTCCCAGT-TCAATATCTACAAACTACTTCGTGAAAAGTCTCACGTGCTTTTGT 1566
Query 1367 ATCCTGGAGGTGTCCGCGAAGCTTTGCATAGAAAGGGTGAAGAATACAAGCTGTTTTGGC 1426
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 ACCCTGGAGGTGTCCGTGAAGCTTTGCATAGAAAGGGTGAAGAATACAAGCTGTTTTGGC 1626
Query 1427 CAGAACAATCCGAGTTTGTGAGAGTTGCATCTAAATTTGGAGCGAAAATCGTTCCTTTCG 1486
|||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1627 CAGAACGATCTGAGTTTGTAAGAGTTGCATCTAAATTTGGAGCGAAAATCGTTCCTTTCG 1686
Query 1487 GTGTTGTTGGAGAAGACGACATCTTT-AATATTGTATTGGACTCCAATGATCAAAGGAAC 1545
|||||||||||||||||||||||| || ||||| | || |||||||||||||| |||
Sbjct 1687 GTGTTGTTGGAGAAGACGACATCTGCGAA-ATTGTCCTAGATTCCAATGATCAAAGAAAC 1745
Query 1546 ATCCCTATCCTAAAAGATTTAATGGAAAAAGCAACAAAGGACGCTGGCAACCTAAGGTGG 1605
|||||||||||||| |||||||||||||| ||||| ||||||||||| ||| ||||| |
Sbjct 1746 ATCCCTATCCTAAAGGATTTAATGGAAAAGGCAACTAAGGACGCTGGGAACATAAGG-G- 1803
Query 1606 AAGGAGACGAAAGCGAATTGGGAAACCAAGATTGCTATAATCCCAGGACTTGTACCTAAA 1665
|||| ||||| ||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1804 AAGGCGACGAGAGCGAATTGGGAAACCAAGATTGCTATT-TCCCAGGACTGGTACCTAAG 1862
Query 1666 ATTCCAGGGCGGTTCTACTATTACTTTGGCAAACCAATAGACTTAGCAGGTAAGGAGAAG 1725
||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1863 ATTCCGGGGCGGTTCTACTATTACTTTGGAAAACCAATAGAAACAGCAGGTAAGGAGAAA 1922
Query 1726 GAGCTGAAAGACAAAGAAAAGGCACAAGAGGTTTACTTGCAAGCAAAGTCTGAGGTCGAA 1785
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1923 GAGCTGAAAGACAAAGAAAAGGCACAAGAGCTTTACTTGCAAGTAAAGTCTGAGGTCGAA 1982
Query 1786 CAATGCATTGCATACTTAAAAATGAAAAGAGAGTGTGATCCTTACAGACAATTGTTGCCA 1845
||||||||||| || |||||| | ||||||||| |||||||||||||||| |||||||||
Sbjct 1983 CAATGCATTGCCTATTTAAAAGTAAAAAGAGAGAGTGATCCTTACAGACACTTGTTGCCA 2042
Query 1846 AGGATGATGTATCAAGCCTCACATGGTTGGTCTTGTGAAATCCCAACGTTTGATCTCTAA 1905
|||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 2043 AGGATGTTGTATCAAGCCTCACATGGTTGGTCTTCTGAAATTCCAACGTTTGATCTCTAA 2102
> Ahg493863 jgi|Araly1|493863|fgenesh2_kg.7__3296__AT5G41120.1
Length=2179
Score = 344 bits (186), Expect = 1e-93
Identities = 490/630 (78%), Gaps = 47/630 (7%)
Strand=Plus/Plus
Query 1295 TAATGGGTGGAGTACCTGTCTC-CAATATGAATTTCTACAAACTACTGCGTGAAAAGGCT 1353
|||| || | ||| |||||||| | |||||||| ||||||||||| ||| |||||||
Sbjct 1457 TAATAGGCGCAGTTCCTGTCTCGGGA-ATGAATTTTTACAAACTACTTCGTTCAAAGGCT 1515
Query 1354 CATGT-GCTTTTGTATCCTGGAGGTGTCCGCGAAGCTTTGCATAGAAAGGGTGAAGAATA 1412
|| || || |||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1516 CACGTGGC-TTTGTACCCTGGAGGTGTTCGTGAAGCTTTGCATAGAAAGGGTGAAGAATA 1574
Query 1413 CAAGCTGTTTTGGCCAGAACAATCCGAGTTTGTGAGAGTT-GCATCTAAATTTGGAGCGA 1471
|||| |||||||||||||||| || |||||||| || | | ||||||||||||||||| |
Sbjct 1575 CAAGTTGTTTTGGCCAGAACATTCGGAGTTTGTAAG-GATAGCATCTAAATTTGGAGCAA 1633
Query 1472 AAATCGTTCCTTTCGGTGTTGTTGGAGAAGACGA-CATCTTT-AATATTGTATTGGACTC 1529
||||| ||||||| || | |||||| ||||| || | ||| | || || || || || |
Sbjct 1634 AAATCATTCCTTTTGGAGCTGTTGGTGAAGATGATC-TCTGTGAA-ATGGTTTTAGATTA 1691
Query 1530 CAATGATCAAAGGAACATCCCTATCCTAAAAGA-T-TTAATGGAAAA-AGCAACA-AAGG 1585
||||||||||| ||| |||||| || | || || | ||| || || | | |||| |||
Sbjct 1692 CAATGATCAAATGAAGATCCCTTTCTTGAA-GAATCTTATTG-AAGAGAT-AACACAAG- 1747
Query 1586 ACGCTGGCAACCTAAGGTGGAAGGA-GACGAAAGCGAATTGGGAAACCAAGATT-GCTAT 1643
|| | | ||| | ||| || || || ||| ||||||||||||| ||||||| || ||
Sbjct 1748 ACTCCGTTAACTTGAGG---AACGATGAAGAAGGCGAATTGGGAAAACAAGATTTGC-AT 1803
Query 1644 AATCCCAGGACTTGTACCTAAAATTCCAGGG-CGGTTCTAC-TATTACTTTGGCAAACCA 1701
| || ||| | || || || ||||| ||| ||||| ||| ||| ||||||| ||||||
Sbjct 1804 G-TGCCTGGAATAGTTCCCAAGATTCC-GGGACGGTTTTACGTAT-ACTTTGGGAAACCA 1860
Query 1702 ATAGACTTAGCAGGTA-AGGAGAAGGAGCTGAAAGAC-AAAGA-AAAGGCACAAGAGGTT 1758
||||| || ||||| ||| ||| ||||| ||| | ||||| |||| | || ||||||
Sbjct 1861 ATAGAAACAGAAGGTAGAGG-GAAAGAGCT-AAATAATAAAGAGAAAG-CTCATGAGGTT 1917
Query 1759 TACTTGCAAG-CAAAGTCTGAGGTCGAACA-ATGCATTG-CATACTTAAAAATGAAAAGA 1815
|||||| | | ||| ||||||||| ||| | ||| || | | || ||||| |||||||||
Sbjct 1918 TACTTGGAGGTCAA-GTCTGAGGTTGAA-AGATGTAT-GACCTATTTAAAGATGAAAAGA 1974
Query 1816 GAGTGTGATCCTTACAGACA-ATTGTTGCCAAGGAT-GATGTATCAAGC-CTCACATGGT 1872
|| ||||||||||||| | ||| ||||| ||| | | | ||| | | ||| || |||
Sbjct 1975 GAAACTGATCCTTACAGAAACATT-TTGCCGAGG-TCGCTCTATTAC-CTCTCTCACGGT 2031
Query 1873 TGGTCTTGTGAAATCCCAACGTTTGATCTC 1902
| |||| |||||||||| |||||||||
Sbjct 2032 TTCTCTTCCCAAATCCCAACCTTTGATCTC 2061
> Ahg896560 jgi|Araly1|896560|Al_scaffold_0005_526
Length=267
Score = 252 bits (136), Expect = 8e-66
Identities = 176/195 (90%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 1713 AGGTAAGGAGAAGGAGCTGAAAGACAAAGAAAAGGCACAAGAGGTTTACTTGCAAG-CAA 1771
||||||| |||| ||||| ||||||||||| ||||||||| || |||||||||||| | |
Sbjct 75 AGGTAAGAAGAAAGAGCTCAAAGACAAAGATAAGGCACAAAAGCTTTACTTGCAAGTC-A 133
Query 1772 AGTCTGAGGTCGAACAATGCATTGCATACTTAAAAATGAAAAGAGAGTGTGATCCTTACA 1831
|||||||||||||| ||||||| || || |||||| ||||||||||| ||||||||||||
Sbjct 134 AGTCTGAGGTCGAAGAATGCATCGCCTATTTAAAAGTGAAAAGAGAGAGTGATCCTTACA 193
Query 1832 GACAA-TTGTTGCCAAGGATGATGTATCAAGCCTCACATGGTTGGTCTTGTGAAATCCCA 1890
|| || ||||||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 194 GA-AACTTGTTGCCAAGGATGATGTATCAAGCCTCGCATGGTTGGTCTTCTGAAATTCCA 252
Query 1891 ACGTTTGATCTCTAA 1905
|||||||||||||||
Sbjct 253 ACGTTTGATCTCTAA 267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71571570355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5