BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26850.1
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347050 jgi|Araly1|347050|fgenesh1_pg.C_scaffold_5000442 1232 0.0
> Ahg347050 jgi|Araly1|347050|fgenesh1_pg.C_scaffold_5000442
Length=801
Score = 1232 bits (667), Expect = 0.0
Identities = 758/802 (95%), Gaps = 5/802 (1%)
Strand=Plus/Plus
Query 354 ATGACTTTTCAGACAGAGGTTCCTGATGATGGTTCTAGACAAGCTTCTTCTTCGCCTTAC 413
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATTTTCAGACAGAGGTTCCTGATGATGGTTCTAGACAAGCTTCTTCTTCGCCTTAC 60
Query 414 TCTGGAAAAGGCAA-GATTGTTCCGGAATGTGGTCTTGTTGGTGATATGTATGATCCTTT 472
|||||||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 61 TCTGGAAAAG-CAAAGATTGTTCCTGAATGTGGTCTTGTTGGTGACATGTATGATCCTTT 119
Query 473 TGTAGACAGTTTTGAACCAGCGTCTGTGAAATTAGATTGTGTTCAGGAGCATGAACCAGA 532
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGTAGACAGCTTTGAACCAGCGTCTGTGAAATTAGATTGTGTTCAGGAGCATGAACCAGA 179
Query 533 TAACGA---CTTGTGCATTGTACCGAAGGCGAGCATTTCTTCGAATAGACCGCTTAGTAT 589
|||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 180 TAACGAAGTCTTGTGCATTGTACCAAAGGCGAGCATTTCCTCGAATAGACCGCTTAGTAT 239
Query 590 GGAAGAAAACAACCAAGCTGTTGATAAGGAACCTTTATGTGAGTCAGAAATGACTGCTCG 649
||||||||||||||||| |||||||||| || || || |||||||||| ||||||||||
Sbjct 240 GGAAGAAAACAACCAAGGTGTTGATAAGCAAGCTCTAAGTGAGTCAGACGTGACTGCTCG 299
Query 650 GGTCAGTGTTTCCTCGAACAAACCAGCTGATGTTGAAGAAAACACTGCTGGAATTGAGAT 709
||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct 300 GGTCAGTGTTTCCTCCAACAAACCAGCTGATGTTGAAGAAAACACCACAGGAATTGAGAT 359
Query 710 TGGAGAAGTTGTTTCTGGAGAGGATGATGAGTTTGGTAAGAATGTGGACGATGGAAGAGA 769
||||| |||||||||||||||| | |||||||||||| ||||||||||| ||||||||||
Sbjct 360 TGGAGTAGTTGTTTCTGGAGAGAACGATGAGTTTGGTGAGAATGTGGACAATGGAAGAGA 419
Query 770 ATGTAATAGCCATGAGACTTTGACTCCAAACTCTGATAATGAGAATCCGAAGGTAGAGAA 829
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 ATGTAACAGCCATGAGACTTTGACTCCAAACTCTGATAACGAGAATCCGAAGGTAGAGAA 479
Query 830 CAATGTACATGAAGGCGATAACACAAGGAAAAAGTCTCGAGAGAAATCAAAGGAGAGAGA 889
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 480 CAATGTACATGAAGGCGATAACACGGGGAAAAAGTCTCGAGAGAAATCAAAGGAGAGAGA 539
Query 890 TTCATCAAGGTCCATGAAGCTTTTCAAAGTCGTGCTTACAAAATTCGTCAAGGATCTTCT 949
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 TTCGTCAAGGTCCATGAAGCTTTTCAAAGTTGTGCTTACAAAATTCGTCAAGGATCTTCT 599
Query 950 GAAACCATCGTGGAGACAAGGGAATATGAGCAAGGAGGCGTTTAAGACTATTGTGAAGAG 1009
|||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 600 AAAACCATCGTGGAGACAAGGGAATATGAGCAAAGAAGCGTTTAAGACTATCGTGAAGAG 659
Query 1010 AGTGGTGGATAAAGTATCAAACTCAATGGAGGGTCGTCGTATTCCCAAATCAAGAGCTAA 1069
||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 660 AGTGGTGGATAAAGTGTCAAACTCAATGGAGGGTCATCGTATACCCAAATCAAGAGCTAA 719
Query 1070 GATCGATAAGTACATTGATTCTTCACAGCAGAAGCTTACCAAACTGGTTATGGGTTATGT 1129
|||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 720 GATCGATAGGTACATTGATTCTTCACAGCAGAAGCTGACCAAACTGGTCATGGGTTATGT 779
Query 1130 AGACAAGTATGTCAAAGCATAG 1151
|||||| |||||||||||||||
Sbjct 780 AGACAAATATGTCAAAGCATAG 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54659501575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5