BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26850.1 Length=1461 Score E Sequences producing significant alignments: (Bits) Value Ahg347050 jgi|Araly1|347050|fgenesh1_pg.C_scaffold_5000442 1232 0.0 > Ahg347050 jgi|Araly1|347050|fgenesh1_pg.C_scaffold_5000442 Length=801 Score = 1232 bits (667), Expect = 0.0 Identities = 758/802 (95%), Gaps = 5/802 (1%) Strand=Plus/Plus Query 354 ATGACTTTTCAGACAGAGGTTCCTGATGATGGTTCTAGACAAGCTTCTTCTTCGCCTTAC 413 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAATTTTCAGACAGAGGTTCCTGATGATGGTTCTAGACAAGCTTCTTCTTCGCCTTAC 60 Query 414 TCTGGAAAAGGCAA-GATTGTTCCGGAATGTGGTCTTGTTGGTGATATGTATGATCCTTT 472 |||||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 61 TCTGGAAAAG-CAAAGATTGTTCCTGAATGTGGTCTTGTTGGTGACATGTATGATCCTTT 119 Query 473 TGTAGACAGTTTTGAACCAGCGTCTGTGAAATTAGATTGTGTTCAGGAGCATGAACCAGA 532 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TGTAGACAGCTTTGAACCAGCGTCTGTGAAATTAGATTGTGTTCAGGAGCATGAACCAGA 179 Query 533 TAACGA---CTTGTGCATTGTACCGAAGGCGAGCATTTCTTCGAATAGACCGCTTAGTAT 589 |||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 180 TAACGAAGTCTTGTGCATTGTACCAAAGGCGAGCATTTCCTCGAATAGACCGCTTAGTAT 239 Query 590 GGAAGAAAACAACCAAGCTGTTGATAAGGAACCTTTATGTGAGTCAGAAATGACTGCTCG 649 ||||||||||||||||| |||||||||| || || || |||||||||| |||||||||| Sbjct 240 GGAAGAAAACAACCAAGGTGTTGATAAGCAAGCTCTAAGTGAGTCAGACGTGACTGCTCG 299 Query 650 GGTCAGTGTTTCCTCGAACAAACCAGCTGATGTTGAAGAAAACACTGCTGGAATTGAGAT 709 ||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| Sbjct 300 GGTCAGTGTTTCCTCCAACAAACCAGCTGATGTTGAAGAAAACACCACAGGAATTGAGAT 359 Query 710 TGGAGAAGTTGTTTCTGGAGAGGATGATGAGTTTGGTAAGAATGTGGACGATGGAAGAGA 769 ||||| |||||||||||||||| | |||||||||||| ||||||||||| |||||||||| Sbjct 360 TGGAGTAGTTGTTTCTGGAGAGAACGATGAGTTTGGTGAGAATGTGGACAATGGAAGAGA 419 Query 770 ATGTAATAGCCATGAGACTTTGACTCCAAACTCTGATAATGAGAATCCGAAGGTAGAGAA 829 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 420 ATGTAACAGCCATGAGACTTTGACTCCAAACTCTGATAACGAGAATCCGAAGGTAGAGAA 479 Query 830 CAATGTACATGAAGGCGATAACACAAGGAAAAAGTCTCGAGAGAAATCAAAGGAGAGAGA 889 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 480 CAATGTACATGAAGGCGATAACACGGGGAAAAAGTCTCGAGAGAAATCAAAGGAGAGAGA 539 Query 890 TTCATCAAGGTCCATGAAGCTTTTCAAAGTCGTGCTTACAAAATTCGTCAAGGATCTTCT 949 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 540 TTCGTCAAGGTCCATGAAGCTTTTCAAAGTTGTGCTTACAAAATTCGTCAAGGATCTTCT 599 Query 950 GAAACCATCGTGGAGACAAGGGAATATGAGCAAGGAGGCGTTTAAGACTATTGTGAAGAG 1009 |||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| Sbjct 600 AAAACCATCGTGGAGACAAGGGAATATGAGCAAAGAAGCGTTTAAGACTATCGTGAAGAG 659 Query 1010 AGTGGTGGATAAAGTATCAAACTCAATGGAGGGTCGTCGTATTCCCAAATCAAGAGCTAA 1069 ||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 660 AGTGGTGGATAAAGTGTCAAACTCAATGGAGGGTCATCGTATACCCAAATCAAGAGCTAA 719 Query 1070 GATCGATAAGTACATTGATTCTTCACAGCAGAAGCTTACCAAACTGGTTATGGGTTATGT 1129 |||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 720 GATCGATAGGTACATTGATTCTTCACAGCAGAAGCTGACCAAACTGGTCATGGGTTATGT 779 Query 1130 AGACAAGTATGTCAAAGCATAG 1151 |||||| ||||||||||||||| Sbjct 780 AGACAAATATGTCAAAGCATAG 801 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54659501575 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5